Wall clock time and date at job start Mon Mar 30 2020 05:52:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46503 * 109.46981 * 125.37015 * 3 2 1 5 5 C 1.37103 * 120.00094 * 95.83285 * 4 3 2 6 6 H 1.07991 * 120.00181 * 163.71960 * 5 4 3 7 7 C 1.38957 * 119.99767 * 343.71407 * 5 4 3 8 8 N 1.31412 * 119.99774 * 336.63187 * 7 5 4 9 9 Si 1.86792 * 119.99895 * 156.63509 * 7 5 4 10 10 H 1.48505 * 109.47339 * 85.46082 * 9 7 5 11 11 H 1.48497 * 109.47373 * 325.46195 * 9 7 5 12 12 H 1.48500 * 109.47278 * 205.45954 * 9 7 5 13 13 C 1.34773 * 119.99982 * 275.83040 * 4 3 2 14 14 O 1.21297 * 119.99736 * 179.97438 * 13 4 3 15 15 C 1.50701 * 120.00203 * 0.02562 * 13 4 3 16 16 H 1.08990 * 115.54668 * 34.27394 * 15 13 4 17 17 C 1.53000 * 117.49605 * 248.60850 * 15 13 4 18 18 C 1.52995 * 117.49792 * 179.97438 * 15 13 4 19 19 H 1.08996 * 117.50361 * 359.97438 * 18 15 13 20 20 C 1.50700 * 117.49698 * 214.97617 * 18 15 13 21 21 C 1.38237 * 119.99764 * 299.72937 * 20 18 15 22 22 C 1.38239 * 119.99513 * 179.78843 * 21 20 18 23 23 C 1.38234 * 120.00288 * 0.44494 * 22 21 20 24 24 C 1.38235 * 120.00034 * 359.80418 * 23 22 21 25 25 C 1.38232 * 120.00152 * 120.00190 * 20 18 15 26 26 H 4.40637 * 5.51438 * 179.97438 * 4 1 2 27 27 H 1.08991 * 109.47517 * 5.37147 * 3 2 1 28 28 H 1.09003 * 109.47166 * 245.36828 * 3 2 1 29 29 H 0.96996 * 119.99625 * 179.97438 * 8 7 5 30 30 H 1.09003 * 117.49955 * 359.97438 * 17 15 13 31 31 H 1.09001 * 117.49761 * 144.99770 * 17 15 13 32 32 H 1.08000 * 120.00215 * 359.97438 * 21 20 18 33 33 H 1.07998 * 119.99918 * 180.27380 * 22 21 20 34 34 H 1.07995 * 120.00209 * 179.84014 * 23 22 21 35 35 H 1.08000 * 120.00582 * 180.02562 * 24 23 22 36 36 H 1.08000 * 119.99821 * 359.97438 * 25 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1339 0.8004 -1.1263 5 6 3.4756 2.1146 -0.9368 6 1 4.0722 2.6293 -1.6753 7 6 3.0541 2.7843 0.2055 8 7 1.9953 2.3639 0.8605 9 14 3.9926 4.2820 0.8098 10 1 3.5013 5.4923 0.1033 11 1 5.4409 4.1026 0.5355 12 1 3.7816 4.4420 2.2710 13 6 3.2470 0.2443 -2.3487 14 8 3.6506 0.9066 -3.2813 15 6 2.8710 -1.2001 -2.5572 16 1 2.0385 -1.5609 -1.9533 17 6 3.9992 -2.1862 -2.8663 18 6 3.0211 -1.7726 -3.9680 19 1 3.3915 -1.1045 -4.7456 20 6 2.0065 -2.7926 -4.4166 21 6 1.8685 -3.9810 -3.7241 22 6 0.9347 -4.9147 -4.1330 23 6 0.1455 -4.6641 -5.2399 24 6 0.2872 -3.4780 -5.9355 25 6 1.2179 -2.5424 -5.5240 26 1 -1.0501 -0.0003 0.0001 27 1 3.0098 -1.0222 -0.0962 28 1 3.0091 0.4291 0.9342 29 1 1.7013 2.8311 1.6580 30 1 5.0134 -1.7902 -2.9192 31 1 3.9089 -3.1959 -2.4657 32 1 2.4880 -4.1786 -2.8617 33 1 0.8238 -5.8413 -3.5893 34 1 -0.5821 -5.3947 -5.5609 35 1 -0.3296 -3.2819 -6.8001 36 1 1.3286 -1.6156 -6.0674 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000302251482.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:49 Heat of formation + Delta-G solvation = 68.156270 kcal Electronic energy + Delta-G solvation = -19586.677220 eV Core-core repulsion = 16617.093365 eV Total energy + Delta-G solvation = -2969.583855 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 269.116 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.12951 -39.96337 -37.64007 -36.69855 -34.01495 -33.04064 -31.81178 -31.41020 -28.41033 -27.14504 -24.84811 -24.43353 -23.21755 -21.39017 -20.32177 -19.70459 -18.68651 -18.20817 -17.57380 -16.81271 -16.20656 -15.92414 -15.82376 -15.68865 -15.05610 -14.83959 -14.24192 -14.14860 -14.05254 -13.76668 -13.55603 -13.28602 -12.81508 -12.79108 -12.53738 -12.17818 -12.14668 -11.88442 -11.54221 -11.37132 -11.17591 -11.10543 -10.68500 -10.37157 -9.86039 -9.78271 -9.44659 -8.35317 -5.93311 0.41982 0.53962 1.34142 1.41772 1.53938 1.77759 2.08776 2.30825 2.36559 2.70911 2.95773 3.12327 3.22048 3.69825 3.84548 3.89970 3.95214 4.03009 4.18593 4.28391 4.33127 4.36406 4.63252 4.66419 4.72896 4.79516 4.94062 5.01159 5.09090 5.20128 5.22063 5.39465 5.45650 5.62673 5.65515 5.77790 6.03623 6.15942 6.42945 7.10977 7.12640 7.40326 7.98074 8.63872 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.029442 B = 0.004741 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.796392 B = 5904.638819 C = 6301.356949 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.155 4.155 3 C 0.236 3.764 4 N -0.446 5.446 5 C -0.358 4.358 6 H 0.074 0.926 7 C 0.005 3.995 8 N -0.869 5.869 9 Si 0.983 3.017 10 H -0.281 1.281 11 H -0.269 1.269 12 H -0.266 1.266 13 C 0.464 3.536 14 O -0.633 6.633 15 C -0.168 4.168 16 H 0.121 0.879 17 C -0.125 4.125 18 C -0.091 4.091 19 H 0.096 0.904 20 C -0.062 4.062 21 C -0.127 4.127 22 C -0.119 4.119 23 C -0.129 4.129 24 C -0.123 4.123 25 C -0.135 4.135 26 H 0.232 0.768 27 H 0.098 0.902 28 H 0.094 0.906 29 H 0.273 0.727 30 H 0.095 0.905 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.150 0.850 34 H 0.148 0.852 35 H 0.141 0.859 36 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.014 -15.490 -3.685 16.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.157 4.157 3 C 0.113 3.887 4 N -0.162 5.162 5 C -0.485 4.485 6 H 0.092 0.908 7 C -0.199 4.199 8 N -0.505 5.505 9 Si 0.807 3.193 10 H -0.207 1.207 11 H -0.194 1.194 12 H -0.191 1.191 13 C 0.255 3.745 14 O -0.521 6.521 15 C -0.189 4.189 16 H 0.139 0.861 17 C -0.162 4.162 18 C -0.110 4.110 19 H 0.114 0.886 20 C -0.062 4.062 21 C -0.145 4.145 22 C -0.137 4.137 23 C -0.146 4.146 24 C -0.141 4.141 25 C -0.153 4.153 26 H 0.249 0.751 27 H 0.116 0.884 28 H 0.112 0.888 29 H 0.083 0.917 30 H 0.114 0.886 31 H 0.157 0.843 32 H 0.156 0.844 33 H 0.167 0.833 34 H 0.166 0.834 35 H 0.158 0.842 36 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -2.904 -15.089 -3.912 15.856 hybrid contribution 0.064 1.578 0.270 1.602 sum -2.840 -13.511 -3.643 14.278 Atomic orbital electron populations 1.25145 0.96374 1.03720 1.01148 1.23494 0.95056 0.97498 0.99602 1.18323 0.84480 0.94580 0.91298 1.43820 1.55518 1.10200 1.06684 1.19559 1.32955 0.88498 1.07497 0.90796 1.25969 0.95470 1.01571 0.96852 1.70205 1.19560 1.42069 1.18716 0.85124 0.78902 0.77593 0.77708 1.20652 1.19387 1.19080 1.20021 0.83021 0.89376 0.82081 1.90457 1.53649 1.65770 1.42218 1.22137 1.03950 0.91743 1.01077 0.86112 1.23219 0.94054 0.99272 0.99663 1.20954 0.99678 0.99163 0.91217 0.88575 1.19199 0.96288 0.94467 0.96228 1.21302 0.99614 0.93192 1.00390 1.21480 0.95246 0.99848 0.97112 1.21515 0.99950 0.97453 0.95721 1.21395 0.97950 0.94086 1.00690 1.21171 0.96986 0.99962 0.97210 0.75111 0.88401 0.88841 0.91671 0.88607 0.84303 0.84390 0.83271 0.83379 0.84157 0.86903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.99 19.25 74.32 1.43 -8.56 16 2 C -0.16 -6.96 10.78 31.12 0.34 -6.63 16 3 C 0.24 10.57 4.80 84.57 0.41 10.97 16 4 N -0.45 -23.48 2.60 -645.41 -1.68 -25.16 16 5 C -0.36 -20.63 9.33 84.04 0.78 -19.84 16 6 H 0.07 4.59 7.38 -2.92 -0.02 4.57 16 7 C 0.01 0.28 4.83 84.93 0.41 0.69 16 8 N -0.87 -45.76 9.56 21.67 0.21 -45.55 16 9 Si 0.98 42.29 29.61 68.60 2.03 44.32 16 10 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 12 H -0.27 -10.68 7.11 99.48 0.71 -9.97 16 13 C 0.46 23.83 7.35 87.66 0.64 24.47 16 14 O -0.63 -37.49 15.90 -3.08 -0.05 -37.54 16 15 C -0.17 -6.47 4.44 -11.54 -0.05 -6.52 16 16 H 0.12 4.47 6.72 -2.39 -0.02 4.45 16 17 C -0.12 -3.72 9.56 30.60 0.29 -3.43 16 18 C -0.09 -3.13 5.56 -11.53 -0.06 -3.20 16 19 H 0.10 3.78 7.67 -2.39 -0.02 3.76 16 20 C -0.06 -1.80 5.61 -19.87 -0.11 -1.92 16 21 C -0.13 -3.01 9.30 22.27 0.21 -2.80 16 22 C -0.12 -2.31 10.05 22.27 0.22 -2.09 16 23 C -0.13 -2.44 10.05 22.27 0.22 -2.21 16 24 C -0.12 -2.73 10.05 22.27 0.22 -2.51 16 25 C -0.14 -3.78 9.74 22.27 0.22 -3.57 16 26 H 0.23 7.37 7.80 -4.41 -0.03 7.33 16 27 H 0.10 3.59 6.98 -2.39 -0.02 3.58 16 28 H 0.09 4.42 6.41 -2.39 -0.02 4.40 16 29 H 0.27 13.55 8.31 -92.71 -0.77 12.78 16 30 H 0.10 2.98 8.14 -2.39 -0.02 2.96 16 31 H 0.14 3.00 6.17 -2.39 -0.01 2.98 16 32 H 0.14 2.73 6.02 -2.91 -0.02 2.71 16 33 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 34 H 0.15 1.88 8.06 -2.91 -0.02 1.85 16 35 H 0.14 2.41 8.06 -2.91 -0.02 2.38 16 36 H 0.11 3.23 8.06 -2.91 -0.02 3.21 16 Total: -1.00 -71.15 313.52 6.76 -64.38 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: 1.08 Total: 26.68 kcal Atomic # 6 Polarization: -32.30 SS G_CDS: 5.17 Total: -27.13 kcal Atomic # 7 Polarization: -69.24 SS G_CDS: -1.47 Total: -70.71 kcal Atomic # 8 Polarization: -37.49 SS G_CDS: -0.05 Total: -37.54 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Total: -71.15 6.76 -64.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000302251482.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.537 kcal (2) G-P(sol) polarization free energy of solvation -71.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.765 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.380 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds