Wall clock time and date at job start Mon Mar 30 2020 05:52:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17398 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 N 1.46500 * 109.47081 * 239.04888 * 3 2 1 5 5 C 1.37102 * 119.99986 * 263.94623 * 4 3 2 6 6 H 1.08003 * 120.00353 * 199.73741 * 5 4 3 7 7 C 1.38954 * 119.99998 * 19.74011 * 5 4 3 8 8 N 1.31407 * 119.99810 * 21.75417 * 7 5 4 9 9 Si 1.86795 * 119.99938 * 201.75803 * 7 5 4 10 10 H 1.48503 * 109.47181 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47341 * 119.99845 * 9 7 5 12 12 H 1.48505 * 109.47197 * 240.00026 * 9 7 5 13 13 C 1.34779 * 120.00193 * 83.94730 * 4 3 2 14 14 O 1.21287 * 119.99793 * 180.02562 * 13 4 3 15 15 C 1.50698 * 119.99517 * 359.97438 * 13 4 3 16 16 H 1.08994 * 115.55485 * 325.58816 * 15 13 4 17 17 C 1.52999 * 117.49494 * 111.25549 * 15 13 4 18 18 C 1.53001 * 117.49306 * 179.91211 * 15 13 4 19 19 H 1.09009 * 117.49418 * 145.02505 * 18 15 13 20 20 C 1.50694 * 117.50213 * 0.02562 * 18 15 13 21 21 C 1.38236 * 119.99920 * 299.72660 * 20 18 15 22 22 C 1.38238 * 119.99677 * 179.76356 * 21 20 18 23 23 C 1.38231 * 120.00197 * 0.48621 * 22 21 20 24 24 C 1.38238 * 119.99915 * 359.78937 * 23 22 21 25 25 C 1.38233 * 120.00232 * 359.95463 * 24 23 22 26 26 H 4.40635 * 5.51411 * 180.02562 * 4 1 2 27 27 H 1.08995 * 109.47536 * 359.05087 * 3 2 1 28 28 H 1.09006 * 109.47115 * 119.05235 * 3 2 1 29 29 H 0.97007 * 119.99845 * 179.97438 * 8 7 5 30 30 H 1.09002 * 117.50299 * 214.97787 * 17 15 13 31 31 H 1.09006 * 117.50057 * 359.97438 * 17 15 13 32 32 H 1.07991 * 120.00040 * 359.97438 * 21 20 18 33 33 H 1.07998 * 120.00118 * 180.25238 * 22 21 20 34 34 H 1.07999 * 120.00484 * 179.76702 * 23 22 21 35 35 H 1.08001 * 119.99866 * 179.97438 * 24 23 22 36 36 H 1.07991 * 120.00286 * 180.02562 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6459 0.0007 0.0000 4 7 3.1339 0.7112 1.1845 5 6 3.4799 2.0349 1.0958 6 1 4.1227 2.4764 1.8430 7 6 3.0035 2.8086 0.0444 8 7 1.9227 2.4395 -0.6057 9 14 3.8993 4.3730 -0.4447 10 1 5.0783 4.5648 0.4375 11 1 4.3488 4.2654 -1.8560 12 1 2.9826 5.5329 -0.3042 13 6 3.2428 0.0638 2.3616 14 8 3.6464 0.6522 3.3423 15 6 2.8620 -1.3910 2.4592 16 1 2.0282 -1.7020 1.8299 17 6 3.9870 -2.4016 2.6915 18 6 3.0101 -2.0700 3.8223 19 1 2.2737 -2.8280 4.0896 20 6 3.5249 -1.2326 4.9645 21 6 4.7764 -0.6507 4.8857 22 6 5.2466 0.1214 5.9315 23 6 4.4697 0.3033 7.0602 24 6 3.2206 -0.2833 7.1414 25 6 2.7481 -1.0511 6.0935 26 1 -1.0501 -0.0003 -0.0001 27 1 3.0098 -1.0266 0.0170 28 1 3.0091 0.4999 -0.8984 29 1 1.5899 2.9798 -1.3394 30 1 3.8931 -3.3777 2.2154 31 1 5.0027 -2.0143 2.7733 32 1 5.3852 -0.7965 4.0058 33 1 6.2226 0.5795 5.8682 34 1 4.8386 0.9035 7.8788 35 1 2.6137 -0.1415 8.0235 36 1 1.7721 -1.5090 6.1568 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302251467.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:46 Heat of formation + Delta-G solvation = 81.204773 kcal Electronic energy + Delta-G solvation = -20199.636759 eV Core-core repulsion = 17230.618729 eV Total energy + Delta-G solvation = -2969.018030 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.24366 -39.58118 -37.51753 -36.51386 -33.95374 -32.98173 -31.66306 -31.24836 -28.35265 -27.03809 -24.74728 -24.34018 -23.20212 -21.42183 -20.13809 -19.60931 -18.63171 -18.11068 -17.45796 -16.59543 -16.15567 -15.89347 -15.68199 -15.58392 -14.99223 -14.72545 -14.14750 -14.03157 -13.96326 -13.78845 -13.56365 -13.22775 -12.82275 -12.70798 -12.50069 -12.17636 -11.89909 -11.79069 -11.45829 -11.30161 -11.09593 -11.03917 -10.63112 -10.29715 -9.77562 -9.49260 -8.92764 -8.28955 -5.88819 0.61502 0.76169 1.33860 1.40694 1.53402 1.88671 2.15314 2.33504 2.40009 2.82245 3.09887 3.19356 3.31076 3.80044 3.89536 4.03117 4.05061 4.13568 4.25565 4.31979 4.36954 4.52064 4.70308 4.73633 4.82305 4.93336 4.95549 4.99883 5.19293 5.33206 5.34854 5.44045 5.49678 5.73908 5.79379 5.94337 6.12028 6.34757 6.50859 7.16583 7.21845 7.50102 8.11029 8.69576 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.019317 B = 0.006594 C = 0.005501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.179709 B = 4245.503799 C = 5088.905434 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.151 4.151 3 C 0.238 3.762 4 N -0.454 5.454 5 C -0.343 4.343 6 H 0.072 0.928 7 C 0.001 3.999 8 N -0.874 5.874 9 Si 0.978 3.022 10 H -0.275 1.275 11 H -0.265 1.265 12 H -0.283 1.283 13 C 0.467 3.533 14 O -0.592 6.592 15 C -0.180 4.180 16 H 0.125 0.875 17 C -0.132 4.132 18 C -0.090 4.090 19 H 0.143 0.857 20 C -0.053 4.053 21 C -0.059 4.059 22 C -0.151 4.151 23 C -0.134 4.134 24 C -0.142 4.142 25 C -0.131 4.131 26 H 0.231 0.769 27 H 0.097 0.903 28 H 0.085 0.915 29 H 0.269 0.731 30 H 0.141 0.859 31 H 0.089 0.911 32 H 0.099 0.901 33 H 0.118 0.882 34 H 0.135 0.865 35 H 0.139 0.861 36 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.356 -10.307 5.138 11.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.268 4.268 2 C -0.153 4.153 3 C 0.115 3.885 4 N -0.172 5.172 5 C -0.471 4.471 6 H 0.090 0.910 7 C -0.202 4.202 8 N -0.511 5.511 9 Si 0.802 3.198 10 H -0.200 1.200 11 H -0.190 1.190 12 H -0.209 1.209 13 C 0.257 3.743 14 O -0.477 6.477 15 C -0.202 4.202 16 H 0.143 0.857 17 C -0.169 4.169 18 C -0.108 4.108 19 H 0.160 0.840 20 C -0.053 4.053 21 C -0.077 4.077 22 C -0.169 4.169 23 C -0.152 4.152 24 C -0.160 4.160 25 C -0.149 4.149 26 H 0.247 0.753 27 H 0.115 0.885 28 H 0.103 0.897 29 H 0.079 0.921 30 H 0.159 0.841 31 H 0.108 0.892 32 H 0.117 0.883 33 H 0.136 0.864 34 H 0.153 0.847 35 H 0.157 0.843 36 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.475 -9.920 5.425 11.403 hybrid contribution -0.062 1.473 -0.644 1.609 sum 1.413 -8.447 4.781 9.809 Atomic orbital electron populations 1.25111 0.96355 1.04333 1.01015 1.23512 0.95072 0.97041 0.99651 1.18217 0.84416 0.95922 0.89919 1.43848 1.56615 1.09491 1.07290 1.19497 1.29122 0.86686 1.11810 0.91004 1.25915 0.95387 1.01620 0.97292 1.70189 1.18317 1.40432 1.22175 0.85121 0.78294 0.77879 0.78459 1.19993 1.19008 1.20947 1.20104 0.82658 0.89100 0.82411 1.90571 1.51480 1.69753 1.35919 1.22227 1.04140 0.91395 1.02393 0.85729 1.23225 0.94152 0.99429 1.00089 1.21241 1.02960 0.99952 0.86675 0.83958 1.19103 0.94026 0.97987 0.94212 1.20752 0.95638 0.95235 0.96047 1.21172 1.00771 1.00138 0.94810 1.21267 0.95218 1.00408 0.98297 1.21254 0.96517 0.98744 0.99489 1.21099 0.99680 1.00349 0.93724 0.75265 0.88492 0.89696 0.92081 0.84068 0.89219 0.88261 0.86353 0.84739 0.84299 0.85070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.99 19.25 74.32 1.43 -8.56 16 2 C -0.15 -6.66 10.61 31.12 0.33 -6.33 16 3 C 0.24 10.45 4.80 84.57 0.41 10.86 16 4 N -0.45 -23.07 2.60 -645.42 -1.68 -24.75 16 5 C -0.34 -19.40 9.28 84.04 0.78 -18.62 16 6 H 0.07 4.39 7.42 -2.91 -0.02 4.37 16 7 C 0.00 0.05 4.83 84.93 0.41 0.46 16 8 N -0.87 -46.30 9.59 21.66 0.21 -46.10 16 9 Si 0.98 42.76 29.60 68.60 2.03 44.79 16 10 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 12 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 13 C 0.47 22.40 7.21 87.66 0.63 23.03 16 14 O -0.59 -31.82 11.40 -3.05 -0.03 -31.86 16 15 C -0.18 -6.42 4.80 -11.54 -0.06 -6.47 16 16 H 0.12 4.16 6.71 -2.39 -0.02 4.15 16 17 C -0.13 -3.61 9.58 30.62 0.29 -3.32 16 18 C -0.09 -2.75 6.04 -11.52 -0.07 -2.82 16 19 H 0.14 3.39 8.14 -2.38 -0.02 3.37 16 20 C -0.05 -1.89 4.35 -19.87 -0.09 -1.98 16 21 C -0.06 -2.23 6.19 22.27 0.14 -2.09 16 22 C -0.15 -5.37 10.05 22.27 0.22 -5.14 16 23 C -0.13 -4.26 10.05 22.27 0.22 -4.03 16 24 C -0.14 -4.36 10.05 22.27 0.22 -4.13 16 25 C -0.13 -4.26 9.74 22.27 0.22 -4.04 16 26 H 0.23 7.19 7.80 -4.41 -0.03 7.16 16 27 H 0.10 3.46 7.00 -2.39 -0.02 3.45 16 28 H 0.08 3.99 6.60 -2.38 -0.02 3.97 16 29 H 0.27 13.54 8.31 -92.70 -0.77 12.77 16 30 H 0.14 2.70 8.14 -2.39 -0.02 2.68 16 31 H 0.09 2.67 6.18 -2.38 -0.01 2.66 16 32 H 0.10 3.87 5.80 -2.92 -0.02 3.85 16 33 H 0.12 3.82 8.06 -2.91 -0.02 3.79 16 34 H 0.13 3.45 8.06 -2.91 -0.02 3.42 16 35 H 0.14 3.35 8.06 -2.91 -0.02 3.32 16 36 H 0.13 3.59 8.06 -2.92 -0.02 3.57 16 Total: -1.00 -68.61 305.68 6.71 -61.91 By element: Atomic # 1 Polarization: 28.13 SS G_CDS: 1.08 Total: 29.21 kcal Atomic # 6 Polarization: -38.31 SS G_CDS: 5.10 Total: -33.21 kcal Atomic # 7 Polarization: -69.38 SS G_CDS: -1.47 Total: -70.85 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -0.03 Total: -31.86 kcal Atomic # 14 Polarization: 42.76 SS G_CDS: 2.03 Total: 44.79 kcal Total: -68.61 6.71 -61.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302251467.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.112 kcal (2) G-P(sol) polarization free energy of solvation -68.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.498 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.907 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.205 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds