Wall clock time and date at job start Mon Mar 30 2020 05:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46981 * 125.37015 * 3 2 1 5 5 C 1.37103 * 120.00094 * 95.83285 * 4 3 2 6 6 H 1.07991 * 120.00181 * 163.71960 * 5 4 3 7 7 C 1.38957 * 119.99767 * 343.71407 * 5 4 3 8 8 N 1.31412 * 119.99774 * 336.63187 * 7 5 4 9 9 Si 1.86792 * 119.99895 * 156.63509 * 7 5 4 10 10 H 1.48505 * 109.47339 * 85.46082 * 9 7 5 11 11 H 1.48497 * 109.47373 * 325.46195 * 9 7 5 12 12 H 1.48500 * 109.47278 * 205.45954 * 9 7 5 13 13 C 1.34773 * 119.99982 * 275.83040 * 4 3 2 14 14 O 1.21297 * 119.99736 * 179.97438 * 13 4 3 15 15 C 1.50701 * 120.00203 * 0.02562 * 13 4 3 16 16 H 1.08990 * 115.54668 * 34.27394 * 15 13 4 17 17 C 1.53000 * 117.49605 * 248.60850 * 15 13 4 18 18 C 1.52995 * 117.49792 * 179.97438 * 15 13 4 19 19 H 1.08996 * 117.50361 * 359.97438 * 18 15 13 20 20 C 1.50700 * 117.49698 * 214.97617 * 18 15 13 21 21 C 1.38237 * 119.99764 * 299.72937 * 20 18 15 22 22 C 1.38239 * 119.99513 * 179.78843 * 21 20 18 23 23 C 1.38234 * 120.00288 * 0.44494 * 22 21 20 24 24 C 1.38235 * 120.00034 * 359.80418 * 23 22 21 25 25 C 1.38232 * 120.00152 * 120.00190 * 20 18 15 26 26 H 4.40637 * 5.51438 * 179.97438 * 4 1 2 27 27 H 1.08991 * 109.47517 * 5.37147 * 3 2 1 28 28 H 1.09003 * 109.47166 * 245.36828 * 3 2 1 29 29 H 0.96996 * 119.99625 * 179.97438 * 8 7 5 30 30 H 1.09003 * 117.49955 * 359.97438 * 17 15 13 31 31 H 1.09001 * 117.49761 * 144.99770 * 17 15 13 32 32 H 1.08000 * 120.00215 * 359.97438 * 21 20 18 33 33 H 1.07998 * 119.99918 * 180.27380 * 22 21 20 34 34 H 1.07995 * 120.00209 * 179.84014 * 23 22 21 35 35 H 1.08000 * 120.00582 * 180.02562 * 24 23 22 36 36 H 1.08000 * 119.99821 * 359.97438 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8004 -1.1263 5 6 3.4756 2.1146 -0.9368 6 1 4.0722 2.6293 -1.6753 7 6 3.0541 2.7843 0.2055 8 7 1.9953 2.3639 0.8605 9 14 3.9926 4.2820 0.8098 10 1 3.5013 5.4923 0.1033 11 1 5.4409 4.1026 0.5355 12 1 3.7816 4.4420 2.2710 13 6 3.2470 0.2443 -2.3487 14 8 3.6506 0.9066 -3.2813 15 6 2.8710 -1.2001 -2.5572 16 1 2.0385 -1.5609 -1.9533 17 6 3.9992 -2.1862 -2.8663 18 6 3.0211 -1.7726 -3.9680 19 1 3.3915 -1.1045 -4.7456 20 6 2.0065 -2.7926 -4.4166 21 6 1.8685 -3.9810 -3.7241 22 6 0.9347 -4.9147 -4.1330 23 6 0.1455 -4.6641 -5.2399 24 6 0.2872 -3.4780 -5.9355 25 6 1.2179 -2.5424 -5.5240 26 1 -1.0501 -0.0003 0.0001 27 1 3.0098 -1.0222 -0.0962 28 1 3.0091 0.4291 0.9342 29 1 1.7013 2.8311 1.6580 30 1 5.0134 -1.7902 -2.9192 31 1 3.9089 -3.1959 -2.4657 32 1 2.4880 -4.1786 -2.8617 33 1 0.8238 -5.8413 -3.5893 34 1 -0.5821 -5.3947 -5.5609 35 1 -0.3296 -3.2819 -6.8001 36 1 1.3286 -1.6156 -6.0674 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000302251482.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:50 Heat of formation + Delta-G solvation = 84.452568 kcal Electronic energy + Delta-G solvation = -19585.970560 eV Core-core repulsion = 16617.093365 eV Total energy + Delta-G solvation = -2968.877195 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.72752 -38.53551 -36.14025 -34.87731 -32.10659 -31.19782 -30.86323 -30.36282 -26.56409 -25.33111 -23.67335 -22.89575 -22.16982 -20.21299 -18.63372 -17.86422 -17.24021 -16.57980 -16.11291 -15.10965 -14.91962 -14.59671 -14.29594 -14.06010 -13.75634 -13.32392 -13.12637 -12.76586 -12.48331 -12.23958 -11.77977 -11.66045 -11.54059 -11.14757 -10.98370 -10.82135 -10.56174 -10.45886 -10.22740 -9.99257 -9.35595 -9.25652 -8.90141 -8.84430 -8.53215 -8.30716 -7.87409 -6.35323 -3.84585 1.41160 1.48349 3.13415 3.24891 3.30350 3.48112 3.81263 3.87313 4.04967 4.17710 4.46694 4.65966 4.94821 4.98761 5.03318 5.12186 5.20715 5.28243 5.39618 5.49729 5.52686 5.61289 5.71964 5.91579 5.99857 6.10025 6.13987 6.31432 6.38051 6.42980 6.56935 6.60120 6.74299 6.82934 7.02903 7.08693 7.55733 8.04782 8.42252 8.81142 9.12869 9.35965 9.92278 10.65910 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.029442 B = 0.004741 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.796392 B = 5904.638819 C = 6301.356949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C -0.116 4.116 3 C 0.232 3.768 4 N -0.434 5.434 5 C -0.317 4.317 6 H 0.105 0.895 7 C 0.032 3.968 8 N -0.859 5.859 9 Si 0.919 3.081 10 H -0.277 1.277 11 H -0.269 1.269 12 H -0.283 1.283 13 C 0.477 3.523 14 O -0.584 6.584 15 C -0.152 4.152 16 H 0.114 0.886 17 C -0.155 4.155 18 C -0.096 4.096 19 H 0.123 0.877 20 C -0.039 4.039 21 C -0.122 4.122 22 C -0.119 4.119 23 C -0.132 4.132 24 C -0.119 4.119 25 C -0.112 4.112 26 H 0.199 0.801 27 H 0.064 0.936 28 H 0.109 0.891 29 H 0.268 0.732 30 H 0.101 0.899 31 H 0.099 0.901 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.117 0.883 35 H 0.120 0.880 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.853 -13.127 -4.513 14.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.278 4.278 2 C -0.117 4.117 3 C 0.109 3.891 4 N -0.151 5.151 5 C -0.444 4.444 6 H 0.122 0.878 7 C -0.172 4.172 8 N -0.496 5.496 9 Si 0.745 3.255 10 H -0.203 1.203 11 H -0.194 1.194 12 H -0.208 1.208 13 C 0.265 3.735 14 O -0.469 6.469 15 C -0.174 4.174 16 H 0.132 0.868 17 C -0.192 4.192 18 C -0.115 4.115 19 H 0.141 0.859 20 C -0.039 4.039 21 C -0.140 4.140 22 C -0.137 4.137 23 C -0.150 4.150 24 C -0.137 4.137 25 C -0.130 4.130 26 H 0.216 0.784 27 H 0.082 0.918 28 H 0.127 0.873 29 H 0.079 0.921 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.141 0.859 33 H 0.137 0.863 34 H 0.135 0.865 35 H 0.138 0.862 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.727 -12.701 -4.766 13.675 hybrid contribution -0.206 0.872 0.581 1.068 sum -1.933 -11.829 -4.185 12.695 Atomic orbital electron populations 1.24281 0.95388 1.05274 1.02826 1.23209 0.94399 0.96030 0.98071 1.18274 0.84183 0.93502 0.93133 1.43611 1.55549 1.10500 1.05461 1.19644 1.31269 0.86816 1.06692 0.87777 1.25273 0.95187 0.99127 0.97644 1.70126 1.19417 1.41270 1.18833 0.86070 0.80366 0.81329 0.77704 1.20325 1.19420 1.20845 1.19094 0.84264 0.87224 0.82897 1.90507 1.51612 1.63936 1.40813 1.22390 1.01729 0.94606 0.98642 0.86799 1.23062 0.95507 0.98745 1.01900 1.21035 0.98556 0.99184 0.92721 0.85871 1.19262 0.95801 0.93919 0.94944 1.21098 0.98930 0.93769 1.00175 1.21085 0.96291 0.99246 0.97098 1.21085 1.00009 0.97527 0.96405 1.21110 0.98482 0.94181 0.99951 1.21045 0.95792 0.99378 0.96786 0.78402 0.91798 0.87311 0.92111 0.88034 0.88325 0.85868 0.86289 0.86464 0.86240 0.85873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.47 19.25 29.55 0.57 -4.90 16 2 C -0.12 -2.62 10.78 -37.12 -0.40 -3.02 16 3 C 0.23 5.17 4.80 -6.83 -0.03 5.14 16 4 N -0.43 -11.04 2.60 -117.93 -0.31 -11.35 16 5 C -0.32 -8.75 9.33 -14.93 -0.14 -8.89 16 6 H 0.10 3.02 7.38 -52.49 -0.39 2.64 16 7 C 0.03 0.84 4.83 -17.46 -0.08 0.76 16 8 N -0.86 -22.58 9.56 55.50 0.53 -22.05 16 9 Si 0.92 20.37 29.61 -169.99 -5.03 15.34 16 10 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 11 H -0.27 -5.93 7.11 56.52 0.40 -5.52 16 12 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 13 C 0.48 11.71 7.35 -10.99 -0.08 11.63 16 14 O -0.58 -16.24 15.90 5.54 0.09 -16.15 16 15 C -0.15 -2.91 4.44 -91.77 -0.41 -3.32 16 16 H 0.11 2.14 6.72 -51.93 -0.35 1.79 16 17 C -0.15 -2.38 9.56 -26.72 -0.26 -2.64 16 18 C -0.10 -1.63 5.56 -91.76 -0.51 -2.14 16 19 H 0.12 2.25 7.67 -51.93 -0.40 1.86 16 20 C -0.04 -0.59 5.61 -104.62 -0.59 -1.17 16 21 C -0.12 -1.60 9.30 -39.58 -0.37 -1.97 16 22 C -0.12 -1.39 10.05 -39.58 -0.40 -1.78 16 23 C -0.13 -1.49 10.05 -39.58 -0.40 -1.89 16 24 C -0.12 -1.44 10.05 -39.58 -0.40 -1.84 16 25 C -0.11 -1.58 9.74 -39.58 -0.39 -1.96 16 26 H 0.20 3.43 7.80 -54.09 -0.42 3.01 16 27 H 0.06 1.19 6.98 -51.93 -0.36 0.83 16 28 H 0.11 2.53 6.41 -51.93 -0.33 2.20 16 29 H 0.27 6.74 8.31 -40.82 -0.34 6.40 16 30 H 0.10 1.59 8.14 -51.93 -0.42 1.17 16 31 H 0.10 1.23 6.17 -51.93 -0.32 0.91 16 32 H 0.12 1.45 6.02 -52.49 -0.32 1.13 16 33 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 34 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 35 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 36 H 0.12 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 313.52 15.07 4.72 4.72 Total: -1.00 -31.37 313.52 -8.01 -39.38 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -4.14 Total: 8.10 kcal Atomic # 6 Polarization: -14.12 SS G_CDS: -3.87 Total: -17.99 kcal Atomic # 7 Polarization: -33.62 SS G_CDS: 0.22 Total: -33.40 kcal Atomic # 8 Polarization: -16.24 SS G_CDS: 0.09 Total: -16.15 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.03 Total: 15.34 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -31.37 -8.01 -39.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302251482.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.836 kcal (2) G-P(sol) polarization free energy of solvation -31.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.384 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds