Wall clock time and date at job start Mon Mar 30 2020 04:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47183 * 1.12907 * 3 2 1 5 5 C 1.36867 * 119.99810 * 130.27653 * 4 3 2 6 6 H 1.07998 * 119.99848 * 214.28922 * 5 4 3 7 7 C 1.39049 * 119.99838 * 34.29455 * 5 4 3 8 8 N 1.31359 * 120.00130 * 34.42872 * 7 5 4 9 9 Si 1.86804 * 119.99843 * 214.42938 * 7 5 4 10 10 H 1.48500 * 109.46738 * 90.00021 * 9 7 5 11 11 H 1.48493 * 109.46895 * 210.00137 * 9 7 5 12 12 H 1.48502 * 109.47094 * 329.99946 * 9 7 5 13 13 C 1.34773 * 120.00457 * 310.28094 * 4 3 2 14 14 O 1.21617 * 120.00378 * 186.97104 * 13 4 3 15 15 C 1.47575 * 119.99823 * 6.97144 * 13 4 3 16 16 C 1.40382 * 119.87362 * 336.73591 * 15 13 4 17 17 C 1.35993 * 120.53533 * 179.97438 * 16 15 13 18 18 C 1.40329 * 120.05415 * 0.03960 * 17 16 15 19 19 C 1.41451 * 133.36383 * 180.02562 * 18 17 16 20 20 N 1.30198 * 108.73206 * 179.97438 * 19 18 17 21 21 N 1.40023 * 109.78825 * 359.77976 * 20 19 18 22 22 H 0.96996 * 125.97241 * 180.28064 * 21 20 19 23 23 C 1.37272 * 108.04838 * 0.36580 * 21 20 19 24 24 C 1.38885 * 133.65275 * 179.97438 * 23 21 20 25 25 H 4.40641 * 5.51441 * 179.97438 * 4 1 2 26 26 H 1.09002 * 109.46984 * 241.13224 * 3 2 1 27 27 H 1.09000 * 109.47022 * 121.13193 * 3 2 1 28 28 H 0.96998 * 120.00391 * 179.97438 * 8 7 5 29 29 H 1.07993 * 119.73078 * 359.96891 * 16 15 13 30 30 H 1.08007 * 119.97311 * 180.02562 * 17 16 15 31 31 H 1.08000 * 125.63568 * 359.97438 * 19 18 17 32 32 H 1.08000 * 120.20364 * 359.70055 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3800 -0.0272 5 6 4.0857 -1.7514 -0.9390 6 1 4.0697 -2.7453 -1.3614 7 6 5.0721 -0.8492 -1.3215 8 7 5.5463 0.0134 -0.4517 9 14 5.7231 -0.8638 -3.0724 10 1 4.9088 0.0524 -3.9108 11 1 7.1382 -0.4137 -3.0781 12 1 5.6396 -2.2416 -3.6201 13 6 2.6486 -2.2846 0.8455 14 8 3.1418 -3.3944 0.9092 15 6 1.5175 -1.9283 1.7238 16 6 1.2612 -0.5807 2.0220 17 6 0.2222 -0.2371 2.8294 18 6 -0.6042 -1.2324 3.3732 19 6 -1.7337 -1.1991 4.2240 20 7 -2.1368 -2.4195 4.4318 21 7 -1.3140 -3.3152 3.7379 22 1 -1.4057 -4.2807 3.7256 23 6 -0.3537 -2.5879 3.0797 24 6 0.7093 -2.9295 2.2537 25 1 -1.0498 -0.0004 0.0002 26 1 3.0091 0.4970 0.9000 27 1 3.0091 0.5321 -0.8797 28 1 6.2347 0.6426 -0.7184 29 1 1.8944 0.1895 1.6069 30 1 0.0331 0.8026 3.0525 31 1 -2.1869 -0.3085 4.6335 32 1 0.9071 -3.9659 2.0233 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310575628.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:20 Heat of formation + Delta-G solvation = 175.606923 kcal Electronic energy + Delta-G solvation = -19850.988789 eV Core-core repulsion = 16782.524000 eV Total energy + Delta-G solvation = -3068.464789 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.090 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.27206 -39.46240 -36.48848 -35.47015 -33.12574 -32.22013 -31.41964 -29.62972 -28.83939 -26.92509 -25.33336 -23.05862 -22.14354 -21.38754 -19.63332 -18.27050 -17.68817 -16.94113 -16.71369 -15.33299 -15.23397 -14.71460 -14.64927 -14.33146 -14.11937 -13.71151 -13.50700 -13.27617 -12.73452 -12.68733 -11.99997 -11.56048 -11.29062 -11.17445 -10.80273 -10.72131 -10.50201 -10.27257 -10.24124 -9.94672 -9.53922 -9.04532 -8.59251 -8.13058 -7.83530 -7.41489 -6.62323 -4.04242 0.97735 1.81084 2.62942 2.84826 3.06139 3.15687 3.20570 3.25805 3.34344 3.75280 4.04806 4.39974 4.64993 4.70495 4.78187 4.98925 5.04569 5.16548 5.43872 5.53331 5.68385 5.89162 6.03396 6.09806 6.26013 6.39542 6.43007 6.57612 6.71078 6.84756 7.09541 7.41911 7.44997 7.71462 8.01140 8.06680 8.29633 9.01035 9.15592 9.82183 10.43764 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.037753 B = 0.005428 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.479951 B = 5157.081505 C = 5526.613423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.168 4.168 3 C 0.213 3.787 4 N -0.422 5.422 5 C -0.328 4.328 6 H 0.099 0.901 7 C 0.050 3.950 8 N -0.838 5.838 9 Si 0.908 3.092 10 H -0.274 1.274 11 H -0.283 1.283 12 H -0.266 1.266 13 C 0.489 3.511 14 O -0.571 6.571 15 C -0.058 4.058 16 C -0.126 4.126 17 C -0.076 4.076 18 C -0.165 4.165 19 C 0.066 3.934 20 N -0.262 5.262 21 N -0.510 5.510 22 H 0.438 0.562 23 C 0.110 3.890 24 C -0.096 4.096 25 H 0.210 0.790 26 H 0.091 0.909 27 H 0.101 0.899 28 H 0.273 0.727 29 H 0.166 0.834 30 H 0.124 0.876 31 H 0.188 0.812 32 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.666 3.712 4.186 12.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.169 4.169 3 C 0.090 3.910 4 N -0.140 5.140 5 C -0.455 4.455 6 H 0.117 0.883 7 C -0.159 4.159 8 N -0.472 5.472 9 Si 0.733 3.267 10 H -0.200 1.200 11 H -0.209 1.209 12 H -0.190 1.190 13 C 0.279 3.721 14 O -0.455 6.455 15 C -0.065 4.065 16 C -0.144 4.144 17 C -0.097 4.097 18 C -0.173 4.173 19 C -0.129 4.129 20 N -0.077 5.077 21 N -0.227 5.227 22 H 0.282 0.718 23 C -0.005 4.005 24 C -0.119 4.119 25 H 0.227 0.773 26 H 0.108 0.892 27 H 0.119 0.881 28 H 0.083 0.917 29 H 0.182 0.818 30 H 0.142 0.858 31 H 0.205 0.795 32 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -11.091 2.567 4.820 12.362 hybrid contribution 0.665 0.135 -1.169 1.352 sum -10.426 2.701 3.651 11.372 Atomic orbital electron populations 1.24704 0.95638 0.99086 1.03796 1.23233 0.95220 1.01402 0.97058 1.18954 0.81378 0.87117 1.03527 1.43328 1.34547 1.06849 1.29255 1.19402 1.06721 1.01869 1.17477 0.88298 1.25374 0.94470 0.96927 0.99134 1.70178 1.24137 1.20178 1.32686 0.86228 0.77768 0.79392 0.83278 1.19954 1.20877 1.18983 1.18030 0.85495 0.86945 0.81639 1.90627 1.62385 1.22450 1.70032 1.20100 0.95694 0.92921 0.97747 1.22082 0.98968 0.96897 0.96469 1.20034 0.94511 0.97756 0.97422 1.18963 1.00107 0.93167 1.05052 1.23816 0.95399 0.95628 0.98087 1.76552 1.15650 1.00183 1.15340 1.45970 1.25002 1.08345 1.43356 0.71765 1.18684 0.92939 0.91660 0.97250 1.20014 0.93477 1.00077 0.98324 0.77337 0.89157 0.88091 0.91686 0.81800 0.85803 0.79485 0.85204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.31 16.32 29.55 0.48 -2.83 16 2 C -0.17 -2.98 8.79 -37.14 -0.33 -3.30 16 3 C 0.21 4.32 4.74 -6.83 -0.03 4.29 16 4 N -0.42 -10.37 2.78 -120.36 -0.33 -10.70 16 5 C -0.33 -8.72 8.79 -15.00 -0.13 -8.85 16 6 H 0.10 2.78 7.88 -52.49 -0.41 2.37 16 7 C 0.05 1.25 4.36 -17.45 -0.08 1.17 16 8 N -0.84 -21.15 12.92 55.50 0.72 -20.44 16 9 Si 0.91 19.12 29.67 -169.99 -5.04 14.08 16 10 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 11 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 12 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 13 C 0.49 12.16 7.29 -12.45 -0.09 12.07 16 14 O -0.57 -16.19 16.44 5.26 0.09 -16.10 16 15 C -0.06 -1.18 4.91 -104.94 -0.52 -1.70 16 16 C -0.13 -2.18 5.32 -39.60 -0.21 -2.39 16 17 C -0.08 -1.12 8.87 -39.60 -0.35 -1.47 16 18 C -0.16 -2.48 6.17 -106.87 -0.66 -3.13 16 19 C 0.07 0.85 12.04 -17.02 -0.20 0.64 16 20 N -0.26 -3.70 12.57 30.85 0.39 -3.31 16 21 N -0.51 -7.21 7.45 32.35 0.24 -6.97 16 22 H 0.44 4.93 8.96 -182.66 -1.64 3.29 16 23 C 0.11 1.79 7.32 -84.17 -0.62 1.18 16 24 C -0.10 -1.77 9.61 -39.00 -0.37 -2.15 16 25 H 0.21 2.58 7.80 -54.10 -0.42 2.16 16 26 H 0.09 1.75 6.33 -51.93 -0.33 1.42 16 27 H 0.10 2.09 7.11 -51.93 -0.37 1.72 16 28 H 0.27 6.40 8.31 -40.82 -0.34 6.06 16 29 H 0.17 2.82 2.84 -57.77 -0.16 2.66 16 30 H 0.12 1.43 8.06 -52.48 -0.42 1.00 16 31 H 0.19 1.62 8.06 -52.49 -0.42 1.20 16 32 H 0.13 2.41 7.80 -52.49 -0.41 2.00 16 LS Contribution 280.80 15.07 4.23 4.23 Total: -1.00 -31.26 280.80 -6.54 -37.81 By element: Atomic # 1 Polarization: 11.60 SS G_CDS: -3.72 Total: 7.88 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -3.11 Total: -6.47 kcal Atomic # 7 Polarization: -42.43 SS G_CDS: 1.01 Total: -41.42 kcal Atomic # 8 Polarization: -16.19 SS G_CDS: 0.09 Total: -16.10 kcal Atomic # 14 Polarization: 19.12 SS G_CDS: -5.04 Total: 14.08 kcal Total LS contribution 4.23 Total: 4.23 kcal Total: -31.26 -6.54 -37.81 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310575628.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.416 kcal (2) G-P(sol) polarization free energy of solvation -31.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 182.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.809 kcal (6) G-S(sol) free energy of system = (1) + (5) 175.607 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds