Wall clock time and date at job start Mon Mar 30 2020 05:36:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86790 * 120.00018 * 2 1 4 4 H 1.48502 * 109.47264 * 270.00018 * 3 2 1 5 5 H 1.48497 * 109.47355 * 29.99572 * 3 2 1 6 6 H 1.48503 * 109.47411 * 149.99876 * 3 2 1 7 7 C 1.37879 * 119.99730 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99407 * 180.02562 * 7 2 1 9 9 C 1.50701 * 120.00398 * 359.97438 * 7 2 1 10 10 H 1.08997 * 110.63473 * 56.85856 * 9 7 2 11 11 C 1.55151 * 110.72002 * 293.52471 * 9 7 2 12 12 C 1.54909 * 101.57806 * 206.13466 * 11 9 7 13 13 N 1.47419 * 104.83694 * 37.00810 * 12 11 9 14 14 C 1.34776 * 125.65064 * 156.13662 * 13 12 11 15 15 O 1.21283 * 120.00071 * 354.73839 * 14 13 12 16 16 C 1.50703 * 120.00018 * 174.74142 * 14 13 12 17 17 H 1.08995 * 109.38817 * 26.03934 * 16 14 13 18 18 C 1.52580 * 109.38883 * 145.84128 * 16 14 13 19 19 C 1.52622 * 110.70251 * 190.92188 * 18 16 14 20 20 C 1.53103 * 109.87197 * 289.18183 * 19 18 16 21 21 S 1.81745 * 108.84006 * 63.06125 * 20 19 18 22 22 C 1.53098 * 109.38724 * 266.23770 * 16 14 13 23 23 C 1.47029 * 108.70171 * 335.87416 * 13 12 11 24 24 H 0.96994 * 120.00169 * 0.02562 * 1 2 3 25 25 H 1.09005 * 111.00341 * 324.20561 * 11 9 7 26 26 H 1.08997 * 111.00917 * 88.05675 * 11 9 7 27 27 H 1.09001 * 110.36694 * 278.16335 * 12 11 9 28 28 H 1.09003 * 110.36578 * 155.85104 * 12 11 9 29 29 H 1.08998 * 109.23144 * 311.14610 * 18 16 14 30 30 H 1.09005 * 109.22787 * 70.50452 * 18 16 14 31 31 H 1.09000 * 109.40185 * 169.07526 * 19 18 16 32 32 H 1.09001 * 109.38580 * 49.27102 * 19 18 16 33 33 H 1.09000 * 109.57219 * 303.25464 * 20 19 18 34 34 H 1.09004 * 109.57517 * 182.86828 * 20 19 18 35 35 H 1.08995 * 109.57605 * 296.63164 * 22 16 14 36 36 H 1.09002 * 109.57701 * 56.89269 * 22 16 14 37 37 H 1.08997 * 109.88034 * 120.47617 * 23 13 12 38 38 H 1.08999 * 109.87827 * 241.63926 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.6999 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4992 0.0017 10 1 0.5757 -2.5536 -0.8521 11 6 0.4755 -2.6841 1.3327 12 6 0.3803 -4.2275 1.4252 13 7 1.6656 -4.7175 0.8949 14 6 2.2288 -5.9089 1.1771 15 8 1.7196 -6.6409 1.9992 16 6 3.4915 -6.3315 0.4713 17 1 4.0421 -5.4462 0.1536 18 6 4.3557 -7.1501 1.4259 19 6 5.7494 -7.3652 0.8422 20 6 5.6749 -8.3380 -0.3378 21 16 4.6569 -7.5952 -1.6474 22 6 3.1306 -7.1731 -0.7556 23 6 2.2282 -3.6937 0.0021 24 1 -0.4850 0.8400 -0.0004 25 1 1.0380 -2.2763 2.1726 26 1 -0.5156 -2.2344 1.2732 27 1 -0.4460 -4.5939 0.8159 28 1 0.2546 -4.5383 2.4624 29 1 4.4431 -6.6206 2.3747 30 1 3.8835 -8.1174 1.5977 31 1 6.4039 -7.7773 1.6102 32 1 6.1494 -6.4109 0.4997 33 1 5.2231 -9.2746 -0.0109 34 1 6.6785 -8.5277 -0.7186 35 1 2.6292 -8.0870 -0.4370 36 1 2.4698 -6.6026 -1.4083 37 1 3.2030 -3.3752 0.3712 38 1 2.3243 -4.0943 -1.0071 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260103869.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:39 Heat of formation + Delta-G solvation = -70.316071 kcal Electronic energy + Delta-G solvation = -18929.514057 eV Core-core repulsion = 16089.369541 eV Total energy + Delta-G solvation = -2840.144515 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.28391 -38.71908 -37.20190 -34.91945 -33.09903 -31.81356 -30.16224 -28.30737 -26.85501 -25.42877 -23.47269 -22.02950 -21.60131 -19.97332 -18.88064 -18.15087 -17.57507 -16.71649 -16.65818 -16.43576 -15.71675 -15.45781 -15.21704 -14.46157 -14.42981 -14.32422 -14.07339 -13.87659 -13.52803 -13.16525 -13.05946 -12.90570 -12.69973 -12.52545 -12.46729 -12.26241 -12.05038 -11.94021 -11.62780 -11.37137 -10.97135 -10.90684 -10.55096 -10.49799 -9.61603 -8.72501 -8.14303 -6.23674 0.69858 1.35266 1.45006 1.47179 1.55675 1.64596 2.08118 2.45222 3.18644 3.46496 3.52412 3.64940 3.87698 4.01952 4.09793 4.12304 4.23868 4.33662 4.35556 4.50523 4.52256 4.60131 4.63332 4.75732 4.82257 4.85287 4.99439 5.03831 5.06861 5.22204 5.27111 5.34753 5.56346 5.72894 5.87648 6.26786 6.56600 6.84640 7.07069 7.44631 8.95331 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.024601 B = 0.004785 C = 0.004374 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1137.908477 B = 5850.247092 C = 6400.556218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.018 3.982 3 Si 0.953 3.047 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.267 1.267 7 C -0.529 4.529 8 H 0.062 0.938 9 C 0.036 3.964 10 H 0.020 0.980 11 C -0.100 4.100 12 C 0.106 3.894 13 N -0.611 5.611 14 C 0.529 3.471 15 O -0.585 6.585 16 C -0.096 4.096 17 H 0.106 0.894 18 C -0.109 4.109 19 C -0.114 4.114 20 C -0.076 4.076 21 S -0.277 6.277 22 C -0.062 4.062 23 C 0.115 3.885 24 H 0.262 0.738 25 H 0.046 0.954 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.102 0.898 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.126 0.874 35 H 0.089 0.911 36 H 0.102 0.898 37 H 0.068 0.932 38 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.337 -13.672 -0.228 17.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.181 4.181 3 Si 0.779 3.221 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.191 1.191 7 C -0.567 4.567 8 H 0.080 0.920 9 C 0.017 3.983 10 H 0.038 0.962 11 C -0.139 4.139 12 C -0.017 4.017 13 N -0.343 5.343 14 C 0.317 3.683 15 O -0.466 6.466 16 C -0.119 4.119 17 H 0.124 0.876 18 C -0.147 4.147 19 C -0.153 4.153 20 C -0.224 4.224 21 S -0.050 6.050 22 C -0.210 4.210 23 C -0.007 4.007 24 H 0.071 0.929 25 H 0.064 0.936 26 H 0.081 0.919 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.086 0.914 30 H 0.088 0.912 31 H 0.120 0.880 32 H 0.096 0.904 33 H 0.111 0.889 34 H 0.144 0.856 35 H 0.107 0.893 36 H 0.121 0.879 37 H 0.086 0.914 38 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 10.222 -13.869 -0.905 17.252 hybrid contribution -0.584 1.079 1.210 1.723 sum 9.638 -12.790 0.305 16.018 Atomic orbital electron populations 1.70054 1.07233 1.27457 1.50834 1.25683 0.95572 1.02303 0.94576 0.85624 0.78773 0.79466 0.78219 1.20132 1.21377 1.19134 1.21361 0.93184 0.90979 1.51203 0.91966 1.19647 0.93143 0.91816 0.93656 0.96229 1.22539 1.00893 0.91178 0.99288 1.22294 0.85450 0.95323 0.98599 1.48819 1.22469 1.16516 1.46514 1.20728 0.86105 0.79480 0.81980 1.90627 1.65996 1.53783 1.36233 1.21512 0.93500 1.00948 0.95929 0.87604 1.21382 0.95332 1.00164 0.97787 1.21724 0.95859 1.00230 0.97457 1.23613 1.02446 1.00692 0.95631 1.87022 1.16604 1.80294 1.21087 1.23192 0.97713 1.02517 0.97608 1.22247 0.98049 0.87827 0.92541 0.92942 0.93551 0.91878 0.91710 0.91643 0.91416 0.91193 0.87968 0.90358 0.88851 0.85604 0.89265 0.87935 0.91416 0.91330 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -50.48 12.50 21.45 0.27 -50.21 16 2 C 0.02 0.96 5.36 84.65 0.45 1.41 16 3 Si 0.95 41.37 29.54 68.60 2.03 43.40 16 4 H -0.28 -11.71 7.11 99.48 0.71 -11.01 16 5 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 6 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 7 C -0.53 -26.86 8.47 25.60 0.22 -26.65 16 8 H 0.06 3.06 7.53 -2.91 -0.02 3.03 16 9 C 0.04 1.68 2.78 -10.35 -0.03 1.65 16 10 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 11 C -0.10 -4.44 5.95 31.98 0.19 -4.25 16 12 C 0.11 4.08 6.93 86.86 0.60 4.68 16 13 N -0.61 -22.46 3.33 -811.79 -2.70 -25.16 16 14 C 0.53 18.18 6.81 87.66 0.60 18.78 16 15 O -0.59 -23.37 16.66 -3.04 -0.05 -23.42 16 16 C -0.10 -2.51 2.07 -11.65 -0.02 -2.53 16 17 H 0.11 2.74 6.87 -2.39 -0.02 2.72 16 18 C -0.11 -2.38 4.43 30.33 0.13 -2.25 16 19 C -0.11 -1.77 5.76 30.50 0.18 -1.60 16 20 C -0.08 -1.14 6.45 72.02 0.46 -0.67 16 21 S -0.28 -6.00 22.33 -56.49 -1.26 -7.27 16 22 C -0.06 -1.48 5.71 72.02 0.41 -1.07 16 23 C 0.12 4.32 5.59 86.73 0.48 4.81 16 24 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 25 H 0.05 2.14 8.04 -2.38 -0.02 2.12 16 26 H 0.06 3.00 7.77 -2.39 -0.02 2.98 16 27 H 0.06 2.39 8.14 -2.39 -0.02 2.38 16 28 H 0.07 2.49 7.99 -2.39 -0.02 2.47 16 29 H 0.07 1.60 8.08 -2.39 -0.02 1.58 16 30 H 0.07 1.60 8.07 -2.38 -0.02 1.58 16 31 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.08 1.28 8.05 -2.39 -0.02 1.26 16 33 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 34 H 0.13 1.41 8.14 -2.39 -0.02 1.39 16 35 H 0.09 2.14 8.14 -2.39 -0.02 2.12 16 36 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 37 H 0.07 2.49 7.41 -2.39 -0.02 2.47 16 38 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -59.23 315.24 2.98 -56.24 By element: Atomic # 1 Polarization: 13.08 SS G_CDS: 1.02 Total: 14.10 kcal Atomic # 6 Polarization: -11.37 SS G_CDS: 3.68 Total: -7.69 kcal Atomic # 7 Polarization: -72.94 SS G_CDS: -2.43 Total: -75.37 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -0.05 Total: -23.42 kcal Atomic # 14 Polarization: 41.37 SS G_CDS: 2.03 Total: 43.40 kcal Atomic # 16 Polarization: -6.00 SS G_CDS: -1.26 Total: -7.27 kcal Total: -59.23 2.98 -56.24 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260103869.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.071 kcal (2) G-P(sol) polarization free energy of solvation -59.228 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.299 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds