Wall clock time and date at job start Mon Mar 30 2020 04:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46493 * 109.46974 * 254.46092 * 3 2 1 5 5 C 1.37164 * 120.00420 * 263.76816 * 4 3 2 6 6 H 1.07996 * 120.00215 * 201.57106 * 5 4 3 7 7 C 1.38889 * 119.99413 * 21.57350 * 5 4 3 8 8 N 1.31464 * 120.00313 * 5.52233 * 7 5 4 9 9 Si 1.86806 * 119.99820 * 185.51794 * 7 5 4 10 10 H 1.48499 * 109.46877 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.46918 * 120.00300 * 9 7 5 12 12 H 1.48503 * 109.47007 * 240.00280 * 9 7 5 13 13 C 1.34780 * 120.00032 * 83.77453 * 4 3 2 14 14 O 1.21589 * 119.99854 * 180.02562 * 13 4 3 15 15 N 1.34774 * 120.00182 * 359.97438 * 13 4 3 16 16 C 1.39500 * 120.00629 * 184.79393 * 15 13 4 17 17 C 1.39118 * 119.91990 * 144.51789 * 16 15 13 18 18 C 1.37691 * 120.07385 * 180.02562 * 17 16 15 19 19 C 1.39783 * 119.92395 * 0.02562 * 18 17 16 20 20 C 1.43196 * 120.07904 * 179.97438 * 19 18 17 21 21 N 9.64510 * 100.65602 * 312.64325 * 2 1 3 22 22 C 1.39788 * 119.83845 * 0.25771 * 19 18 17 23 23 C 1.37687 * 119.91849 * 359.48680 * 22 19 18 24 24 H 4.40636 * 5.51389 * 179.97438 * 4 1 2 25 25 H 1.08999 * 109.46471 * 134.46600 * 3 2 1 26 26 H 1.09002 * 109.47009 * 14.46243 * 3 2 1 27 27 H 0.97000 * 120.00420 * 180.02562 * 8 7 5 28 28 H 0.97008 * 119.99713 * 4.80022 * 15 13 4 29 29 H 1.07987 * 119.96290 * 0.02562 * 17 16 15 30 30 H 1.07998 * 120.03493 * 179.97438 * 18 17 16 31 31 H 1.07994 * 120.03604 * 179.75165 * 22 19 18 32 32 H 1.08005 * 119.95647 * 180.23507 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.3709 1.3307 5 6 3.4837 1.6704 1.5960 6 1 4.1503 1.8937 2.4158 7 6 2.9804 2.6991 0.8102 8 7 2.0857 2.4402 -0.1175 9 14 3.5747 4.4507 1.0717 10 1 4.5747 4.4754 2.1692 11 1 4.1984 4.9536 -0.1786 12 1 2.4227 5.3155 1.4329 13 6 3.2398 -0.5655 2.2943 14 8 3.6445 -0.2581 3.3989 15 7 2.8960 -1.8423 2.0339 16 6 2.9097 -2.7910 3.0566 17 6 1.9542 -3.8018 3.0783 18 6 1.9645 -4.7395 4.0865 19 6 2.9362 -4.6746 5.0892 20 6 2.9496 -5.6478 6.1396 21 7 2.9575 -6.4212 6.9724 22 6 3.8911 -3.6540 5.0674 23 6 3.8779 -2.7228 4.0532 24 1 -1.0500 0.0002 -0.0002 25 1 3.0089 0.7207 -0.7334 26 1 3.0098 -0.9943 -0.2567 27 1 1.7344 3.1586 -0.6666 28 1 2.6390 -2.1017 1.1352 29 1 1.2035 -3.8511 2.3035 30 1 1.2221 -5.5237 4.1029 31 1 4.6408 -3.5985 5.8427 32 1 4.6178 -1.9362 4.0336 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000305935133.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:30 Heat of formation + Delta-G solvation = 108.765113 kcal Electronic energy + Delta-G solvation = -19076.484328 eV Core-core repulsion = 16005.121061 eV Total energy + Delta-G solvation = -3071.363267 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.090 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.18730 -38.61405 -36.46295 -35.48767 -34.15168 -32.09082 -31.43838 -30.93788 -29.53098 -26.62552 -24.99108 -23.10380 -22.73562 -20.03076 -18.77321 -18.17675 -17.98625 -16.77048 -16.48959 -15.34108 -14.84683 -14.55599 -14.26940 -14.04706 -13.89363 -13.42751 -13.40260 -13.14930 -13.00341 -12.63712 -12.39617 -12.08685 -11.99688 -11.49568 -11.13595 -11.08561 -10.61600 -10.40974 -9.92971 -9.59351 -9.44075 -9.14018 -8.93181 -8.77683 -8.05991 -7.77300 -6.37459 -4.00949 0.92901 1.51103 2.74037 3.01317 3.12738 3.17494 3.23652 3.38154 3.78750 3.87732 3.96207 4.04797 4.16518 4.21213 4.94162 4.98011 5.01982 5.13323 5.37698 5.41759 5.62698 5.72382 6.05798 6.11080 6.19801 6.45840 6.52894 6.73608 6.73948 6.94616 7.24187 7.31252 7.46986 7.57338 8.16000 8.42096 8.68990 8.99469 9.24555 9.76816 10.62515 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.030853 B = 0.004540 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.298146 B = 6166.023999 C = 6848.636160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C -0.115 4.115 3 C 0.230 3.770 4 N -0.453 5.453 5 C -0.295 4.295 6 H 0.105 0.895 7 C 0.027 3.973 8 N -0.880 5.880 9 Si 0.932 3.068 10 H -0.268 1.268 11 H -0.281 1.281 12 H -0.282 1.282 13 C 0.653 3.347 14 O -0.596 6.596 15 N -0.692 5.692 16 C 0.226 3.774 17 C -0.166 4.166 18 C -0.046 4.046 19 C -0.079 4.079 20 C 0.269 3.731 21 N -0.445 5.445 22 C -0.047 4.047 23 C -0.130 4.130 24 H 0.199 0.801 25 H 0.130 0.870 26 H 0.050 0.950 27 H 0.268 0.732 28 H 0.403 0.597 29 H 0.132 0.868 30 H 0.130 0.870 31 H 0.130 0.870 32 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.024 -8.751 -1.489 8.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 C -0.117 4.117 3 C 0.107 3.893 4 N -0.175 5.175 5 C -0.423 4.423 6 H 0.123 0.877 7 C -0.175 4.175 8 N -0.520 5.520 9 Si 0.759 3.241 10 H -0.192 1.192 11 H -0.207 1.207 12 H -0.208 1.208 13 C 0.357 3.643 14 O -0.477 6.477 15 N -0.339 5.339 16 C 0.125 3.875 17 C -0.188 4.188 18 C -0.067 4.067 19 C -0.084 4.084 20 C -0.045 4.045 21 N -0.121 5.121 22 C -0.069 4.069 23 C -0.151 4.151 24 H 0.216 0.784 25 H 0.147 0.853 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.240 0.760 29 H 0.150 0.850 30 H 0.147 0.853 31 H 0.148 0.852 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 0.220 -9.413 0.350 9.422 hybrid contribution -0.482 1.249 -0.838 1.579 sum -0.261 -8.164 -0.488 8.183 Atomic orbital electron populations 1.24319 0.95433 1.06303 1.01967 1.23258 0.94405 0.95471 0.98560 1.18390 0.84183 0.98455 0.88243 1.42953 1.59638 1.07541 1.07337 1.19667 1.26244 0.79560 1.16816 0.87717 1.25346 0.95397 1.00112 0.96679 1.69945 1.27623 1.32865 1.21529 0.85756 0.78543 0.81522 0.78271 1.19247 1.20698 1.20813 1.16074 0.83429 0.79878 0.84940 1.90759 1.55074 1.79890 1.21967 1.42979 1.71565 1.08077 1.11265 1.17856 0.92128 0.88043 0.89432 1.20794 0.99226 0.97506 1.01251 1.20787 0.96184 0.97709 0.92024 1.15925 1.01982 0.96047 0.94451 1.25831 0.93056 0.92805 0.92841 1.81235 1.08931 1.10965 1.10933 1.21024 0.96427 0.91840 0.97566 1.21406 0.99348 0.99611 0.94752 0.78394 0.85250 0.93221 0.92123 0.76042 0.84991 0.85256 0.85233 0.82873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.26 -5.01 19.25 29.55 0.57 -4.44 16 2 C -0.12 -2.36 11.51 -37.12 -0.43 -2.79 16 3 C 0.23 4.62 4.81 -6.83 -0.03 4.59 16 4 N -0.45 -10.48 2.61 -123.33 -0.32 -10.80 16 5 C -0.30 -7.54 9.33 -14.92 -0.14 -7.68 16 6 H 0.11 2.80 7.37 -52.49 -0.39 2.41 16 7 C 0.03 0.66 5.21 -17.47 -0.09 0.57 16 8 N -0.88 -21.64 8.86 55.49 0.49 -21.15 16 9 Si 0.93 19.69 29.56 -169.99 -5.02 14.67 16 10 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 11 H -0.28 -5.80 7.11 56.52 0.40 -5.40 16 12 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 13 C 0.65 14.40 8.00 -86.92 -0.70 13.71 16 14 O -0.60 -14.83 13.45 5.29 0.07 -14.76 16 15 N -0.69 -11.78 5.19 -14.21 -0.07 -11.85 16 16 C 0.23 3.45 6.29 -83.72 -0.53 2.92 16 17 C -0.17 -2.03 9.95 -39.45 -0.39 -2.42 16 18 C -0.05 -0.51 9.75 -39.20 -0.38 -0.89 16 19 C -0.08 -0.97 5.74 -106.82 -0.61 -1.58 16 20 C 0.27 3.55 15.33 -22.45 -0.34 3.20 16 21 N -0.44 -6.69 18.54 41.86 0.78 -5.91 16 22 C -0.05 -0.61 9.75 -39.20 -0.38 -0.99 16 23 C -0.13 -2.00 8.66 -39.46 -0.34 -2.34 16 24 H 0.20 3.09 7.80 -54.09 -0.42 2.67 16 25 H 0.13 2.81 6.19 -51.93 -0.32 2.49 16 26 H 0.05 0.79 6.64 -51.93 -0.34 0.45 16 27 H 0.27 6.38 8.31 -40.82 -0.34 6.05 16 28 H 0.40 5.87 6.57 -40.82 -0.27 5.60 16 29 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 30 H 0.13 1.12 8.06 -52.49 -0.42 0.69 16 31 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 32 H 0.15 2.69 6.22 -52.48 -0.33 2.36 16 LS Contribution 296.39 15.07 4.47 4.47 Total: -1.00 -29.31 296.39 -5.89 -35.20 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: -2.47 Total: 8.29 kcal Atomic # 6 Polarization: 5.66 SS G_CDS: -3.80 Total: 1.86 kcal Atomic # 7 Polarization: -50.59 SS G_CDS: 0.87 Total: -49.71 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: 0.07 Total: -14.76 kcal Atomic # 14 Polarization: 19.69 SS G_CDS: -5.02 Total: 14.67 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -29.31 -5.89 -35.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305935133.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.964 kcal (2) G-P(sol) polarization free energy of solvation -29.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 114.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.886 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.199 kcal (6) G-S(sol) free energy of system = (1) + (5) 108.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds