Wall clock time and date at job start Mon Mar 30 2020 05:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86790 * 120.00018 * 2 1 4 4 H 1.48502 * 109.47264 * 270.00018 * 3 2 1 5 5 H 1.48497 * 109.47355 * 29.99572 * 3 2 1 6 6 H 1.48503 * 109.47411 * 149.99876 * 3 2 1 7 7 C 1.37879 * 119.99730 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99407 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00398 * 359.97438 * 7 2 1 10 10 H 1.08997 * 110.63473 * 56.85856 * 9 7 2 11 11 C 1.55151 * 110.72002 * 293.52471 * 9 7 2 12 12 C 1.54909 * 101.57806 * 206.13466 * 11 9 7 13 13 N 1.47419 * 104.83694 * 37.00810 * 12 11 9 14 14 C 1.34776 * 125.65064 * 156.13662 * 13 12 11 15 15 O 1.21283 * 120.00071 * 354.73839 * 14 13 12 16 16 C 1.50703 * 120.00018 * 174.74142 * 14 13 12 17 17 H 1.08995 * 109.38817 * 26.03934 * 16 14 13 18 18 C 1.52580 * 109.38883 * 145.84128 * 16 14 13 19 19 C 1.52622 * 110.70251 * 190.92188 * 18 16 14 20 20 C 1.53103 * 109.87197 * 289.18183 * 19 18 16 21 21 S 1.81745 * 108.84006 * 63.06125 * 20 19 18 22 22 C 1.53098 * 109.38724 * 266.23770 * 16 14 13 23 23 C 1.47029 * 108.70171 * 335.87416 * 13 12 11 24 24 H 0.96994 * 120.00169 * 0.02562 * 1 2 3 25 25 H 1.09005 * 111.00341 * 324.20561 * 11 9 7 26 26 H 1.08997 * 111.00917 * 88.05675 * 11 9 7 27 27 H 1.09001 * 110.36694 * 278.16335 * 12 11 9 28 28 H 1.09003 * 110.36578 * 155.85104 * 12 11 9 29 29 H 1.08998 * 109.23144 * 311.14610 * 18 16 14 30 30 H 1.09005 * 109.22787 * 70.50452 * 18 16 14 31 31 H 1.09000 * 109.40185 * 169.07526 * 19 18 16 32 32 H 1.09001 * 109.38580 * 49.27102 * 19 18 16 33 33 H 1.09000 * 109.57219 * 303.25464 * 20 19 18 34 34 H 1.09004 * 109.57517 * 182.86828 * 20 19 18 35 35 H 1.08995 * 109.57605 * 296.63164 * 22 16 14 36 36 H 1.09002 * 109.57701 * 56.89269 * 22 16 14 37 37 H 1.08997 * 109.88034 * 120.47617 * 23 13 12 38 38 H 1.08999 * 109.87827 * 241.63926 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 1 0.5757 -2.5536 -0.8521 11 6 0.4755 -2.6841 1.3327 12 6 0.3803 -4.2275 1.4252 13 7 1.6656 -4.7175 0.8949 14 6 2.2288 -5.9089 1.1771 15 8 1.7196 -6.6409 1.9992 16 6 3.4915 -6.3315 0.4713 17 1 4.0421 -5.4462 0.1536 18 6 4.3557 -7.1501 1.4259 19 6 5.7494 -7.3652 0.8422 20 6 5.6749 -8.3380 -0.3378 21 16 4.6569 -7.5952 -1.6474 22 6 3.1306 -7.1731 -0.7556 23 6 2.2282 -3.6937 0.0021 24 1 -0.4850 0.8400 -0.0004 25 1 1.0380 -2.2763 2.1726 26 1 -0.5156 -2.2344 1.2732 27 1 -0.4460 -4.5939 0.8159 28 1 0.2546 -4.5383 2.4624 29 1 4.4431 -6.6206 2.3747 30 1 3.8835 -8.1174 1.5977 31 1 6.4039 -7.7773 1.6102 32 1 6.1494 -6.4109 0.4997 33 1 5.2231 -9.2746 -0.0109 34 1 6.6785 -8.5277 -0.7186 35 1 2.6292 -8.0870 -0.4370 36 1 2.4698 -6.6026 -1.4083 37 1 3.2030 -3.3752 0.3712 38 1 2.3243 -4.0943 -1.0071 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260103869.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:39 Heat of formation + Delta-G solvation = -55.945408 kcal Electronic energy + Delta-G solvation = -18928.890898 eV Core-core repulsion = 16089.369541 eV Total energy + Delta-G solvation = -2839.521357 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -39.85026 -37.22505 -36.03625 -33.05258 -31.99515 -30.18777 -28.50149 -27.39986 -25.05380 -24.13221 -22.19644 -20.86896 -19.87999 -18.61191 -17.39301 -16.53210 -16.23989 -15.50718 -15.27239 -14.68118 -14.59586 -14.33451 -13.83013 -13.52167 -13.20664 -12.76399 -12.69021 -12.51264 -12.14436 -11.63512 -11.53974 -11.47772 -11.24165 -11.12761 -11.00937 -10.96667 -10.82446 -10.48916 -9.97071 -9.83471 -9.61497 -9.23808 -9.03478 -8.53029 -8.06471 -7.80087 -6.15378 -4.19458 1.61228 2.30906 2.96146 3.24196 3.31746 3.33829 3.50067 4.33619 4.51200 4.59737 4.62745 4.80108 4.93800 5.07802 5.18259 5.29410 5.36798 5.52473 5.54534 5.67878 5.76923 5.77791 5.88351 5.94935 5.99131 6.11338 6.16951 6.24452 6.46019 6.76396 6.97764 7.05974 7.41625 7.62898 7.82742 8.05348 8.21088 8.52395 8.81942 9.45866 10.94584 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.024601 B = 0.004785 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.908477 B = 5850.247092 C = 6400.556218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.066 3.934 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.518 4.518 8 H 0.059 0.941 9 C 0.045 3.955 10 H 0.043 0.957 11 C -0.110 4.110 12 C 0.098 3.902 13 N -0.607 5.607 14 C 0.529 3.471 15 O -0.559 6.559 16 C -0.104 4.104 17 H 0.104 0.896 18 C -0.111 4.111 19 C -0.121 4.121 20 C -0.084 4.084 21 S -0.257 6.257 22 C -0.066 4.066 23 C 0.100 3.900 24 H 0.262 0.738 25 H 0.059 0.941 26 H 0.081 0.919 27 H 0.057 0.943 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.083 0.917 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.109 0.891 37 H 0.063 0.937 38 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.233 -12.773 -0.127 15.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.525 5.525 2 C -0.137 4.137 3 Si 0.721 3.279 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.556 4.556 8 H 0.077 0.923 9 C 0.026 3.974 10 H 0.062 0.938 11 C -0.149 4.149 12 C -0.024 4.024 13 N -0.339 5.339 14 C 0.315 3.685 15 O -0.438 6.438 16 C -0.127 4.127 17 H 0.122 0.878 18 C -0.149 4.149 19 C -0.160 4.160 20 C -0.232 4.232 21 S -0.030 6.030 22 C -0.215 4.215 23 C -0.022 4.022 24 H 0.072 0.928 25 H 0.078 0.922 26 H 0.100 0.900 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.094 0.906 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.097 0.903 33 H 0.102 0.898 34 H 0.122 0.878 35 H 0.108 0.892 36 H 0.127 0.873 37 H 0.081 0.919 38 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 8.098 -12.958 -0.796 15.301 hybrid contribution 0.074 0.843 1.166 1.440 sum 8.172 -12.115 0.370 14.618 Atomic orbital electron populations 1.69939 1.05951 1.26879 1.49693 1.24953 0.94863 0.99187 0.94657 0.86566 0.79856 0.83241 0.78202 1.20562 1.21199 1.19844 1.21002 0.92823 0.89842 1.51918 0.92258 1.19704 0.92670 0.90873 0.94186 0.93842 1.22783 1.02372 0.89409 1.00344 1.22453 0.84527 0.97256 0.98140 1.48777 1.22661 1.16000 1.46433 1.20042 0.85420 0.80484 0.82523 1.90642 1.64949 1.53256 1.34978 1.21487 0.95416 1.00350 0.95465 0.87809 1.21368 0.94064 1.00966 0.98470 1.21758 0.97436 0.99949 0.96855 1.23492 1.02043 1.00778 0.96920 1.86916 1.16627 1.79934 1.19508 1.23306 0.97015 1.02892 0.98242 1.22503 0.99187 0.89050 0.91450 0.92798 0.92243 0.90008 0.92463 0.91915 0.90606 0.90818 0.90463 0.90277 0.89815 0.87777 0.89210 0.87271 0.91874 0.93052 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.03 12.50 55.43 0.69 -23.34 16 2 C 0.07 1.72 5.36 -17.82 -0.10 1.63 16 3 Si 0.89 20.24 29.54 -169.99 -5.02 15.22 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 6 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 7 C -0.52 -13.14 8.47 -34.44 -0.29 -13.43 16 8 H 0.06 1.48 7.53 -52.48 -0.40 1.08 16 9 C 0.04 1.02 2.78 -89.94 -0.25 0.77 16 10 H 0.04 1.07 8.14 -51.93 -0.42 0.65 16 11 C -0.11 -2.40 5.95 -24.59 -0.15 -2.54 16 12 C 0.10 1.89 6.93 -2.53 -0.02 1.88 16 13 N -0.61 -11.34 3.33 -170.52 -0.57 -11.91 16 14 C 0.53 9.34 6.81 -10.98 -0.07 9.27 16 15 O -0.56 -11.35 16.66 5.56 0.09 -11.26 16 16 C -0.10 -1.44 2.07 -91.93 -0.19 -1.63 16 17 H 0.10 1.44 6.87 -51.93 -0.36 1.08 16 18 C -0.11 -1.33 4.43 -27.14 -0.12 -1.45 16 19 C -0.12 -1.14 5.76 -26.87 -0.15 -1.29 16 20 C -0.08 -0.77 6.45 37.21 0.24 -0.53 16 21 S -0.26 -3.06 22.33 -107.50 -2.40 -5.46 16 22 C -0.07 -0.84 5.71 37.21 0.21 -0.63 16 23 C 0.10 1.91 5.59 -3.06 -0.02 1.90 16 24 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 25 H 0.06 1.35 8.04 -51.93 -0.42 0.93 16 26 H 0.08 1.88 7.77 -51.93 -0.40 1.48 16 27 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.06 1.19 7.99 -51.93 -0.42 0.78 16 29 H 0.08 0.96 8.08 -51.93 -0.42 0.54 16 30 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 31 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.08 0.77 8.05 -51.93 -0.42 0.36 16 33 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.09 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.11 1.43 8.14 -51.93 -0.42 1.01 16 37 H 0.06 1.20 7.41 -51.93 -0.38 0.82 16 38 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 LS Contribution 315.24 15.07 4.75 4.75 Total: -1.00 -27.92 315.24 -9.50 -37.42 By element: Atomic # 1 Polarization: 6.80 SS G_CDS: -6.15 Total: 0.65 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -0.91 Total: -6.07 kcal Atomic # 7 Polarization: -35.37 SS G_CDS: 0.13 Total: -35.25 kcal Atomic # 8 Polarization: -11.35 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -5.02 Total: 15.22 kcal Atomic # 16 Polarization: -3.06 SS G_CDS: -2.40 Total: -5.46 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.92 -9.50 -37.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260103869.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.522 kcal (2) G-P(sol) polarization free energy of solvation -27.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds