Wall clock time and date at job start Mon Mar 30 2020 05:36:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86799 * 120.00219 * 2 1 4 4 H 1.48497 * 109.47454 * 269.99841 * 3 2 1 5 5 H 1.48493 * 109.47198 * 30.00185 * 3 2 1 6 6 H 1.48504 * 109.46980 * 149.99920 * 3 2 1 7 7 C 1.37884 * 119.99833 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99715 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00017 * 0.02562 * 7 2 1 10 10 H 1.08998 * 110.64121 * 56.85609 * 9 7 2 11 11 C 1.55159 * 110.71952 * 293.52375 * 9 7 2 12 12 C 1.55129 * 101.48377 * 205.97066 * 11 9 7 13 13 N 1.47421 * 104.72458 * 37.29063 * 12 11 9 14 14 C 1.34784 * 125.64843 * 155.81647 * 13 12 11 15 15 O 1.21279 * 119.99925 * 179.69439 * 14 13 12 16 16 C 1.50700 * 119.99961 * 359.69671 * 14 13 12 17 17 H 1.09011 * 109.38697 * 300.00268 * 16 14 13 18 18 C 1.52574 * 109.39302 * 180.19860 * 16 14 13 19 19 C 1.52622 * 110.70573 * 169.07376 * 18 16 14 20 20 C 1.53103 * 109.86958 * 70.82164 * 19 18 16 21 21 S 1.81750 * 108.83985 * 296.93614 * 20 19 18 22 22 C 1.53100 * 109.39041 * 59.79858 * 16 14 13 23 23 C 1.47018 * 108.70379 * 335.55582 * 13 12 11 24 24 H 0.97003 * 119.99524 * 0.02562 * 1 2 3 25 25 H 1.09004 * 111.00410 * 324.20795 * 11 9 7 26 26 H 1.08993 * 111.00686 * 88.02142 * 11 9 7 27 27 H 1.09005 * 110.49746 * 278.45477 * 12 11 9 28 28 H 1.08997 * 110.34301 * 156.05884 * 12 11 9 29 29 H 1.09000 * 109.22444 * 289.49877 * 18 16 14 30 30 H 1.09006 * 109.22526 * 48.85097 * 18 16 14 31 31 H 1.08996 * 109.46260 * 310.67917 * 19 18 16 32 32 H 1.08998 * 109.39979 * 190.91854 * 19 18 16 33 33 H 1.08994 * 109.57564 * 177.12967 * 20 19 18 34 34 H 1.08998 * 109.57631 * 56.74564 * 20 19 18 35 35 H 1.08999 * 109.57653 * 302.97985 * 22 16 14 36 36 H 1.08999 * 109.57303 * 63.36955 * 22 16 14 37 37 H 1.09010 * 109.88204 * 120.70275 * 23 13 12 38 38 H 1.09004 * 109.88434 * 241.70985 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4991 -0.0017 10 1 0.5762 -2.5525 -0.8561 11 6 0.4744 -2.6858 1.3285 12 6 0.3764 -4.2316 1.4147 13 7 1.6647 -4.7186 0.8889 14 6 2.2298 -5.9087 1.1734 15 8 3.2951 -6.2082 0.6770 16 6 1.5380 -6.8671 2.1082 17 1 1.4118 -6.3947 3.0825 18 6 2.3861 -8.1261 2.2617 19 6 1.8580 -8.9972 3.3983 20 6 0.5251 -9.6313 2.9918 21 16 -0.6944 -8.3112 2.7207 22 6 0.1645 -7.2309 1.5381 23 6 2.2279 -3.6937 -0.0021 24 1 -0.4849 0.8401 -0.0004 25 1 1.0363 -2.2791 2.1694 26 1 -0.5164 -2.2354 1.2690 27 1 -0.4465 -4.5968 0.8000 28 1 0.2461 -4.5459 2.4502 29 1 2.3593 -8.6926 1.3309 30 1 3.4157 -7.8412 2.4781 31 1 1.7109 -8.3841 4.2874 32 1 2.5806 -9.7831 3.6178 33 1 0.1777 -10.2919 3.7861 34 1 0.6572 -10.2010 2.0720 35 1 -0.4185 -6.3232 1.3827 36 1 0.2895 -7.7539 0.5900 37 1 3.2026 -3.3757 0.3681 38 1 2.3275 -4.0939 -1.0112 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260103864.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:35 Heat of formation + Delta-G solvation = -67.877833 kcal Electronic energy + Delta-G solvation = -18925.872246 eV Core-core repulsion = 16085.833461 eV Total energy + Delta-G solvation = -2840.038785 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.33604 -38.69116 -37.22111 -35.03658 -33.18142 -31.71780 -30.07530 -28.23506 -27.09479 -25.25201 -23.47488 -22.20948 -21.42900 -20.19087 -18.79888 -18.06315 -17.53382 -17.02016 -16.53481 -16.18596 -16.15822 -15.39674 -14.98569 -14.48745 -14.43800 -14.31544 -14.20111 -13.77005 -13.53500 -13.14879 -13.06888 -12.91884 -12.72358 -12.53422 -12.41436 -12.29339 -11.99095 -11.88396 -11.61793 -11.38732 -10.97146 -10.91829 -10.54852 -10.52425 -9.63333 -8.70434 -8.17465 -6.26540 0.73388 1.38688 1.41848 1.43903 1.53024 1.65684 2.05040 2.43197 3.14781 3.46529 3.57091 3.59289 3.88067 3.97703 4.06064 4.12578 4.28817 4.30379 4.44124 4.46189 4.51383 4.55253 4.68577 4.78631 4.81246 4.85388 5.00976 5.06688 5.10987 5.23174 5.27457 5.33480 5.55983 5.74759 5.85295 6.26524 6.58845 6.79228 7.08135 7.41158 8.91869 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.039045 B = 0.004271 C = 0.003992 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 716.950333 B = 6554.299079 C = 7012.283709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.911 5.911 2 C 0.024 3.976 3 Si 0.952 3.048 4 H -0.277 1.277 5 H -0.280 1.280 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.050 0.950 9 C 0.039 3.961 10 H 0.020 0.980 11 C -0.102 4.102 12 C 0.101 3.899 13 N -0.610 5.610 14 C 0.524 3.476 15 O -0.588 6.588 16 C -0.091 4.091 17 H 0.118 0.882 18 C -0.108 4.108 19 C -0.112 4.112 20 C -0.078 4.078 21 S -0.274 6.274 22 C -0.076 4.076 23 C 0.120 3.880 24 H 0.264 0.736 25 H 0.048 0.952 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.095 0.905 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.081 0.919 32 H 0.099 0.901 33 H 0.125 0.875 34 H 0.090 0.910 35 H 0.116 0.884 36 H 0.084 0.916 37 H 0.043 0.957 38 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.735 -17.022 7.869 18.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.550 5.550 2 C -0.177 4.177 3 Si 0.778 3.222 4 H -0.203 1.203 5 H -0.206 1.206 6 H -0.197 1.197 7 C -0.575 4.575 8 H 0.068 0.932 9 C 0.020 3.980 10 H 0.038 0.962 11 C -0.141 4.141 12 C -0.021 4.021 13 N -0.342 5.342 14 C 0.312 3.688 15 O -0.469 6.469 16 C -0.114 4.114 17 H 0.136 0.864 18 C -0.146 4.146 19 C -0.151 4.151 20 C -0.226 4.226 21 S -0.046 6.046 22 C -0.225 4.225 23 C -0.002 4.002 24 H 0.073 0.927 25 H 0.067 0.933 26 H 0.088 0.912 27 H 0.098 0.902 28 H 0.113 0.887 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.100 0.900 32 H 0.117 0.883 33 H 0.143 0.857 34 H 0.108 0.892 35 H 0.134 0.866 36 H 0.103 0.897 37 H 0.062 0.938 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -2.365 -17.038 8.078 19.003 hybrid contribution 1.620 1.246 -1.008 2.279 sum -0.745 -15.792 7.070 17.318 Atomic orbital electron populations 1.70022 1.06919 1.27577 1.50433 1.25613 0.95671 1.01997 0.94381 0.85642 0.78729 0.79593 0.78220 1.20255 1.20560 1.19684 1.21320 0.92810 0.91478 1.51894 0.93180 1.19628 0.92901 0.90977 0.94533 0.96175 1.22596 1.00892 0.92135 0.98484 1.22687 0.84434 0.95235 0.99704 1.48784 1.22897 1.16154 1.46372 1.20891 0.84791 0.81081 0.82049 1.90639 1.24274 1.76742 1.55249 1.21494 0.94900 0.95899 0.99071 0.86386 1.21355 0.99320 0.93932 1.00026 1.21716 0.95893 0.99683 0.97824 1.23612 0.95646 0.97194 1.06150 1.87008 1.29400 1.28794 1.59441 1.23510 0.96585 1.02677 0.99703 1.22005 0.97701 0.88428 0.92093 0.92706 0.93335 0.91206 0.90239 0.88661 0.91842 0.91221 0.90050 0.88283 0.85663 0.89166 0.86641 0.89697 0.93839 0.93723 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.00 12.50 21.45 0.27 -49.74 16 2 C 0.02 1.26 5.36 84.66 0.45 1.71 16 3 Si 0.95 42.47 29.54 68.60 2.03 44.49 16 4 H -0.28 -12.15 7.11 99.48 0.71 -11.44 16 5 H -0.28 -12.17 7.11 99.48 0.71 -11.46 16 6 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 7 C -0.54 -28.81 8.47 25.60 0.22 -28.59 16 8 H 0.05 2.71 7.53 -2.91 -0.02 2.69 16 9 C 0.04 1.86 2.78 -10.35 -0.03 1.83 16 10 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 11 C -0.10 -4.30 5.96 32.06 0.19 -4.11 16 12 C 0.10 3.25 5.14 86.93 0.45 3.70 16 13 N -0.61 -22.35 3.32 -811.35 -2.69 -25.04 16 14 C 0.52 18.05 7.20 87.66 0.63 18.68 16 15 O -0.59 -24.52 16.10 -3.03 -0.05 -24.57 16 16 C -0.09 -2.22 1.73 -11.65 -0.02 -2.24 16 17 H 0.12 2.64 7.76 -2.38 -0.02 2.62 16 18 C -0.11 -2.31 4.37 30.33 0.13 -2.17 16 19 C -0.11 -1.60 5.76 30.50 0.18 -1.43 16 20 C -0.08 -1.08 6.45 72.02 0.46 -0.62 16 21 S -0.27 -5.39 22.33 -56.49 -1.26 -6.66 16 22 C -0.08 -1.69 5.56 72.02 0.40 -1.29 16 23 C 0.12 5.26 6.45 86.73 0.56 5.82 16 24 H 0.26 13.79 8.31 -92.71 -0.77 13.02 16 25 H 0.05 2.13 8.04 -2.39 -0.02 2.11 16 26 H 0.07 3.10 7.77 -2.39 -0.02 3.08 16 27 H 0.08 2.32 7.02 -2.38 -0.02 2.30 16 28 H 0.10 2.50 7.36 -2.39 -0.02 2.49 16 29 H 0.06 1.42 8.08 -2.39 -0.02 1.40 16 30 H 0.07 1.69 7.70 -2.38 -0.02 1.67 16 31 H 0.08 1.15 8.05 -2.39 -0.02 1.13 16 32 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.13 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 35 H 0.12 2.62 4.89 -2.39 -0.01 2.61 16 36 H 0.08 1.92 8.14 -2.39 -0.02 1.90 16 37 H 0.04 2.03 7.63 -2.38 -0.02 2.01 16 38 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 Total: -1.00 -61.88 309.33 2.95 -58.93 By element: Atomic # 1 Polarization: 10.25 SS G_CDS: 1.03 Total: 11.28 kcal Atomic # 6 Polarization: -12.33 SS G_CDS: 3.62 Total: -8.71 kcal Atomic # 7 Polarization: -72.35 SS G_CDS: -2.43 Total: -74.78 kcal Atomic # 8 Polarization: -24.52 SS G_CDS: -0.05 Total: -24.57 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Atomic # 16 Polarization: -5.39 SS G_CDS: -1.26 Total: -6.66 kcal Total: -61.88 2.95 -58.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260103864.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.944 kcal (2) G-P(sol) polarization free energy of solvation -61.881 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.825 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.948 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.934 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds