Wall clock time and date at job start Mon Mar 30 2020 05:44:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30843 * 125.89387 * 2 1 4 4 N 1.40087 * 108.20160 * 179.76634 * 3 2 1 5 5 C 1.46496 * 126.03518 * 180.28607 * 4 3 2 6 6 C 1.52996 * 109.47200 * 270.15788 * 5 4 3 7 7 O 1.42905 * 109.47141 * 180.02562 * 6 5 4 8 8 C 1.42898 * 114.00159 * 180.02562 * 7 6 5 9 9 C 1.50701 * 109.47258 * 180.02562 * 8 7 6 10 10 H 1.07996 * 119.99598 * 359.97438 * 9 8 7 11 11 C 1.37871 * 120.00030 * 180.02562 * 9 8 7 12 12 N 1.31519 * 119.99934 * 359.97438 * 11 9 8 13 13 Si 1.86802 * 120.00095 * 179.97438 * 11 9 8 14 14 H 1.48499 * 109.46932 * 359.97438 * 13 11 9 15 15 H 1.48502 * 109.47264 * 119.99889 * 13 11 9 16 16 H 1.48502 * 109.47038 * 239.99823 * 13 11 9 17 17 C 1.34947 * 107.92445 * 0.42444 * 4 3 2 18 18 C 1.50703 * 126.12611 * 179.84675 * 17 4 3 19 19 C 1.35315 * 107.74800 * 359.58148 * 17 4 3 20 20 N 1.48023 * 126.03958 * 180.24270 * 19 17 4 21 21 O 1.21799 * 120.00085 * 90.00269 * 20 19 17 22 22 O 1.21798 * 119.99797 * 269.99845 * 20 19 17 23 23 H 1.09001 * 109.46858 * 269.96915 * 1 2 3 24 24 H 1.08992 * 109.47313 * 29.97194 * 1 2 3 25 25 H 1.08995 * 109.46662 * 149.97506 * 1 2 3 26 26 H 1.09003 * 109.47267 * 30.16399 * 5 4 3 27 27 H 1.09004 * 109.47019 * 150.15681 * 5 4 3 28 28 H 1.09004 * 109.47468 * 299.99912 * 6 5 4 29 29 H 1.08999 * 109.47502 * 60.00700 * 6 5 4 30 30 H 1.09000 * 109.47427 * 300.00156 * 8 7 6 31 31 H 1.09000 * 109.47180 * 60.00226 * 8 7 6 32 32 H 0.97004 * 119.99678 * 180.02562 * 12 11 9 33 33 H 1.09002 * 109.47152 * 269.71323 * 18 17 4 34 34 H 1.09001 * 109.46980 * 149.71424 * 18 17 4 35 35 H 1.09004 * 109.47113 * 29.71405 * 18 17 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2742 1.0600 0.0000 4 7 3.6088 0.6342 0.0054 5 6 4.7898 1.5010 0.0132 6 6 5.2056 1.8093 -1.4266 7 8 6.3580 2.6543 -1.4190 8 6 6.8305 3.0046 -2.7213 9 6 8.0420 3.8918 -2.5944 10 1 8.4137 4.1614 -1.6169 11 6 8.6753 4.3600 -3.7260 12 7 8.2222 4.0319 -4.9164 13 14 10.1766 5.4603 -3.5687 14 1 10.4812 5.6794 -2.1319 15 1 11.3379 4.8104 -4.2279 16 1 9.9039 6.7661 -4.2212 17 6 3.6143 -0.7152 -0.0008 18 6 4.8351 -1.5987 -0.0014 19 6 2.3272 -1.1329 -0.0005 20 7 1.8684 -2.5403 -0.0012 21 8 1.6800 -3.1199 1.0534 22 8 1.6791 -3.1186 -1.0563 23 1 -0.3633 -0.0006 1.0277 24 1 -0.3633 0.8902 -0.5133 25 1 -0.3632 -0.8897 -0.5142 26 1 4.5546 2.4310 0.5306 27 1 5.6077 0.9960 0.5273 28 1 5.4409 0.8792 -1.9440 29 1 4.3878 2.3143 -1.9407 30 1 7.0989 2.0995 -3.2661 31 1 6.0464 3.5349 -3.2618 32 1 8.6680 4.3610 -5.7126 33 1 5.1294 -1.8111 -1.0293 34 1 4.6077 -2.5330 0.5118 35 1 5.6513 -1.0910 0.5127 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000292565459.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:20 Heat of formation + Delta-G solvation = -2.314597 kcal Electronic energy + Delta-G solvation = -19980.190408 eV Core-core repulsion = 16596.701443 eV Total energy + Delta-G solvation = -3383.488965 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.64529 -42.54445 -38.95068 -37.62871 -36.05676 -34.94795 -33.95623 -31.89552 -29.96884 -29.50336 -28.04934 -26.56280 -24.62490 -24.01800 -22.28654 -21.32337 -19.94032 -19.81825 -18.75165 -18.37590 -17.84153 -17.13885 -17.05128 -16.72654 -16.22310 -15.36976 -15.24236 -14.80006 -14.58211 -14.29635 -14.18662 -13.75799 -13.54576 -13.49937 -12.99246 -12.95092 -12.84631 -12.72147 -12.65359 -12.49592 -12.31701 -12.11708 -12.08474 -11.37281 -10.99904 -10.73291 -10.52039 -10.42830 -8.37606 -6.50868 -0.64958 0.00197 0.10454 0.77692 0.99785 1.40237 1.40764 1.55545 2.30758 2.78688 2.94078 2.97436 3.08517 3.36434 3.65972 3.69691 3.83297 4.04684 4.24976 4.27714 4.28839 4.40807 4.45300 4.46481 4.66084 4.70255 4.77228 4.88926 5.05607 5.18469 5.30576 5.48933 5.85561 5.97081 6.33623 6.44447 6.69081 7.21163 8.74762 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.037109 B = 0.003242 C = 0.003172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 754.352936 B = 8634.132835 C = 8825.178429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.125 3.875 3 N -0.290 5.290 4 N -0.344 5.344 5 C 0.141 3.859 6 C 0.047 3.953 7 O -0.396 6.396 8 C 0.210 3.790 9 C -0.549 4.549 10 H 0.068 0.932 11 C 0.007 3.993 12 N -0.931 5.931 13 Si 0.985 3.015 14 H -0.261 1.261 15 H -0.272 1.272 16 H -0.274 1.274 17 C 0.172 3.828 18 C -0.116 4.116 19 C -0.216 4.216 20 N 0.060 4.940 21 O -0.138 6.138 22 O -0.159 6.159 23 H 0.108 0.892 24 H 0.102 0.898 25 H 0.082 0.918 26 H 0.120 0.880 27 H 0.141 0.859 28 H 0.052 0.948 29 H 0.037 0.963 30 H -0.007 1.007 31 H -0.014 1.014 32 H 0.271 0.729 33 H 0.109 0.891 34 H 0.098 0.902 35 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.637 -10.299 11.424 18.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.044 4.044 3 N -0.111 5.111 4 N -0.124 5.124 5 C 0.021 3.979 6 C -0.031 4.031 7 O -0.315 6.315 8 C 0.135 3.865 9 C -0.587 4.587 10 H 0.087 0.913 11 C -0.192 4.192 12 N -0.570 5.570 13 Si 0.807 3.193 14 H -0.185 1.185 15 H -0.197 1.197 16 H -0.200 1.200 17 C 0.039 3.961 18 C -0.174 4.174 19 C -0.310 4.310 20 N 0.590 4.410 21 O -0.363 6.363 22 O -0.378 6.378 23 H 0.127 0.873 24 H 0.121 0.879 25 H 0.101 0.899 26 H 0.138 0.862 27 H 0.159 0.841 28 H 0.070 0.930 29 H 0.055 0.945 30 H 0.011 0.989 31 H 0.004 0.996 32 H 0.080 0.920 33 H 0.127 0.873 34 H 0.117 0.883 35 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.095 -8.056 11.376 17.211 hybrid contribution 0.214 -0.746 -0.761 1.087 sum -9.880 -8.802 10.616 16.964 Atomic orbital electron populations 1.20564 0.82902 1.05299 1.05589 1.22707 0.99117 0.86555 0.95994 1.77672 0.86344 1.21247 1.25866 1.48502 1.06116 1.03519 1.54253 1.21780 0.82987 0.96078 0.97064 1.22608 0.89200 0.94744 0.96528 1.87740 1.44316 1.68054 1.31401 1.19915 0.93425 0.93827 0.79295 1.21403 1.12326 1.30996 0.93978 0.91335 1.25974 1.01262 0.97781 0.94177 1.70075 1.42358 1.46034 0.98498 0.85108 0.77471 0.77754 0.78926 1.18452 1.19704 1.19957 1.21116 0.95789 0.85802 0.93411 1.21026 0.92055 0.98001 1.06290 1.20519 0.94603 0.82234 1.33618 1.42554 0.97240 1.01440 0.99798 1.94527 1.53381 1.67348 1.21086 1.94566 1.54587 1.67554 1.21116 0.87336 0.87945 0.89893 0.86151 0.84105 0.93016 0.94479 0.98921 0.99647 0.91966 0.87305 0.88333 0.86469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.44 10.44 71.24 0.74 -0.69 16 2 C 0.12 3.04 7.22 43.10 0.31 3.35 16 3 N -0.29 -7.90 12.58 -47.38 -0.60 -8.50 16 4 N -0.34 -8.56 3.61 -334.70 -1.21 -9.77 16 5 C 0.14 3.36 6.61 86.38 0.57 3.93 16 6 C 0.05 1.57 6.26 71.98 0.45 2.02 16 7 O -0.40 -17.29 10.33 -148.98 -1.54 -18.83 16 8 C 0.21 11.14 5.69 71.24 0.41 11.55 16 9 C -0.55 -31.04 9.43 25.60 0.24 -30.80 16 10 H 0.07 3.78 7.81 -2.91 -0.02 3.76 16 11 C 0.01 0.38 5.46 84.65 0.46 0.84 16 12 N -0.93 -54.26 13.29 21.45 0.28 -53.98 16 13 Si 0.98 42.48 29.54 68.60 2.03 44.51 16 14 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 15 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 16 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 17 C 0.17 3.94 6.93 41.41 0.29 4.22 16 18 C -0.12 -1.84 10.09 71.24 0.72 -1.12 16 19 C -0.22 -5.43 6.60 36.09 0.24 -5.19 16 20 N 0.06 1.55 4.41 -47.13 -0.21 1.34 16 21 O -0.14 -3.58 19.26 18.89 0.36 -3.22 16 22 O -0.16 -4.40 19.25 18.89 0.36 -4.04 16 23 H 0.11 1.44 8.14 -2.39 -0.02 1.42 16 24 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 25 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 26 H 0.12 2.80 8.14 -2.39 -0.02 2.78 16 27 H 0.14 2.52 7.05 -2.39 -0.02 2.50 16 28 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 29 H 0.04 1.32 8.14 -2.39 -0.02 1.30 16 30 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 31 H -0.01 -0.80 8.14 -2.39 -0.02 -0.82 16 32 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 33 H 0.11 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.12 1.37 7.07 -2.38 -0.02 1.35 16 Total: -1.00 -67.53 319.97 5.02 -62.51 By element: Atomic # 1 Polarization: 0.76 SS G_CDS: 1.10 Total: 1.85 kcal Atomic # 6 Polarization: -16.32 SS G_CDS: 4.43 Total: -11.89 kcal Atomic # 7 Polarization: -69.18 SS G_CDS: -1.73 Total: -70.91 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.81 Total: -26.08 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -67.53 5.02 -62.51 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000292565459.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.199 kcal (2) G-P(sol) polarization free energy of solvation -67.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds