Wall clock time and date at job start Mon Mar 30 2020 05:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99790 * 2 1 4 4 C 1.50697 * 109.46819 * 179.97438 * 3 2 1 5 5 N 1.29317 * 126.06342 * 89.98167 * 4 3 2 6 6 N 1.26102 * 117.96946 * 180.02562 * 5 4 3 7 7 C 1.30239 * 117.62325 * 359.97438 * 6 5 4 8 8 N 1.38695 * 126.17092 * 179.97438 * 7 6 5 9 9 C 1.46500 * 120.00161 * 0.02617 * 8 7 6 10 10 C 1.52998 * 109.47460 * 184.81439 * 9 8 7 11 11 C 1.50707 * 115.54871 * 294.80432 * 10 9 8 12 12 H 1.07996 * 119.99643 * 99.43611 * 11 10 9 13 13 C 1.37879 * 120.00081 * 279.43916 * 11 10 9 14 14 N 1.31513 * 119.99905 * 5.41625 * 13 11 10 15 15 Si 1.86800 * 119.99641 * 185.41764 * 13 11 10 16 16 H 1.48499 * 109.46853 * 179.97438 * 15 13 11 17 17 H 1.48496 * 109.47413 * 299.99694 * 15 13 11 18 18 H 1.48498 * 109.47001 * 60.00235 * 15 13 11 19 19 C 1.52999 * 117.52115 * 80.50647 * 10 9 8 20 20 C 1.53000 * 117.50106 * 149.13954 * 10 9 8 21 21 S 1.76486 * 126.06941 * 270.28993 * 4 3 2 22 22 H 1.09000 * 109.47432 * 299.99885 * 1 2 3 23 23 H 1.09008 * 109.46803 * 59.99756 * 1 2 3 24 24 H 1.09002 * 109.47258 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46891 * 60.00619 * 3 2 1 26 26 H 1.08995 * 109.47495 * 300.00034 * 3 2 1 27 27 H 0.96998 * 120.00153 * 180.02562 * 8 7 6 28 28 H 1.08998 * 109.47265 * 64.80889 * 9 8 7 29 29 H 1.09000 * 109.46958 * 304.81542 * 9 8 7 30 30 H 0.97002 * 120.00132 * 354.99819 * 14 13 11 31 31 H 1.09001 * 117.50077 * 214.97358 * 19 10 9 32 32 H 1.08994 * 117.49511 * 359.97438 * 19 10 9 33 33 H 1.08997 * 117.49661 * 359.96892 * 20 10 9 34 34 H 1.08993 * 117.50129 * 144.97053 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2718 1.1258 -1.0444 6 7 5.5162 1.0268 -0.8663 7 6 5.9498 0.9931 0.3613 8 7 7.2742 0.8873 0.7591 9 6 8.3364 0.8021 -0.2462 10 6 9.6799 0.5735 0.4493 11 6 10.1579 1.7018 1.3266 12 1 10.0181 1.6505 2.3962 13 6 10.7736 2.7995 0.7635 14 7 10.8487 2.9123 -0.5446 15 14 11.5009 4.1264 1.8589 16 1 12.1014 5.1906 1.0150 17 1 10.4305 4.7108 2.7061 18 1 12.5498 3.5323 2.7262 19 6 10.0149 -0.8534 0.8883 20 6 10.7392 -0.2308 -0.3070 21 16 4.5472 1.0975 1.4276 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.6886 1.8463 0.8901 26 1 1.6886 1.8464 -0.8899 27 1 7.4973 0.8699 1.7029 28 1 8.3748 1.7316 -0.8141 29 1 8.1312 -0.0282 -0.9220 30 1 10.5366 2.1905 -1.1124 31 1 10.5810 -0.9760 1.8117 32 1 9.2780 -1.6295 0.6821 33 1 10.4788 -0.5974 -1.2999 34 1 11.7817 0.0564 -0.1704 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309871247.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:36 Heat of formation + Delta-G solvation = 40.489220 kcal Electronic energy + Delta-G solvation = -17743.025074 eV Core-core repulsion = 14804.145094 eV Total energy + Delta-G solvation = -2938.879981 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -40.53525 -38.04262 -37.60150 -34.95044 -32.06479 -31.30074 -28.10034 -26.71984 -25.71393 -24.99369 -23.67584 -21.46692 -20.05421 -19.49411 -18.73271 -17.00788 -16.75192 -16.64751 -15.88408 -15.41707 -15.18370 -14.51691 -13.88437 -13.80905 -13.39575 -13.14197 -12.77801 -12.60894 -12.53858 -12.21324 -11.68928 -11.07170 -10.92134 -10.61382 -10.45980 -10.21892 -10.20159 -10.01149 -9.77044 -9.63498 -9.34523 -8.75789 -8.64228 -8.48739 -7.63278 -6.49537 -4.28023 0.90445 0.95267 1.58452 2.96569 3.34838 3.35737 3.42489 3.54803 3.78931 4.39110 4.54039 4.84256 4.90614 5.08527 5.11625 5.17268 5.19739 5.37489 5.42810 5.65006 5.76840 5.99399 6.10309 6.20287 6.39228 6.44872 6.72819 6.85834 6.98190 7.07504 7.27229 7.65161 8.03261 8.22003 8.70030 9.10861 9.48662 10.89225 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.029904 B = 0.004205 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.105284 B = 6657.593244 C = 7046.123752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.385 6.385 3 C 0.160 3.840 4 C -0.035 4.035 5 N -0.194 5.194 6 N -0.356 5.356 7 C 0.327 3.673 8 N -0.639 5.639 9 C 0.164 3.836 10 C 0.002 3.998 11 C -0.582 4.582 12 H 0.054 0.946 13 C 0.031 3.969 14 N -0.896 5.896 15 Si 1.066 2.934 16 H -0.281 1.281 17 H -0.288 1.288 18 H -0.287 1.287 19 C -0.192 4.192 20 C -0.168 4.168 21 S 0.013 5.987 22 H 0.043 0.957 23 H 0.044 0.956 24 H 0.088 0.912 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.421 0.579 28 H 0.073 0.927 29 H 0.049 0.951 30 H 0.276 0.724 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.221 -3.599 4.050 16.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.303 6.303 3 C 0.079 3.921 4 C -0.321 4.321 5 N -0.031 5.031 6 N -0.207 5.207 7 C -0.046 4.046 8 N -0.273 5.273 9 C 0.039 3.961 10 C 0.001 3.999 11 C -0.619 4.619 12 H 0.072 0.928 13 C -0.176 4.176 14 N -0.529 5.529 15 Si 0.894 3.106 16 H -0.207 1.207 17 H -0.214 1.214 18 H -0.214 1.214 19 C -0.230 4.230 20 C -0.207 4.207 21 S 0.249 5.751 22 H 0.061 0.939 23 H 0.063 0.937 24 H 0.106 0.894 25 H 0.088 0.912 26 H 0.099 0.901 27 H 0.260 0.740 28 H 0.091 0.909 29 H 0.067 0.933 30 H 0.087 0.913 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -14.100 -2.306 3.591 14.732 hybrid contribution -0.752 -1.350 0.485 1.619 sum -14.852 -3.655 4.076 15.829 Atomic orbital electron populations 1.22770 0.80504 1.03041 1.00155 1.87989 1.19847 1.27026 1.95469 1.20460 0.84087 0.85472 1.02032 1.28347 1.00032 1.15100 0.88625 1.70581 0.97081 1.08435 1.27012 1.71431 1.04858 1.29547 1.14880 1.27018 0.91836 0.94868 0.90925 1.44351 0.98982 1.72817 1.11142 1.21363 0.85080 1.00957 0.88737 1.19312 0.90781 0.90895 0.98933 1.21206 1.43159 1.04153 0.93379 0.92793 1.25795 0.94468 0.99407 0.97928 1.70750 1.44174 1.34337 1.03666 0.83575 0.76479 0.75795 0.74744 1.20665 1.21423 1.21354 1.22882 1.03923 0.97257 0.98898 1.22780 0.98580 1.05134 0.94186 1.85618 1.01020 1.76197 1.12291 0.93885 0.93717 0.89399 0.91150 0.90086 0.74026 0.90870 0.93264 0.91258 0.89865 0.91228 0.91075 0.89383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.39 -4.79 10.69 -35.23 -0.38 -5.17 16 3 C 0.16 1.88 6.56 36.00 0.24 2.11 16 4 C -0.04 -0.56 7.42 -13.34 -0.10 -0.66 16 5 N -0.19 -3.70 11.55 33.57 0.39 -3.31 16 6 N -0.36 -7.34 11.24 31.00 0.35 -6.99 16 7 C 0.33 6.16 8.51 -87.15 -0.74 5.42 16 8 N -0.64 -12.29 5.64 -60.64 -0.34 -12.63 16 9 C 0.16 3.51 5.70 -4.04 -0.02 3.49 16 10 C 0.00 0.04 0.91 -155.66 -0.14 -0.10 16 11 C -0.58 -14.68 8.57 -34.44 -0.30 -14.97 16 12 H 0.05 1.36 7.82 -52.49 -0.41 0.94 16 13 C 0.03 0.82 5.42 -17.82 -0.10 0.73 16 14 N -0.90 -25.20 13.61 55.43 0.75 -24.45 16 15 Si 1.07 23.71 29.91 -169.99 -5.08 18.63 16 16 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.29 -6.16 7.11 56.52 0.40 -5.76 16 18 H -0.29 -6.13 7.11 56.52 0.40 -5.73 16 19 C -0.19 -3.83 9.96 -26.73 -0.27 -4.09 16 20 C -0.17 -3.60 8.97 -26.73 -0.24 -3.84 16 21 S 0.01 0.19 23.54 -107.50 -2.53 -2.34 16 22 H 0.04 0.27 8.14 -51.93 -0.42 -0.16 16 23 H 0.04 0.29 8.14 -51.92 -0.42 -0.13 16 24 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 25 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 27 H 0.42 7.60 8.46 -40.82 -0.35 7.25 16 28 H 0.07 1.79 7.64 -51.93 -0.40 1.39 16 29 H 0.05 1.03 8.09 -51.93 -0.42 0.61 16 30 H 0.28 7.68 6.08 -40.82 -0.25 7.44 16 31 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 32 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.07 1.41 8.14 -51.93 -0.42 0.99 16 34 H 0.09 2.00 8.14 -51.93 -0.42 1.58 16 LS Contribution 311.86 15.07 4.70 4.70 Total: -1.00 -29.69 311.86 -7.12 -36.81 By element: Atomic # 1 Polarization: 9.71 SS G_CDS: -4.42 Total: 5.29 kcal Atomic # 6 Polarization: -10.00 SS G_CDS: -0.55 Total: -10.55 kcal Atomic # 7 Polarization: -48.52 SS G_CDS: 1.15 Total: -47.37 kcal Atomic # 8 Polarization: -4.79 SS G_CDS: -0.38 Total: -5.17 kcal Atomic # 14 Polarization: 23.71 SS G_CDS: -5.08 Total: 18.63 kcal Atomic # 16 Polarization: 0.19 SS G_CDS: -2.53 Total: -2.34 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -29.69 -7.12 -36.81 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309871247.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.296 kcal (2) G-P(sol) polarization free energy of solvation -29.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.807 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds