Wall clock time and date at job start Mon Mar 30 2020 05:01:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42900 * 113.99790 * 2 1 4 4 C 1.50697 * 109.46819 * 179.97438 * 3 2 1 5 5 N 1.29317 * 126.06342 * 89.98167 * 4 3 2 6 6 N 1.26102 * 117.96946 * 180.02562 * 5 4 3 7 7 C 1.30239 * 117.62325 * 359.97438 * 6 5 4 8 8 N 1.38695 * 126.17092 * 179.97438 * 7 6 5 9 9 C 1.46500 * 120.00161 * 0.02617 * 8 7 6 10 10 C 1.52998 * 109.47460 * 184.81439 * 9 8 7 11 11 C 1.50707 * 115.54871 * 294.80432 * 10 9 8 12 12 H 1.07996 * 119.99643 * 99.43611 * 11 10 9 13 13 C 1.37879 * 120.00081 * 279.43916 * 11 10 9 14 14 N 1.31513 * 119.99905 * 5.41625 * 13 11 10 15 15 Si 1.86800 * 119.99641 * 185.41764 * 13 11 10 16 16 H 1.48499 * 109.46853 * 179.97438 * 15 13 11 17 17 H 1.48496 * 109.47413 * 299.99694 * 15 13 11 18 18 H 1.48498 * 109.47001 * 60.00235 * 15 13 11 19 19 C 1.52999 * 117.52115 * 80.50647 * 10 9 8 20 20 C 1.53000 * 117.50106 * 149.13954 * 10 9 8 21 21 S 1.76486 * 126.06941 * 270.28993 * 4 3 2 22 22 H 1.09000 * 109.47432 * 299.99885 * 1 2 3 23 23 H 1.09008 * 109.46803 * 59.99756 * 1 2 3 24 24 H 1.09002 * 109.47258 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.46891 * 60.00619 * 3 2 1 26 26 H 1.08995 * 109.47495 * 300.00034 * 3 2 1 27 27 H 0.96998 * 120.00153 * 180.02562 * 8 7 6 28 28 H 1.08998 * 109.47265 * 64.80889 * 9 8 7 29 29 H 1.09000 * 109.46958 * 304.81542 * 9 8 7 30 30 H 0.97002 * 120.00132 * 354.99819 * 14 13 11 31 31 H 1.09001 * 117.50077 * 214.97358 * 19 10 9 32 32 H 1.08994 * 117.49511 * 359.97438 * 19 10 9 33 33 H 1.08997 * 117.49661 * 359.96892 * 20 10 9 34 34 H 1.08993 * 117.50129 * 144.97053 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5125 1.1865 0.0006 5 7 4.2718 1.1258 -1.0444 6 7 5.5162 1.0268 -0.8663 7 6 5.9498 0.9931 0.3613 8 7 7.2742 0.8873 0.7591 9 6 8.3364 0.8021 -0.2462 10 6 9.6799 0.5735 0.4493 11 6 10.1579 1.7018 1.3266 12 1 10.0181 1.6505 2.3962 13 6 10.7736 2.7995 0.7635 14 7 10.8487 2.9123 -0.5446 15 14 11.5009 4.1264 1.8589 16 1 12.1014 5.1906 1.0150 17 1 10.4305 4.7108 2.7061 18 1 12.5498 3.5323 2.7262 19 6 10.0149 -0.8534 0.8883 20 6 10.7392 -0.2308 -0.3070 21 16 4.5472 1.0975 1.4276 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 1.6886 1.8463 0.8901 26 1 1.6886 1.8464 -0.8899 27 1 7.4973 0.8699 1.7029 28 1 8.3748 1.7316 -0.8141 29 1 8.1312 -0.0282 -0.9220 30 1 10.5366 2.1905 -1.1124 31 1 10.5810 -0.9760 1.8117 32 1 9.2780 -1.6295 0.6821 33 1 10.4788 -0.5974 -1.2999 34 1 11.7817 0.0564 -0.1704 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309871247.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:36 Heat of formation + Delta-G solvation = 21.016326 kcal Electronic energy + Delta-G solvation = -17743.869483 eV Core-core repulsion = 14804.145094 eV Total energy + Delta-G solvation = -2939.724389 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.93056 -39.36364 -38.81940 -36.46488 -34.01747 -32.51984 -29.36037 -27.95466 -27.00496 -26.69351 -24.93940 -23.12913 -21.77704 -20.85634 -20.20495 -18.65206 -18.14691 -17.63646 -16.95503 -16.57336 -16.47808 -15.92842 -15.64565 -15.39222 -14.79695 -14.59081 -14.49305 -14.03137 -13.66660 -13.33101 -12.87119 -12.67018 -12.45255 -12.26174 -11.97998 -11.93138 -11.54617 -11.45181 -11.13755 -10.68006 -10.60810 -10.55651 -10.50437 -10.35724 -9.10641 -8.54524 -6.32381 -0.41170 -0.37698 0.26973 1.55407 1.60825 1.61330 1.79492 2.01891 2.57260 2.82496 3.19375 3.23817 3.51135 3.76997 3.97747 4.02824 4.29864 4.39201 4.41111 4.47992 4.56228 4.56728 4.64506 4.72874 4.80445 4.91022 5.02639 5.25508 5.41215 5.69214 6.09042 6.11102 6.20651 6.25487 6.66517 7.50853 7.73910 8.84800 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.029904 B = 0.004205 C = 0.003973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 936.105284 B = 6657.593244 C = 7046.123752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.415 6.415 3 C 0.156 3.844 4 C -0.022 4.022 5 N -0.234 5.234 6 N -0.390 5.390 7 C 0.299 3.701 8 N -0.644 5.644 9 C 0.185 3.815 10 C -0.020 4.020 11 C -0.580 4.580 12 H 0.053 0.947 13 C -0.016 4.016 14 N -0.929 5.929 15 Si 1.107 2.893 16 H -0.292 1.292 17 H -0.274 1.274 18 H -0.272 1.272 19 C -0.164 4.164 20 C -0.174 4.174 21 S 0.080 5.920 22 H 0.062 0.938 23 H 0.056 0.944 24 H 0.097 0.903 25 H 0.103 0.897 26 H 0.096 0.904 27 H 0.425 0.575 28 H 0.034 0.966 29 H 0.050 0.950 30 H 0.266 0.734 31 H 0.088 0.912 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.253 -3.971 5.875 18.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.334 6.334 3 C 0.076 3.924 4 C -0.308 4.308 5 N -0.069 5.069 6 N -0.240 5.240 7 C -0.074 4.074 8 N -0.281 5.281 9 C 0.059 3.941 10 C -0.021 4.021 11 C -0.618 4.618 12 H 0.071 0.929 13 C -0.217 4.217 14 N -0.565 5.565 15 Si 0.930 3.070 16 H -0.217 1.217 17 H -0.199 1.199 18 H -0.197 1.197 19 C -0.201 4.201 20 C -0.213 4.213 21 S 0.317 5.683 22 H 0.081 0.919 23 H 0.075 0.925 24 H 0.115 0.885 25 H 0.121 0.879 26 H 0.114 0.886 27 H 0.265 0.735 28 H 0.052 0.948 29 H 0.068 0.932 30 H 0.077 0.923 31 H 0.106 0.894 32 H 0.110 0.890 33 H 0.101 0.899 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -16.175 -2.698 5.426 17.273 hybrid contribution -0.354 -1.277 -0.032 1.326 sum -16.529 -3.976 5.394 17.835 Atomic orbital electron populations 1.23017 0.78053 1.04237 1.01714 1.87926 1.22466 1.27163 1.95803 1.20751 0.81326 0.85967 1.04369 1.29310 1.02051 1.11010 0.88469 1.70581 0.96851 1.11125 1.28391 1.71377 1.06079 1.29992 1.16595 1.27136 0.92522 0.95776 0.91971 1.44042 0.98903 1.74467 1.10650 1.20862 0.85489 0.98872 0.88874 1.19302 0.91363 0.91695 0.99786 1.21489 1.41928 1.04683 0.93690 0.92852 1.26967 0.94832 1.01741 0.98204 1.70844 1.46457 1.34550 1.04611 0.83040 0.76582 0.73701 0.73644 1.21749 1.19898 1.19686 1.22884 1.03161 0.95895 0.98124 1.22730 0.97403 1.05581 0.95566 1.85349 0.98050 1.74626 1.10240 0.91901 0.92546 0.88500 0.87869 0.88646 0.73511 0.94811 0.93201 0.92339 0.89396 0.89016 0.89927 0.91245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.32 11.01 113.37 1.25 1.57 16 2 O -0.41 -9.19 10.69 -148.98 -1.59 -10.78 16 3 C 0.16 3.19 6.56 71.24 0.47 3.66 16 4 C -0.02 -0.65 7.42 88.48 0.66 0.00 16 5 N -0.23 -8.81 11.55 -47.71 -0.55 -9.37 16 6 N -0.39 -16.26 11.24 -55.85 -0.63 -16.89 16 7 C 0.30 11.20 8.51 179.13 1.52 12.72 16 8 N -0.64 -24.83 5.64 -345.75 -1.95 -26.78 16 9 C 0.19 8.14 5.70 86.38 0.49 8.63 16 10 C -0.02 -0.92 0.91 -52.93 -0.05 -0.97 16 11 C -0.58 -29.35 8.57 25.60 0.22 -29.13 16 12 H 0.05 2.64 7.82 -2.91 -0.02 2.62 16 13 C -0.02 -0.88 5.42 84.66 0.46 -0.42 16 14 N -0.93 -53.75 13.61 21.45 0.29 -53.46 16 15 Si 1.11 47.81 29.91 68.60 2.05 49.86 16 16 H -0.29 -12.99 7.11 99.48 0.71 -12.29 16 17 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 18 H -0.27 -10.93 7.11 99.48 0.71 -10.22 16 19 C -0.16 -6.28 9.96 30.60 0.30 -5.98 16 20 C -0.17 -7.49 8.97 30.60 0.27 -7.22 16 21 S 0.08 2.28 23.54 -56.49 -1.33 0.95 16 22 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 23 H 0.06 0.57 8.14 -2.38 -0.02 0.55 16 24 H 0.10 1.02 8.14 -2.39 -0.02 1.00 16 25 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 26 H 0.10 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.43 15.14 8.46 -92.71 -0.78 14.36 16 28 H 0.03 1.73 7.64 -2.39 -0.02 1.71 16 29 H 0.05 2.14 8.09 -2.39 -0.02 2.12 16 30 H 0.27 15.43 6.08 -92.71 -0.56 14.87 16 31 H 0.09 3.30 8.14 -2.39 -0.02 3.28 16 32 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 33 H 0.08 3.30 8.14 -2.39 -0.02 3.29 16 34 H 0.07 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -65.18 311.86 2.43 -62.75 By element: Atomic # 1 Polarization: 20.30 SS G_CDS: 0.54 Total: 20.84 kcal Atomic # 6 Polarization: -22.72 SS G_CDS: 5.60 Total: -17.13 kcal Atomic # 7 Polarization: -103.66 SS G_CDS: -2.84 Total: -106.49 kcal Atomic # 8 Polarization: -9.19 SS G_CDS: -1.59 Total: -10.78 kcal Atomic # 14 Polarization: 47.81 SS G_CDS: 2.05 Total: 49.86 kcal Atomic # 16 Polarization: 2.28 SS G_CDS: -1.33 Total: 0.95 kcal Total: -65.18 2.43 -62.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309871247.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.767 kcal (2) G-P(sol) polarization free energy of solvation -65.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.750 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds