Wall clock time and date at job start Mon Mar 30 2020 05:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00155 * 2 1 4 4 H 1.48495 * 109.47006 * 269.99897 * 3 2 1 5 5 H 1.48498 * 109.47380 * 29.99997 * 3 2 1 6 6 H 1.48497 * 109.46989 * 150.00092 * 3 2 1 7 7 C 1.37877 * 119.99662 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00193 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00156 * 359.97438 * 7 2 1 10 10 H 1.08993 * 110.91789 * 303.90739 * 9 7 2 11 11 C 1.55164 * 111.00071 * 67.80525 * 9 7 2 12 12 C 1.54336 * 103.01563 * 153.37995 * 11 9 7 13 13 N 1.47018 * 107.27109 * 338.13975 * 12 11 9 14 14 C 1.34769 * 125.64969 * 178.84986 * 13 12 11 15 15 O 1.21280 * 120.00323 * 184.76385 * 14 13 12 16 16 C 1.50706 * 120.00211 * 4.75952 * 14 13 12 17 17 H 1.09001 * 109.38398 * 24.95634 * 16 14 13 18 18 C 1.52578 * 109.39080 * 144.66098 * 16 14 13 19 19 C 1.52580 * 110.72684 * 190.82364 * 18 16 14 20 20 C 1.53097 * 109.95870 * 289.32813 * 19 18 16 21 21 S 1.81748 * 108.84127 * 63.02179 * 20 19 18 22 22 C 1.53096 * 109.38964 * 265.15825 * 16 14 13 23 23 C 1.47420 * 108.70161 * 358.58707 * 13 12 11 24 24 H 0.97008 * 119.99690 * 359.97438 * 1 2 3 25 25 H 1.09000 * 110.72037 * 271.93611 * 11 9 7 26 26 H 1.09000 * 110.71820 * 35.03944 * 11 9 7 27 27 H 1.09008 * 109.98771 * 218.66161 * 12 11 9 28 28 H 1.09004 * 109.77539 * 97.50241 * 12 11 9 29 29 H 1.08992 * 109.22524 * 311.14754 * 18 16 14 30 30 H 1.08998 * 109.22380 * 70.54658 * 18 16 14 31 31 H 1.08999 * 109.38966 * 169.17728 * 19 18 16 32 32 H 1.09009 * 109.38799 * 49.47504 * 19 18 16 33 33 H 1.09000 * 109.57529 * 303.21826 * 20 19 18 34 34 H 1.09000 * 109.57671 * 182.83209 * 20 19 18 35 35 H 1.09007 * 109.58004 * 57.01728 * 22 16 14 36 36 H 1.09001 * 109.68645 * 296.69660 * 22 16 14 37 37 H 1.09001 * 110.37305 * 143.19329 * 23 13 12 38 38 H 1.08999 * 110.36815 * 265.51566 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.5648 -2.5524 0.8447 11 6 0.4984 -2.7068 -1.3415 12 6 0.4003 -4.2432 -1.4507 13 7 1.4583 -4.8096 -0.6016 14 6 1.6919 -6.1228 -0.4086 15 8 2.5394 -6.4782 0.3827 16 6 0.8998 -7.1498 -1.1762 17 1 0.5377 -6.7078 -2.1044 18 6 1.7955 -8.3416 -1.5006 19 6 1.1138 -9.2740 -2.4976 20 6 -0.0516 -10.0006 -1.8210 21 16 -1.2893 -8.7731 -1.3066 22 6 -0.2927 -7.6070 -0.3319 23 6 2.2256 -3.7032 -0.0012 24 1 -0.4850 0.8401 0.0004 25 1 -0.4934 -2.2566 -1.3009 26 1 1.0724 -2.2980 -2.1731 27 1 0.5491 -4.5535 -2.4851 28 1 -0.5760 -4.5763 -1.0984 29 1 2.7313 -7.9814 -1.9280 30 1 2.0079 -8.8911 -0.5835 31 1 1.8353 -10.0062 -2.8600 32 1 0.7377 -8.6916 -3.3388 33 1 0.3127 -10.5403 -0.9468 34 1 -0.5023 -10.7015 -2.5236 35 1 -0.9011 -6.7439 -0.0615 36 1 0.0649 -8.0993 0.5725 37 1 2.5190 -3.9543 1.0181 38 1 3.1046 -3.4794 -0.6056 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260103874.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:42 Heat of formation + Delta-G solvation = -55.913898 kcal Electronic energy + Delta-G solvation = -18835.173183 eV Core-core repulsion = 15995.653193 eV Total energy + Delta-G solvation = -2839.519990 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.85916 -37.23226 -36.05025 -33.11263 -31.96575 -30.20826 -28.43675 -27.44820 -25.40270 -23.75888 -22.25984 -21.06559 -19.75404 -18.69111 -17.39358 -16.53479 -16.22564 -15.65820 -14.97163 -14.82046 -14.58229 -14.42426 -13.80761 -13.56418 -13.34336 -12.80282 -12.67326 -12.57006 -11.99440 -11.68472 -11.62892 -11.58537 -11.31364 -11.10754 -11.04570 -11.02760 -10.74179 -10.50183 -9.99570 -9.85203 -9.51618 -9.25680 -9.03190 -8.50808 -8.07261 -7.84183 -6.14153 -4.17836 1.57366 2.27332 2.95009 3.25297 3.32638 3.35517 3.49828 4.35936 4.45915 4.55249 4.57901 4.75570 4.88762 5.03104 5.19832 5.24568 5.31739 5.47835 5.51119 5.59346 5.64668 5.71227 5.78323 5.89334 5.98256 6.09305 6.18980 6.32415 6.56892 6.75604 6.94235 7.05113 7.40374 7.66222 7.85149 8.05523 8.24467 8.52843 8.84369 9.47518 10.96013 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.041359 B = 0.004087 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.828444 B = 6849.460206 C = 7190.736612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.066 3.934 3 Si 0.894 3.106 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.516 4.516 8 H 0.060 0.940 9 C 0.047 3.953 10 H 0.042 0.958 11 C -0.113 4.113 12 C 0.094 3.906 13 N -0.608 5.608 14 C 0.528 3.472 15 O -0.553 6.553 16 C -0.103 4.103 17 H 0.100 0.900 18 C -0.111 4.111 19 C -0.120 4.120 20 C -0.084 4.084 21 S -0.259 6.259 22 C -0.067 4.067 23 C 0.106 3.894 24 H 0.262 0.738 25 H 0.080 0.920 26 H 0.061 0.939 27 H 0.054 0.946 28 H 0.057 0.943 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.104 0.896 35 H 0.109 0.891 36 H 0.091 0.909 37 H 0.062 0.938 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.487 -15.983 -5.726 17.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.136 4.136 3 Si 0.722 3.278 4 H -0.206 1.206 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.555 4.555 8 H 0.078 0.922 9 C 0.027 3.973 10 H 0.060 0.940 11 C -0.152 4.152 12 C -0.028 4.028 13 N -0.340 5.340 14 C 0.314 3.686 15 O -0.432 6.432 16 C -0.126 4.126 17 H 0.119 0.881 18 C -0.149 4.149 19 C -0.159 4.159 20 C -0.232 4.232 21 S -0.032 6.032 22 C -0.216 4.216 23 C -0.015 4.015 24 H 0.072 0.928 25 H 0.099 0.901 26 H 0.079 0.921 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.102 0.898 34 H 0.122 0.878 35 H 0.128 0.872 36 H 0.109 0.891 37 H 0.081 0.919 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.318 -16.110 -5.515 17.185 hybrid contribution 1.567 0.973 0.185 1.853 sum -0.751 -15.138 -5.329 16.066 Atomic orbital electron populations 1.69944 1.05951 1.26847 1.49814 1.24953 0.94868 0.99178 0.94646 0.86554 0.79911 0.83171 0.78169 1.20600 1.21180 1.19800 1.20946 0.92973 0.89803 1.51754 0.92209 1.19837 0.92747 0.91043 0.93638 0.93957 1.22665 1.02703 0.88867 1.00950 1.22284 0.89715 0.97793 0.93052 1.48783 1.33156 1.04996 1.47072 1.20018 0.83680 0.82056 0.82895 1.90658 1.35611 1.80119 1.36860 1.21489 0.95513 0.95903 0.99719 0.88133 1.21363 0.98439 0.94989 1.00144 1.21738 0.96717 0.98775 0.98685 1.23488 0.97612 0.98541 1.03595 1.86903 1.18776 1.29073 1.68440 1.23335 0.97823 1.00803 0.99602 1.22630 0.95655 0.86088 0.97174 0.92823 0.90147 0.92065 0.92736 0.92496 0.90607 0.90710 0.90455 0.90424 0.89752 0.87776 0.87229 0.89050 0.91931 0.92227 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.25 12.62 55.43 0.70 -23.55 16 2 C 0.07 1.75 5.37 -17.82 -0.10 1.65 16 3 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 4 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 7 C -0.52 -13.49 8.49 -34.44 -0.29 -13.78 16 8 H 0.06 1.55 7.77 -52.49 -0.41 1.14 16 9 C 0.05 1.10 2.85 -89.62 -0.26 0.84 16 10 H 0.04 1.10 8.14 -51.93 -0.42 0.68 16 11 C -0.11 -2.37 5.90 -24.89 -0.15 -2.52 16 12 C 0.09 1.61 6.15 -3.06 -0.02 1.59 16 13 N -0.61 -11.34 3.33 -170.51 -0.57 -11.91 16 14 C 0.53 9.28 6.79 -10.99 -0.07 9.21 16 15 O -0.55 -11.49 16.68 5.56 0.09 -11.40 16 16 C -0.10 -1.36 2.00 -91.94 -0.18 -1.55 16 17 H 0.10 1.26 6.86 -51.93 -0.36 0.90 16 18 C -0.11 -1.28 4.45 -27.16 -0.12 -1.40 16 19 C -0.12 -1.05 5.75 -26.90 -0.15 -1.20 16 20 C -0.08 -0.73 6.45 37.21 0.24 -0.49 16 21 S -0.26 -2.94 22.33 -107.50 -2.40 -5.35 16 22 C -0.07 -0.84 5.71 37.21 0.21 -0.62 16 23 C 0.11 2.25 6.37 -2.53 -0.02 2.24 16 24 H 0.26 6.86 8.31 -40.82 -0.34 6.52 16 25 H 0.08 1.79 7.85 -51.93 -0.41 1.38 16 26 H 0.06 1.31 8.03 -51.93 -0.42 0.89 16 27 H 0.05 0.81 7.73 -51.92 -0.40 0.41 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 29 H 0.08 0.91 8.08 -51.93 -0.42 0.49 16 30 H 0.07 0.91 8.07 -51.93 -0.42 0.49 16 31 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.08 0.68 8.05 -51.92 -0.42 0.26 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.11 1.41 8.14 -51.92 -0.42 0.99 16 36 H 0.09 1.16 8.14 -51.93 -0.42 0.74 16 37 H 0.06 1.38 7.99 -51.93 -0.41 0.96 16 38 H 0.06 1.27 8.01 -51.93 -0.42 0.86 16 LS Contribution 315.86 15.07 4.76 4.76 Total: -1.00 -28.51 315.86 -9.52 -38.03 By element: Atomic # 1 Polarization: 6.14 SS G_CDS: -6.17 Total: -0.03 kcal Atomic # 6 Polarization: -5.12 SS G_CDS: -0.91 Total: -6.03 kcal Atomic # 7 Polarization: -35.60 SS G_CDS: 0.13 Total: -35.47 kcal Atomic # 8 Polarization: -11.49 SS G_CDS: 0.09 Total: -11.40 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 16 Polarization: -2.94 SS G_CDS: -2.40 Total: -5.35 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -28.51 -9.52 -38.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260103874.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.886 kcal (2) G-P(sol) polarization free energy of solvation -28.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.398 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds