Wall clock time and date at job start Mon Mar 30 2020 04:42:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46493 * 109.46974 * 254.46092 * 3 2 1 5 5 C 1.37164 * 120.00420 * 263.76816 * 4 3 2 6 6 H 1.07996 * 120.00215 * 201.57106 * 5 4 3 7 7 C 1.38889 * 119.99413 * 21.57350 * 5 4 3 8 8 N 1.31464 * 120.00313 * 5.52233 * 7 5 4 9 9 Si 1.86806 * 119.99820 * 185.51794 * 7 5 4 10 10 H 1.48499 * 109.46877 * 359.97438 * 9 7 5 11 11 H 1.48502 * 109.46918 * 120.00300 * 9 7 5 12 12 H 1.48503 * 109.47007 * 240.00280 * 9 7 5 13 13 C 1.34780 * 120.00032 * 83.77453 * 4 3 2 14 14 O 1.21589 * 119.99854 * 180.02562 * 13 4 3 15 15 N 1.34774 * 120.00182 * 359.97438 * 13 4 3 16 16 C 1.39500 * 120.00629 * 184.79393 * 15 13 4 17 17 C 1.39118 * 119.91990 * 144.51789 * 16 15 13 18 18 C 1.37691 * 120.07385 * 180.02562 * 17 16 15 19 19 C 1.39783 * 119.92395 * 0.02562 * 18 17 16 20 20 C 1.43196 * 120.07904 * 179.97438 * 19 18 17 21 21 N 9.64510 * 100.65602 * 312.64325 * 2 1 3 22 22 C 1.39788 * 119.83845 * 0.25771 * 19 18 17 23 23 C 1.37687 * 119.91849 * 359.48680 * 22 19 18 24 24 H 4.40636 * 5.51389 * 179.97438 * 4 1 2 25 25 H 1.08999 * 109.46471 * 134.46600 * 3 2 1 26 26 H 1.09002 * 109.47009 * 14.46243 * 3 2 1 27 27 H 0.97000 * 120.00420 * 180.02562 * 8 7 5 28 28 H 0.97008 * 119.99713 * 4.80022 * 15 13 4 29 29 H 1.07987 * 119.96290 * 0.02562 * 17 16 15 30 30 H 1.07998 * 120.03493 * 179.97438 * 18 17 16 31 31 H 1.07994 * 120.03604 * 179.75165 * 22 19 18 32 32 H 1.08005 * 119.95647 * 180.23507 * 23 22 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1341 0.3709 1.3307 5 6 3.4837 1.6704 1.5960 6 1 4.1503 1.8937 2.4158 7 6 2.9804 2.6991 0.8102 8 7 2.0857 2.4402 -0.1175 9 14 3.5747 4.4507 1.0717 10 1 4.5747 4.4754 2.1692 11 1 4.1984 4.9536 -0.1786 12 1 2.4227 5.3155 1.4329 13 6 3.2398 -0.5655 2.2943 14 8 3.6445 -0.2581 3.3989 15 7 2.8960 -1.8423 2.0339 16 6 2.9097 -2.7910 3.0566 17 6 1.9542 -3.8018 3.0783 18 6 1.9645 -4.7395 4.0865 19 6 2.9362 -4.6746 5.0892 20 6 2.9496 -5.6478 6.1396 21 7 2.9575 -6.4212 6.9724 22 6 3.8911 -3.6540 5.0674 23 6 3.8779 -2.7228 4.0532 24 1 -1.0500 0.0002 -0.0002 25 1 3.0089 0.7207 -0.7334 26 1 3.0098 -0.9943 -0.2567 27 1 1.7344 3.1586 -0.6666 28 1 2.6390 -2.1017 1.1352 29 1 1.2035 -3.8511 2.3035 30 1 1.2221 -5.5237 4.1029 31 1 4.6408 -3.5985 5.8427 32 1 4.6178 -1.9362 4.0336 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000305935133.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:30 Heat of formation + Delta-G solvation = 92.789226 kcal Electronic energy + Delta-G solvation = -19077.177094 eV Core-core repulsion = 16005.121061 eV Total energy + Delta-G solvation = -3072.056034 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.090 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.60302 -39.91403 -37.71636 -37.06100 -35.58731 -33.79245 -33.06388 -31.98323 -30.77390 -28.26676 -26.64238 -24.39936 -23.81394 -21.54700 -19.88918 -19.69881 -19.53308 -18.36291 -17.90255 -16.81425 -16.46806 -15.89554 -15.64751 -15.41727 -15.03603 -14.82786 -14.57839 -14.54918 -14.32442 -14.02978 -13.76554 -13.31566 -13.27680 -13.09273 -12.82969 -12.45479 -12.16242 -12.09339 -11.34608 -11.24223 -11.03204 -10.75278 -10.49596 -9.90785 -9.81942 -9.03085 -8.21661 -5.91043 -0.15706 0.49449 1.42216 1.46214 1.56928 1.67003 1.82938 1.90318 2.28859 2.37176 2.45457 2.50506 2.96623 2.99255 3.19332 3.55933 3.92031 4.00738 4.04126 4.36543 4.55294 4.59864 4.71655 5.02925 5.10790 5.17210 5.37443 5.43732 5.48484 5.49793 5.60123 5.81666 6.06279 6.35017 6.51135 6.76898 7.17552 7.18745 7.51537 8.04691 8.75431 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.030853 B = 0.004540 C = 0.004087 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 907.298146 B = 6166.023999 C = 6848.636160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C -0.151 4.151 3 C 0.233 3.767 4 N -0.469 5.469 5 C -0.324 4.324 6 H 0.079 0.921 7 C -0.002 4.002 8 N -0.887 5.887 9 Si 0.988 3.012 10 H -0.275 1.275 11 H -0.269 1.269 12 H -0.284 1.284 13 C 0.653 3.347 14 O -0.635 6.635 15 N -0.679 5.679 16 C 0.198 3.802 17 C -0.152 4.152 18 C -0.030 4.030 19 C -0.072 4.072 20 C 0.290 3.710 21 N -0.473 5.473 22 C -0.042 4.042 23 C -0.149 4.149 24 H 0.230 0.770 25 H 0.109 0.891 26 H 0.088 0.912 27 H 0.269 0.731 28 H 0.415 0.585 29 H 0.159 0.841 30 H 0.165 0.835 31 H 0.144 0.856 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.508 -10.194 -1.941 10.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.269 4.269 2 C -0.153 4.153 3 C 0.111 3.889 4 N -0.190 5.190 5 C -0.453 4.453 6 H 0.097 0.903 7 C -0.203 4.203 8 N -0.526 5.526 9 Si 0.813 3.187 10 H -0.200 1.200 11 H -0.194 1.194 12 H -0.210 1.210 13 C 0.356 3.644 14 O -0.518 6.518 15 N -0.328 5.328 16 C 0.100 3.900 17 C -0.172 4.172 18 C -0.051 4.051 19 C -0.077 4.077 20 C -0.024 4.024 21 N -0.150 5.150 22 C -0.063 4.063 23 C -0.170 4.170 24 H 0.247 0.753 25 H 0.127 0.873 26 H 0.106 0.894 27 H 0.079 0.921 28 H 0.254 0.746 29 H 0.177 0.823 30 H 0.183 0.817 31 H 0.162 0.838 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.277 -10.917 -0.126 10.992 hybrid contribution -0.047 1.574 -0.638 1.699 sum -1.324 -9.344 -0.763 9.468 Atomic orbital electron populations 1.25139 0.96375 1.04913 1.00426 1.23529 0.95005 0.96779 0.99944 1.18391 0.84451 0.99817 0.86267 1.43020 1.60289 1.07038 1.08696 1.19546 1.27247 0.81439 1.17027 0.90334 1.25925 0.95421 1.02690 0.96308 1.70069 1.27652 1.33454 1.21456 0.84935 0.77759 0.77739 0.78258 1.19964 1.19403 1.20990 1.16250 0.82676 0.81192 0.84284 1.90725 1.56473 1.81058 1.23545 1.42617 1.71145 1.06587 1.12414 1.18164 0.93561 0.88939 0.89384 1.21024 0.98392 0.95963 1.01863 1.21153 0.95856 0.97672 0.90453 1.15965 1.01971 0.95306 0.94438 1.25770 0.92128 0.92210 0.92309 1.81273 1.09914 1.12003 1.11776 1.21082 0.96918 0.91261 0.97071 1.21210 0.99604 0.99930 0.96252 0.75309 0.87312 0.89398 0.92126 0.74627 0.82316 0.81708 0.83821 0.85904 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.07 19.25 74.32 1.43 -7.63 16 2 C -0.15 -6.04 11.51 31.13 0.36 -5.68 16 3 C 0.23 9.33 4.81 84.58 0.41 9.74 16 4 N -0.47 -22.15 2.61 -662.36 -1.73 -23.88 16 5 C -0.32 -17.17 9.33 84.02 0.78 -16.39 16 6 H 0.08 4.45 7.37 -2.91 -0.02 4.43 16 7 C 0.00 -0.11 5.21 84.90 0.44 0.33 16 8 N -0.89 -43.70 8.86 21.66 0.19 -43.51 16 9 Si 0.99 40.91 29.56 68.60 2.03 42.93 16 10 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 11 H -0.27 -10.53 7.11 99.48 0.71 -9.82 16 12 H -0.28 -11.77 7.11 99.48 0.71 -11.06 16 13 C 0.65 29.48 8.00 179.05 1.43 30.91 16 14 O -0.63 -33.00 13.45 -4.00 -0.05 -33.05 16 15 N -0.68 -22.80 5.19 -317.14 -1.65 -24.44 16 16 C 0.20 5.83 6.29 38.34 0.24 6.07 16 17 C -0.15 -3.19 9.95 22.35 0.22 -2.97 16 18 C -0.03 -0.55 9.75 22.51 0.22 -0.33 16 19 C -0.07 -1.56 5.74 -21.29 -0.12 -1.69 16 20 C 0.29 6.90 15.33 88.32 1.35 8.25 16 21 N -0.47 -13.27 18.54 19.01 0.35 -12.92 16 22 C -0.04 -1.03 9.75 22.51 0.22 -0.82 16 23 C -0.15 -4.60 8.66 22.35 0.19 -4.41 16 24 H 0.23 6.41 7.80 -4.42 -0.03 6.37 16 25 H 0.11 4.79 6.19 -2.39 -0.01 4.78 16 26 H 0.09 2.72 6.64 -2.39 -0.02 2.71 16 27 H 0.27 12.70 8.31 -92.71 -0.77 11.93 16 28 H 0.41 11.51 6.57 -92.70 -0.61 10.90 16 29 H 0.16 2.53 8.06 -2.92 -0.02 2.51 16 30 H 0.17 1.93 8.06 -2.91 -0.02 1.90 16 31 H 0.14 3.02 8.06 -2.91 -0.02 3.00 16 32 H 0.12 4.58 6.22 -2.91 -0.02 4.56 16 Total: -1.00 -65.02 296.39 6.89 -58.13 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: 0.57 Total: 21.35 kcal Atomic # 6 Polarization: 8.21 SS G_CDS: 7.18 Total: 15.39 kcal Atomic # 7 Polarization: -101.93 SS G_CDS: -2.83 Total: -104.75 kcal Atomic # 8 Polarization: -33.00 SS G_CDS: -0.05 Total: -33.05 kcal Atomic # 14 Polarization: 40.91 SS G_CDS: 2.03 Total: 42.93 kcal Total: -65.02 6.89 -58.13 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000305935133.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 150.918 kcal (2) G-P(sol) polarization free energy of solvation -65.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.895 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds