Wall clock time and date at job start Mon Mar 30 2020 04:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09006 * 109.46859 * 2 1 4 4 N 1.46905 * 109.47010 * 240.00708 * 2 1 3 5 5 C 1.46902 * 110.99800 * 84.99600 * 4 2 1 6 6 C 1.53006 * 109.46626 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.46866 * 180.02562 * 6 5 4 8 8 H 1.08003 * 119.99962 * 359.97438 * 7 6 5 9 9 C 1.37874 * 120.00270 * 180.02562 * 7 6 5 10 10 N 1.31522 * 119.99834 * 359.97438 * 9 7 6 11 11 Si 1.86793 * 120.00496 * 180.02562 * 9 7 6 12 12 H 1.48508 * 109.47141 * 359.97438 * 11 9 7 13 13 H 1.48501 * 109.47494 * 119.99680 * 11 9 7 14 14 H 1.48505 * 109.47047 * 239.99860 * 11 9 7 15 15 C 1.50692 * 109.47219 * 120.00631 * 2 1 3 16 16 O 1.21276 * 120.00117 * 120.00195 * 15 2 1 17 17 N 1.34781 * 120.00179 * 299.99859 * 15 2 1 18 18 C 1.38997 * 120.00278 * 180.02562 * 17 15 2 19 19 N 1.29623 * 124.94200 * 359.70218 * 18 17 15 20 20 C 1.31995 * 116.91741 * 179.77280 * 19 18 17 21 21 C 1.33442 * 114.56409 * 0.51197 * 20 19 18 22 22 S 1.70968 * 124.94671 * 179.97438 * 18 17 15 23 23 H 1.09002 * 109.47182 * 59.99378 * 1 2 3 24 24 H 1.08998 * 109.47049 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.47090 * 299.99397 * 1 2 3 26 26 H 1.00898 * 110.99743 * 321.04650 * 4 2 1 27 27 H 1.09000 * 109.47263 * 60.00269 * 5 4 2 28 28 H 1.09001 * 109.47582 * 299.99548 * 5 4 2 29 29 H 1.08993 * 109.46955 * 300.00347 * 6 5 4 30 30 H 1.09000 * 109.47050 * 60.00176 * 6 5 4 31 31 H 0.96992 * 120.00032 * 180.02562 * 10 9 7 32 32 H 0.97006 * 119.99667 * 359.97438 * 17 15 2 33 33 H 1.07995 * 122.71544 * 180.22088 * 20 19 18 34 34 H 1.08005 * 125.96889 * 179.72948 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0197 -0.6924 -1.1996 5 6 2.0824 0.2229 -2.3469 6 6 2.5962 -0.5325 -3.5743 7 6 2.6611 0.4065 -4.7512 8 1 2.3651 1.4387 -4.6354 9 6 3.0973 -0.0523 -5.9760 10 7 3.4573 -1.3094 -6.1171 11 14 3.1785 1.1117 -7.4346 12 1 2.7230 2.4619 -7.0164 13 1 4.5771 1.1913 -7.9273 14 1 2.2993 0.6074 -8.5200 15 6 2.0324 -0.7105 1.2303 16 8 2.7297 -1.6965 1.1189 17 7 1.7068 -0.2502 2.4545 18 6 2.1706 -0.9052 3.5894 19 7 2.9149 -1.9664 3.5820 20 6 3.2687 -2.4563 4.7555 21 6 2.7922 -1.7828 5.8043 22 16 1.8370 -0.4323 5.1981 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 1.4496 -1.4977 -1.4102 27 1 2.7588 1.0465 -2.1182 28 1 1.0870 0.6166 -2.5526 29 1 3.5916 -0.9259 -3.3684 30 1 1.9201 -1.3564 -3.8032 31 1 3.7646 -1.6321 -6.9786 32 1 1.1495 0.5388 2.5436 33 1 3.8895 -3.3340 4.8584 34 1 2.9626 -2.0234 6.8433 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309358959.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:13 Heat of formation + Delta-G solvation = -7.418137 kcal Electronic energy + Delta-G solvation = -17547.483829 eV Core-core repulsion = 14606.526430 eV Total energy + Delta-G solvation = -2940.957400 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.59189 -40.02702 -37.66840 -36.00148 -35.22088 -32.77765 -30.54004 -29.48886 -26.74666 -26.13687 -24.52897 -22.67053 -22.43527 -20.37680 -19.96971 -18.51022 -17.80838 -17.46178 -16.77355 -16.56065 -16.19597 -15.99346 -15.48674 -15.41947 -14.95561 -14.33515 -14.23642 -14.15361 -13.65041 -13.37553 -13.02153 -12.86182 -12.52388 -12.46499 -12.39911 -12.01233 -11.91888 -11.51413 -11.29513 -11.15350 -10.57297 -10.28595 -10.26313 -9.28258 -9.25116 -8.19262 -6.31493 -0.23070 0.00735 0.71599 1.41346 1.42463 1.51370 1.55578 1.85676 2.09236 2.41513 3.14457 3.18005 3.43435 3.92086 4.01489 4.09896 4.46355 4.51273 4.56836 4.58441 4.68723 4.80431 4.91401 5.06476 5.17618 5.28929 5.45335 5.66136 5.76866 5.96119 6.13282 6.25597 6.43017 6.86372 6.87526 7.20949 7.38267 8.93557 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.049892 B = 0.003038 C = 0.002937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 561.077959 B = 9215.862503 C = 9529.990028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.076 3.924 3 H 0.127 0.873 4 N -0.692 5.692 5 C 0.090 3.910 6 C 0.028 3.972 7 C -0.540 4.540 8 H 0.068 0.932 9 C -0.005 4.005 10 N -0.936 5.936 11 Si 0.971 3.029 12 H -0.256 1.256 13 H -0.281 1.281 14 H -0.278 1.278 15 C 0.510 3.490 16 O -0.504 6.504 17 N -0.625 5.625 18 C 0.241 3.759 19 N -0.535 5.535 20 C 0.038 3.962 21 C -0.264 4.264 22 S 0.184 5.816 23 H 0.076 0.924 24 H 0.055 0.945 25 H 0.101 0.899 26 H 0.342 0.658 27 H 0.064 0.936 28 H 0.039 0.961 29 H -0.015 1.015 30 H -0.010 1.010 31 H 0.263 0.737 32 H 0.439 0.561 33 H 0.187 0.813 34 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.587 6.304 26.391 28.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.038 4.038 3 H 0.144 0.856 4 N -0.323 5.323 5 C -0.038 4.038 6 C -0.009 4.009 7 C -0.578 4.578 8 H 0.086 0.914 9 C -0.202 4.202 10 N -0.576 5.576 11 Si 0.795 3.205 12 H -0.180 1.180 13 H -0.207 1.207 14 H -0.204 1.204 15 C 0.294 3.706 16 O -0.373 6.373 17 N -0.280 5.280 18 C -0.126 4.126 19 N -0.258 5.258 20 C -0.112 4.112 21 C -0.404 4.404 22 S 0.433 5.567 23 H 0.095 0.905 24 H 0.074 0.926 25 H 0.119 0.881 26 H 0.161 0.839 27 H 0.082 0.918 28 H 0.057 0.943 29 H 0.004 0.996 30 H 0.008 0.992 31 H 0.072 0.928 32 H 0.281 0.719 33 H 0.204 0.796 34 H 0.231 0.769 Dipole moment (debyes) X Y Z Total from point charges -7.786 6.157 26.184 28.002 hybrid contribution -0.126 -0.515 -1.205 1.316 sum -7.912 5.642 24.979 26.803 Atomic orbital electron populations 1.22439 0.92172 1.03287 1.05161 1.21538 0.96027 0.98716 0.87513 0.85562 1.60034 1.58296 1.10118 1.03856 1.21826 0.98975 0.94354 0.88628 1.18944 0.94625 0.95021 0.92356 1.21647 1.43768 0.97140 0.95247 0.91384 1.26064 0.94821 0.96861 1.02481 1.70149 1.45376 1.16703 1.25364 0.85315 0.77714 0.79169 0.78303 1.17978 1.20714 1.20410 1.21576 0.79808 0.84719 0.84469 1.90807 1.34715 1.25943 1.85816 1.43131 1.51838 1.31112 1.01927 1.24172 0.99362 0.95219 0.93877 1.66535 1.16531 1.12018 1.30709 1.21938 1.01922 1.02422 0.84928 1.27313 1.07089 1.00273 1.05763 1.83558 1.49574 1.28974 0.94555 0.90511 0.92588 0.88073 0.83949 0.91801 0.94300 0.99624 0.99199 0.92843 0.71944 0.79605 0.76917 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.16 9.06 71.98 0.65 -2.50 16 2 C 0.08 1.99 3.00 44.17 0.13 2.12 16 3 H 0.13 2.77 7.80 -2.38 -0.02 2.75 16 4 N -0.69 -25.79 5.74 -495.42 -2.84 -28.63 16 5 C 0.09 3.70 5.42 86.31 0.47 4.17 16 6 C 0.03 1.53 5.23 29.85 0.16 1.69 16 7 C -0.54 -30.89 9.11 25.60 0.23 -30.65 16 8 H 0.07 3.63 7.74 -2.91 -0.02 3.61 16 9 C 0.00 -0.28 5.46 84.65 0.46 0.18 16 10 N -0.94 -58.79 13.29 21.45 0.28 -58.51 16 11 Si 0.97 44.55 29.54 68.60 2.03 46.58 16 12 H -0.26 -10.95 7.11 99.48 0.71 -10.25 16 13 H -0.28 -12.72 7.11 99.48 0.71 -12.01 16 14 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 15 C 0.51 15.24 7.19 87.65 0.63 15.87 16 16 O -0.50 -21.19 15.06 -3.02 -0.05 -21.24 16 17 N -0.63 -13.12 5.30 -313.66 -1.66 -14.78 16 18 C 0.24 5.71 8.02 179.21 1.44 7.14 16 19 N -0.54 -16.22 8.65 -201.76 -1.75 -17.96 16 20 C 0.04 0.83 11.34 83.58 0.95 1.77 16 21 C -0.26 -3.76 11.35 66.73 0.76 -3.00 16 22 S 0.18 2.50 23.22 -56.49 -1.31 1.19 16 23 H 0.08 1.44 7.45 -2.39 -0.02 1.43 16 24 H 0.05 1.15 8.13 -2.39 -0.02 1.13 16 25 H 0.10 1.03 7.57 -2.39 -0.02 1.02 16 26 H 0.34 13.00 8.47 -89.70 -0.76 12.24 16 27 H 0.06 2.56 8.06 -2.39 -0.02 2.54 16 28 H 0.04 1.44 7.44 -2.39 -0.02 1.42 16 29 H -0.01 -0.91 8.14 -2.39 -0.02 -0.93 16 30 H -0.01 -0.61 8.14 -2.39 -0.02 -0.63 16 31 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 32 H 0.44 4.79 8.24 -92.70 -0.76 4.03 16 33 H 0.19 3.34 8.06 -2.91 -0.02 3.31 16 34 H 0.21 1.36 8.06 -2.91 -0.02 1.34 16 Total: -1.00 -82.79 308.88 0.19 -82.60 By element: Atomic # 1 Polarization: 14.35 SS G_CDS: -0.39 Total: 13.96 kcal Atomic # 6 Polarization: -9.08 SS G_CDS: 5.88 Total: -3.20 kcal Atomic # 7 Polarization: -113.92 SS G_CDS: -5.96 Total: -119.88 kcal Atomic # 8 Polarization: -21.19 SS G_CDS: -0.05 Total: -21.24 kcal Atomic # 14 Polarization: 44.55 SS G_CDS: 2.03 Total: 46.58 kcal Atomic # 16 Polarization: 2.50 SS G_CDS: -1.31 Total: 1.19 kcal Total: -82.79 0.19 -82.60 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309358959.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.181 kcal (2) G-P(sol) polarization free energy of solvation -82.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.189 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.599 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds