Wall clock time and date at job start Mon Mar 30 2020 05:36:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86796 * 120.00155 * 2 1 4 4 H 1.48495 * 109.47006 * 269.99897 * 3 2 1 5 5 H 1.48498 * 109.47380 * 29.99997 * 3 2 1 6 6 H 1.48497 * 109.46989 * 150.00092 * 3 2 1 7 7 C 1.37877 * 119.99662 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00193 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00156 * 359.97438 * 7 2 1 10 10 H 1.08993 * 110.91789 * 303.90739 * 9 7 2 11 11 C 1.55164 * 111.00071 * 67.80525 * 9 7 2 12 12 C 1.54336 * 103.01563 * 153.37995 * 11 9 7 13 13 N 1.47018 * 107.27109 * 338.13975 * 12 11 9 14 14 C 1.34769 * 125.64969 * 178.84986 * 13 12 11 15 15 O 1.21280 * 120.00323 * 184.76385 * 14 13 12 16 16 C 1.50706 * 120.00211 * 4.75952 * 14 13 12 17 17 H 1.09001 * 109.38398 * 24.95634 * 16 14 13 18 18 C 1.52578 * 109.39080 * 144.66098 * 16 14 13 19 19 C 1.52580 * 110.72684 * 190.82364 * 18 16 14 20 20 C 1.53097 * 109.95870 * 289.32813 * 19 18 16 21 21 S 1.81748 * 108.84127 * 63.02179 * 20 19 18 22 22 C 1.53096 * 109.38964 * 265.15825 * 16 14 13 23 23 C 1.47420 * 108.70161 * 358.58707 * 13 12 11 24 24 H 0.97008 * 119.99690 * 359.97438 * 1 2 3 25 25 H 1.09000 * 110.72037 * 271.93611 * 11 9 7 26 26 H 1.09000 * 110.71820 * 35.03944 * 11 9 7 27 27 H 1.09008 * 109.98771 * 218.66161 * 12 11 9 28 28 H 1.09004 * 109.77539 * 97.50241 * 12 11 9 29 29 H 1.08992 * 109.22524 * 311.14754 * 18 16 14 30 30 H 1.08998 * 109.22380 * 70.54658 * 18 16 14 31 31 H 1.08999 * 109.38966 * 169.17728 * 19 18 16 32 32 H 1.09009 * 109.38799 * 49.47504 * 19 18 16 33 33 H 1.09000 * 109.57529 * 303.21826 * 20 19 18 34 34 H 1.09000 * 109.57671 * 182.83209 * 20 19 18 35 35 H 1.09007 * 109.58004 * 57.01728 * 22 16 14 36 36 H 1.09001 * 109.68645 * 296.69660 * 22 16 14 37 37 H 1.09001 * 110.37305 * 143.19329 * 23 13 12 38 38 H 1.08999 * 110.36815 * 265.51566 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4400 0.7000 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 1 0.5648 -2.5524 0.8447 11 6 0.4984 -2.7068 -1.3415 12 6 0.4003 -4.2432 -1.4507 13 7 1.4583 -4.8096 -0.6016 14 6 1.6919 -6.1228 -0.4086 15 8 2.5394 -6.4782 0.3827 16 6 0.8998 -7.1498 -1.1762 17 1 0.5377 -6.7078 -2.1044 18 6 1.7955 -8.3416 -1.5006 19 6 1.1138 -9.2740 -2.4976 20 6 -0.0516 -10.0006 -1.8210 21 16 -1.2893 -8.7731 -1.3066 22 6 -0.2927 -7.6070 -0.3319 23 6 2.2256 -3.7032 -0.0012 24 1 -0.4850 0.8401 0.0004 25 1 -0.4934 -2.2566 -1.3009 26 1 1.0724 -2.2980 -2.1731 27 1 0.5491 -4.5535 -2.4851 28 1 -0.5760 -4.5763 -1.0984 29 1 2.7313 -7.9814 -1.9280 30 1 2.0079 -8.8911 -0.5835 31 1 1.8353 -10.0062 -2.8600 32 1 0.7377 -8.6916 -3.3388 33 1 0.3127 -10.5403 -0.9468 34 1 -0.5023 -10.7015 -2.5236 35 1 -0.9011 -6.7439 -0.0615 36 1 0.0649 -8.0993 0.5725 37 1 2.5190 -3.9543 1.0181 38 1 3.1046 -3.4794 -0.6056 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260103874.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:42 Heat of formation + Delta-G solvation = -71.208735 kcal Electronic energy + Delta-G solvation = -18835.836417 eV Core-core repulsion = 15995.653193 eV Total energy + Delta-G solvation = -2840.183224 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.28325 -38.71348 -37.19688 -34.99382 -33.06869 -31.82534 -30.09069 -28.32025 -27.16363 -25.09674 -23.58023 -22.14742 -21.47966 -20.03956 -18.83239 -18.22651 -17.41136 -16.99634 -16.55909 -16.09291 -16.03584 -15.41815 -15.20889 -14.52055 -14.41595 -14.35653 -14.03196 -13.89529 -13.51377 -13.33071 -13.02325 -12.93165 -12.63505 -12.53479 -12.46863 -12.31848 -12.02396 -11.92941 -11.63516 -11.35412 -10.98633 -10.92024 -10.55142 -10.51697 -9.61562 -8.72685 -8.17197 -6.26988 0.69383 1.35708 1.43056 1.44907 1.54338 1.63952 2.07715 2.43977 3.15089 3.46581 3.51613 3.64417 3.87921 4.01804 4.04503 4.12390 4.27031 4.31160 4.40292 4.48311 4.50859 4.59597 4.69940 4.77505 4.79229 4.83045 4.99741 5.04162 5.05353 5.22883 5.26836 5.35771 5.55135 5.74472 5.85097 6.25648 6.59676 6.79721 7.07938 7.41268 8.92552 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.041359 B = 0.004087 C = 0.003893 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 676.828444 B = 6849.460206 C = 7190.736612 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.914 5.914 2 C 0.021 3.979 3 Si 0.955 3.045 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.271 1.271 7 C -0.535 4.535 8 H 0.056 0.944 9 C 0.040 3.960 10 H 0.010 0.990 11 C -0.104 4.104 12 C 0.105 3.895 13 N -0.613 5.613 14 C 0.526 3.474 15 O -0.589 6.589 16 C -0.091 4.091 17 H 0.115 0.885 18 C -0.110 4.110 19 C -0.112 4.112 20 C -0.078 4.078 21 S -0.273 6.273 22 C -0.065 4.065 23 C 0.116 3.884 24 H 0.263 0.737 25 H 0.064 0.936 26 H 0.055 0.945 27 H 0.089 0.911 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.065 0.935 31 H 0.101 0.899 32 H 0.083 0.917 33 H 0.089 0.911 34 H 0.127 0.873 35 H 0.102 0.898 36 H 0.083 0.917 37 H 0.046 0.954 38 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.562 -17.408 -7.448 18.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.179 4.179 3 Si 0.781 3.219 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.573 4.573 8 H 0.074 0.926 9 C 0.021 3.979 10 H 0.028 0.972 11 C -0.143 4.143 12 C -0.017 4.017 13 N -0.344 5.344 14 C 0.314 3.686 15 O -0.470 6.470 16 C -0.114 4.114 17 H 0.133 0.867 18 C -0.148 4.148 19 C -0.151 4.151 20 C -0.226 4.226 21 S -0.045 6.045 22 C -0.214 4.214 23 C -0.006 4.006 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.074 0.926 27 H 0.107 0.893 28 H 0.092 0.908 29 H 0.088 0.912 30 H 0.083 0.917 31 H 0.120 0.880 32 H 0.101 0.899 33 H 0.108 0.892 34 H 0.145 0.855 35 H 0.121 0.879 36 H 0.102 0.898 37 H 0.065 0.935 38 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -2.404 -17.551 -7.251 19.141 hybrid contribution 1.601 1.367 0.763 2.240 sum -0.803 -16.184 -6.487 17.454 Atomic orbital electron populations 1.70046 1.07119 1.27584 1.50512 1.25663 0.95646 1.02209 0.94340 0.85596 0.78629 0.79293 0.78395 1.19773 1.20982 1.19587 1.21260 0.93057 0.91221 1.51808 0.92623 1.19726 0.92889 0.91318 0.93989 0.97174 1.22434 1.01062 0.91877 0.98920 1.22251 0.90038 0.94710 0.94735 1.48836 1.33270 1.05058 1.47278 1.20859 0.83325 0.82015 0.82412 1.90638 1.37312 1.80544 1.38507 1.21510 0.95350 0.95158 0.99387 0.86735 1.21386 0.98169 0.94660 1.00604 1.21703 0.96942 0.98668 0.97748 1.23623 0.96757 0.97856 1.04339 1.86989 1.19861 1.29557 1.68121 1.23214 0.97536 1.01087 0.99560 1.22282 0.95345 0.86400 0.96604 0.92762 0.91771 0.92635 0.89318 0.90792 0.91180 0.91668 0.88042 0.89851 0.89196 0.85487 0.87947 0.89788 0.93511 0.92387 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -50.70 12.62 21.45 0.27 -50.43 16 2 C 0.02 1.14 5.37 84.66 0.45 1.60 16 3 Si 0.96 42.23 29.54 68.60 2.03 44.25 16 4 H -0.27 -11.64 7.11 99.48 0.71 -10.94 16 5 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 6 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 7 C -0.54 -28.54 8.49 25.60 0.22 -28.32 16 8 H 0.06 2.94 7.77 -2.91 -0.02 2.91 16 9 C 0.04 1.95 2.85 -10.14 -0.03 1.92 16 10 H 0.01 0.55 8.14 -2.39 -0.02 0.53 16 11 C -0.10 -4.39 5.90 31.79 0.19 -4.20 16 12 C 0.10 3.41 6.15 86.73 0.53 3.95 16 13 N -0.61 -22.58 3.33 -811.77 -2.70 -25.28 16 14 C 0.53 18.17 6.79 87.66 0.60 18.77 16 15 O -0.59 -24.60 16.68 -3.03 -0.05 -24.66 16 16 C -0.09 -2.24 2.00 -11.65 -0.02 -2.26 16 17 H 0.11 2.51 6.86 -2.39 -0.02 2.50 16 18 C -0.11 -2.29 4.45 30.31 0.13 -2.15 16 19 C -0.11 -1.54 5.75 30.49 0.18 -1.36 16 20 C -0.08 -1.08 6.45 72.01 0.46 -0.62 16 21 S -0.27 -5.54 22.33 -56.49 -1.26 -6.80 16 22 C -0.07 -1.54 5.71 72.01 0.41 -1.13 16 23 C 0.12 5.06 6.37 86.86 0.55 5.61 16 24 H 0.26 13.91 8.31 -92.70 -0.77 13.14 16 25 H 0.06 2.89 7.85 -2.39 -0.02 2.87 16 26 H 0.05 2.36 8.03 -2.39 -0.02 2.35 16 27 H 0.09 2.35 7.73 -2.38 -0.02 2.33 16 28 H 0.07 2.20 8.14 -2.39 -0.02 2.18 16 29 H 0.07 1.54 8.08 -2.39 -0.02 1.53 16 30 H 0.06 1.48 8.07 -2.39 -0.02 1.46 16 31 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.08 1.11 8.05 -2.38 -0.02 1.09 16 33 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 34 H 0.13 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.10 2.54 8.14 -2.38 -0.02 2.52 16 36 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.05 2.14 7.99 -2.39 -0.02 2.12 16 38 H 0.06 2.52 8.01 -2.39 -0.02 2.50 16 Total: -1.00 -62.34 315.86 2.98 -59.35 By element: Atomic # 1 Polarization: 10.75 SS G_CDS: 1.02 Total: 11.77 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: 3.68 Total: -8.20 kcal Atomic # 7 Polarization: -73.29 SS G_CDS: -2.43 Total: -75.71 kcal Atomic # 8 Polarization: -24.60 SS G_CDS: -0.05 Total: -24.66 kcal Atomic # 14 Polarization: 42.23 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 16 Polarization: -5.54 SS G_CDS: -1.26 Total: -6.80 kcal Total: -62.34 2.98 -59.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260103874.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.856 kcal (2) G-P(sol) polarization free energy of solvation -62.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds