Wall clock time and date at job start Mon Mar 30 2020 04:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 109.46859 * 2 1 4 4 N 1.46905 * 109.47010 * 240.00708 * 2 1 3 5 5 C 1.46902 * 110.99800 * 84.99600 * 4 2 1 6 6 C 1.53006 * 109.46626 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.46866 * 180.02562 * 6 5 4 8 8 H 1.08003 * 119.99962 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00270 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99834 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00496 * 180.02562 * 9 7 6 12 12 H 1.48508 * 109.47141 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47494 * 119.99680 * 11 9 7 14 14 H 1.48505 * 109.47047 * 239.99860 * 11 9 7 15 15 C 1.50692 * 109.47219 * 120.00631 * 2 1 3 16 16 O 1.21276 * 120.00117 * 120.00195 * 15 2 1 17 17 N 1.34781 * 120.00179 * 299.99859 * 15 2 1 18 18 C 1.38997 * 120.00278 * 180.02562 * 17 15 2 19 19 N 1.29623 * 124.94200 * 359.70218 * 18 17 15 20 20 C 1.31995 * 116.91741 * 179.77280 * 19 18 17 21 21 C 1.33442 * 114.56409 * 0.51197 * 20 19 18 22 22 S 1.70968 * 124.94671 * 179.97438 * 18 17 15 23 23 H 1.09002 * 109.47182 * 59.99378 * 1 2 3 24 24 H 1.08998 * 109.47049 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47090 * 299.99397 * 1 2 3 26 26 H 1.00898 * 110.99743 * 321.04650 * 4 2 1 27 27 H 1.09000 * 109.47263 * 60.00269 * 5 4 2 28 28 H 1.09001 * 109.47582 * 299.99548 * 5 4 2 29 29 H 1.08993 * 109.46955 * 300.00347 * 6 5 4 30 30 H 1.09000 * 109.47050 * 60.00176 * 6 5 4 31 31 H 0.96992 * 120.00032 * 180.02562 * 10 9 7 32 32 H 0.97006 * 119.99667 * 359.97438 * 17 15 2 33 33 H 1.07995 * 122.71544 * 180.22088 * 20 19 18 34 34 H 1.08005 * 125.96889 * 179.72948 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1996 5 6 2.0824 0.2229 -2.3469 6 6 2.5962 -0.5325 -3.5743 7 6 2.6611 0.4065 -4.7512 8 1 2.3651 1.4387 -4.6354 9 6 3.0973 -0.0523 -5.9760 10 7 3.4573 -1.3094 -6.1171 11 14 3.1785 1.1117 -7.4346 12 1 2.7230 2.4619 -7.0164 13 1 4.5771 1.1913 -7.9273 14 1 2.2993 0.6074 -8.5200 15 6 2.0324 -0.7105 1.2303 16 8 2.7297 -1.6965 1.1189 17 7 1.7068 -0.2502 2.4545 18 6 2.1706 -0.9052 3.5894 19 7 2.9149 -1.9664 3.5820 20 6 3.2687 -2.4563 4.7555 21 6 2.7922 -1.7828 5.8043 22 16 1.8370 -0.4323 5.1981 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 1.4496 -1.4977 -1.4102 27 1 2.7588 1.0465 -2.1182 28 1 1.0870 0.6166 -2.5526 29 1 3.5916 -0.9259 -3.3684 30 1 1.9201 -1.3564 -3.8032 31 1 3.7646 -1.6321 -6.9786 32 1 1.1495 0.5388 2.5436 33 1 3.8895 -3.3340 4.8584 34 1 2.9626 -2.0234 6.8433 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309358959.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:13 Heat of formation + Delta-G solvation = 19.959674 kcal Electronic energy + Delta-G solvation = -17546.296638 eV Core-core repulsion = 14606.526430 eV Total energy + Delta-G solvation = -2939.770209 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.60149 -39.04852 -36.28179 -34.94736 -33.22695 -31.17783 -29.57847 -27.93581 -25.81344 -24.47606 -23.31868 -21.57595 -20.71120 -19.49191 -19.01242 -16.76913 -16.61431 -16.28431 -15.71793 -15.22272 -14.95573 -14.52122 -14.25218 -14.16545 -13.80949 -13.41797 -12.68472 -12.65966 -12.38684 -12.00483 -11.77766 -11.55898 -11.10240 -10.95614 -10.94027 -10.56517 -10.20347 -10.05541 -9.53405 -9.51991 -9.23637 -9.13134 -8.45367 -8.35284 -7.88404 -5.98699 -4.01918 0.56939 0.77444 1.44505 2.51583 2.71009 3.00344 3.31666 3.38968 3.42304 4.16302 4.43911 4.65145 4.78731 4.97724 5.03101 5.09299 5.31897 5.37136 5.48454 5.62583 5.70847 5.94873 6.11410 6.25283 6.31539 6.82360 6.93151 7.36677 7.69132 7.71018 7.79217 7.90840 8.08594 8.17211 8.42231 9.05664 9.61844 11.12719 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.049892 B = 0.003038 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.077959 B = 9215.862503 C = 9529.990028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.075 3.925 3 H 0.106 0.894 4 N -0.669 5.669 5 C 0.069 3.931 6 C 0.024 3.976 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.057 3.943 10 N -0.891 5.891 11 Si 0.893 3.107 12 H -0.273 1.273 13 H -0.284 1.284 14 H -0.284 1.284 15 C 0.507 3.493 16 O -0.439 6.439 17 N -0.641 5.641 18 C 0.285 3.715 19 N -0.481 5.481 20 C 0.073 3.927 21 C -0.283 4.283 22 S 0.100 5.900 23 H 0.075 0.925 24 H 0.064 0.936 25 H 0.060 0.940 26 H 0.346 0.654 27 H 0.060 0.940 28 H 0.020 0.980 29 H 0.027 0.973 30 H 0.015 0.985 31 H 0.260 0.740 32 H 0.419 0.581 33 H 0.179 0.821 34 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.071 3.671 24.481 25.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.040 4.040 3 H 0.124 0.876 4 N -0.300 5.300 5 C -0.059 4.059 6 C -0.013 4.013 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.144 4.144 10 N -0.530 5.530 11 Si 0.721 3.279 12 H -0.198 1.198 13 H -0.210 1.210 14 H -0.210 1.210 15 C 0.289 3.711 16 O -0.303 6.303 17 N -0.295 5.295 18 C -0.085 4.085 19 N -0.202 5.202 20 C -0.078 4.078 21 C -0.423 4.423 22 S 0.349 5.651 23 H 0.094 0.906 24 H 0.083 0.917 25 H 0.079 0.921 26 H 0.165 0.835 27 H 0.078 0.922 28 H 0.038 0.962 29 H 0.046 0.954 30 H 0.033 0.967 31 H 0.070 0.930 32 H 0.256 0.744 33 H 0.196 0.804 34 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -6.226 3.466 24.209 25.236 hybrid contribution -0.595 0.330 -0.832 1.075 sum -6.822 3.797 23.376 24.645 Atomic orbital electron populations 1.22515 0.95181 1.03178 1.03140 1.21427 0.93758 0.98721 0.90124 0.87605 1.60232 1.56743 1.10004 1.03026 1.22250 0.98397 0.95109 0.90142 1.19076 0.97307 0.95339 0.89608 1.21179 1.44094 0.96349 0.94459 0.92676 1.25015 0.95390 0.95103 0.98910 1.69990 1.44283 1.14366 1.24391 0.86529 0.77688 0.81057 0.82647 1.19786 1.20973 1.21048 1.21404 0.80922 0.85642 0.83129 1.90828 1.31644 1.23120 1.84708 1.43494 1.52166 1.30840 1.02962 1.23907 0.98085 0.94536 0.91926 1.66599 1.15265 1.10338 1.28000 1.21737 1.00057 1.00976 0.84990 1.26756 1.09507 1.01381 1.04657 1.83891 1.51601 1.30788 0.98814 0.90597 0.91696 0.92132 0.83467 0.92153 0.96187 0.95419 0.96651 0.92998 0.74363 0.80433 0.80422 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.86 9.06 37.16 0.34 -1.53 16 2 C 0.07 1.01 3.00 -68.86 -0.21 0.80 16 3 H 0.11 1.27 7.80 -51.93 -0.40 0.87 16 4 N -0.67 -12.17 5.74 -107.94 -0.62 -12.79 16 5 C 0.07 1.40 5.42 -3.82 -0.02 1.38 16 6 C 0.02 0.63 5.23 -27.88 -0.15 0.49 16 7 C -0.52 -14.77 9.11 -34.44 -0.31 -15.09 16 8 H 0.05 1.50 7.74 -52.48 -0.41 1.09 16 9 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 10 N -0.89 -27.19 13.29 55.43 0.74 -26.46 16 11 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 12 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 13 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 15 C 0.51 7.53 7.19 -10.99 -0.08 7.46 16 16 O -0.44 -8.79 15.06 5.56 0.08 -8.71 16 17 N -0.64 -7.12 5.30 -13.07 -0.07 -7.19 16 18 C 0.28 3.50 8.02 -87.35 -0.70 2.80 16 19 N -0.48 -7.16 8.65 -15.12 -0.13 -7.29 16 20 C 0.07 0.81 11.34 -19.16 -0.22 0.60 16 21 C -0.28 -2.39 11.35 29.06 0.33 -2.06 16 22 S 0.10 0.84 23.22 -107.50 -2.50 -1.66 16 23 H 0.08 0.81 7.45 -51.93 -0.39 0.43 16 24 H 0.06 0.71 8.13 -51.93 -0.42 0.28 16 25 H 0.06 0.43 7.57 -51.93 -0.39 0.03 16 26 H 0.35 6.27 8.47 -39.29 -0.33 5.94 16 27 H 0.06 1.22 8.06 -51.93 -0.42 0.80 16 28 H 0.02 0.38 7.44 -51.93 -0.39 0.00 16 29 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 32 H 0.42 2.85 8.24 -40.82 -0.34 2.51 16 33 H 0.18 1.55 8.06 -52.49 -0.42 1.13 16 34 H 0.18 0.94 8.06 -52.48 -0.42 0.52 16 LS Contribution 308.88 15.07 4.65 4.65 Total: -1.00 -35.86 308.88 -8.29 -44.15 By element: Atomic # 1 Polarization: 6.51 SS G_CDS: -4.31 Total: 2.20 kcal Atomic # 6 Polarization: -2.47 SS G_CDS: -1.11 Total: -3.58 kcal Atomic # 7 Polarization: -53.64 SS G_CDS: -0.08 Total: -53.72 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.08 Total: -8.71 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 0.84 SS G_CDS: -2.50 Total: -1.66 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -35.86 -8.29 -44.15 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309358959.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.113 kcal (2) G-P(sol) polarization free energy of solvation -35.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.288 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds