Wall clock time and date at job start Mon Mar 30 2020 04:42:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17396 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47183 * 1.12907 * 3 2 1 5 5 C 1.36867 * 119.99810 * 130.27653 * 4 3 2 6 6 H 1.07998 * 119.99848 * 214.28922 * 5 4 3 7 7 C 1.39049 * 119.99838 * 34.29455 * 5 4 3 8 8 N 1.31359 * 120.00130 * 34.42872 * 7 5 4 9 9 Si 1.86804 * 119.99843 * 214.42938 * 7 5 4 10 10 H 1.48500 * 109.46738 * 90.00021 * 9 7 5 11 11 H 1.48493 * 109.46895 * 210.00137 * 9 7 5 12 12 H 1.48502 * 109.47094 * 329.99946 * 9 7 5 13 13 C 1.34773 * 120.00457 * 310.28094 * 4 3 2 14 14 O 1.21617 * 120.00378 * 186.97104 * 13 4 3 15 15 C 1.47575 * 119.99823 * 6.97144 * 13 4 3 16 16 C 1.40382 * 119.87362 * 336.73591 * 15 13 4 17 17 C 1.35993 * 120.53533 * 179.97438 * 16 15 13 18 18 C 1.40329 * 120.05415 * 0.03960 * 17 16 15 19 19 C 1.41451 * 133.36383 * 180.02562 * 18 17 16 20 20 N 1.30198 * 108.73206 * 179.97438 * 19 18 17 21 21 N 1.40023 * 109.78825 * 359.77976 * 20 19 18 22 22 H 0.96996 * 125.97241 * 180.28064 * 21 20 19 23 23 C 1.37272 * 108.04838 * 0.36580 * 21 20 19 24 24 C 1.38885 * 133.65275 * 179.97438 * 23 21 20 25 25 H 4.40641 * 5.51441 * 179.97438 * 4 1 2 26 26 H 1.09002 * 109.46984 * 241.13224 * 3 2 1 27 27 H 1.09000 * 109.47022 * 121.13193 * 3 2 1 28 28 H 0.96998 * 120.00391 * 179.97438 * 8 7 5 29 29 H 1.07993 * 119.73078 * 359.96891 * 16 15 13 30 30 H 1.08007 * 119.97311 * 180.02562 * 17 16 15 31 31 H 1.08000 * 125.63568 * 359.97438 * 19 18 17 32 32 H 1.08000 * 120.20364 * 359.70055 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1350 -1.3800 -0.0272 5 6 4.0857 -1.7514 -0.9390 6 1 4.0697 -2.7453 -1.3614 7 6 5.0721 -0.8492 -1.3215 8 7 5.5463 0.0134 -0.4517 9 14 5.7231 -0.8638 -3.0724 10 1 4.9088 0.0524 -3.9108 11 1 7.1382 -0.4137 -3.0781 12 1 5.6396 -2.2416 -3.6201 13 6 2.6486 -2.2846 0.8455 14 8 3.1418 -3.3944 0.9092 15 6 1.5175 -1.9283 1.7238 16 6 1.2612 -0.5807 2.0220 17 6 0.2222 -0.2371 2.8294 18 6 -0.6042 -1.2324 3.3732 19 6 -1.7337 -1.1991 4.2240 20 7 -2.1368 -2.4195 4.4318 21 7 -1.3140 -3.3152 3.7379 22 1 -1.4057 -4.2807 3.7256 23 6 -0.3537 -2.5879 3.0797 24 6 0.7093 -2.9295 2.2537 25 1 -1.0498 -0.0004 0.0002 26 1 3.0091 0.4970 0.9000 27 1 3.0091 0.5321 -0.8797 28 1 6.2347 0.6426 -0.7184 29 1 1.8944 0.1895 1.6069 30 1 0.0331 0.8026 3.0525 31 1 -2.1869 -0.3085 4.6335 32 1 0.9071 -3.9659 2.0233 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310575628.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:20 Heat of formation + Delta-G solvation = 154.654230 kcal Electronic energy + Delta-G solvation = -19851.897366 eV Core-core repulsion = 16782.524000 eV Total energy + Delta-G solvation = -3069.373366 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.090 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.50816 -41.04365 -38.06691 -37.18424 -34.75998 -33.50483 -33.07726 -30.98298 -30.08250 -28.53726 -27.10933 -24.56476 -23.42071 -22.47768 -21.26490 -19.83161 -19.19585 -18.27497 -18.19276 -17.15145 -16.82126 -16.25444 -15.98470 -15.66326 -15.51771 -15.24677 -14.94348 -14.51685 -14.39129 -14.24661 -13.75988 -13.11216 -12.91058 -12.65715 -12.57137 -12.18282 -11.92547 -11.70948 -11.49569 -11.32428 -10.96970 -10.70099 -10.50783 -9.78614 -9.44881 -8.64575 -8.53914 -6.06446 -0.34311 0.53116 1.34083 1.44084 1.50173 1.55486 1.72314 1.82533 2.03110 2.15201 2.31213 2.80603 3.01640 3.07776 3.56350 3.68436 3.83457 3.87675 4.01173 4.25156 4.38466 4.54434 4.61208 4.81734 4.88937 4.99865 5.12569 5.31671 5.44015 5.49656 5.54237 5.87735 6.09778 6.32789 6.39271 6.64171 6.73973 7.07486 7.25969 7.93183 8.52683 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.037753 B = 0.005428 C = 0.005065 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.479951 B = 5157.081505 C = 5526.613423 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.209 4.209 3 C 0.222 3.778 4 N -0.432 5.432 5 C -0.371 4.371 6 H 0.066 0.934 7 C 0.025 3.975 8 N -0.859 5.859 9 Si 0.976 3.024 10 H -0.257 1.257 11 H -0.273 1.273 12 H -0.275 1.275 13 C 0.472 3.528 14 O -0.629 6.629 15 C -0.081 4.081 16 C -0.133 4.133 17 C -0.050 4.050 18 C -0.163 4.163 19 C 0.084 3.916 20 N -0.270 5.270 21 N -0.510 5.510 22 H 0.447 0.553 23 C 0.101 3.899 24 C -0.105 4.105 25 H 0.247 0.753 26 H 0.095 0.905 27 H 0.089 0.911 28 H 0.283 0.717 29 H 0.163 0.837 30 H 0.169 0.831 31 H 0.236 0.764 32 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.299 6.316 4.983 15.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.210 4.210 3 C 0.100 3.900 4 N -0.148 5.148 5 C -0.498 4.498 6 H 0.084 0.916 7 C -0.183 4.183 8 N -0.493 5.493 9 Si 0.798 3.202 10 H -0.181 1.181 11 H -0.198 1.198 12 H -0.200 1.200 13 C 0.264 3.736 14 O -0.518 6.518 15 C -0.088 4.088 16 C -0.151 4.151 17 C -0.071 4.071 18 C -0.171 4.171 19 C -0.112 4.112 20 N -0.085 5.085 21 N -0.227 5.227 22 H 0.293 0.707 23 C -0.015 4.015 24 C -0.129 4.129 25 H 0.263 0.737 26 H 0.112 0.888 27 H 0.107 0.893 28 H 0.093 0.907 29 H 0.180 0.820 30 H 0.186 0.814 31 H 0.253 0.747 32 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -13.745 5.197 5.623 15.734 hybrid contribution 1.374 -0.678 -1.286 2.000 sum -12.371 4.519 4.338 13.867 Atomic orbital electron populations 1.25417 0.96046 0.96077 1.01085 1.22722 0.94755 1.03979 0.99520 1.18809 0.83612 0.84451 1.03146 1.43560 1.34252 1.08501 1.28494 1.19304 1.09330 1.01692 1.19466 0.91624 1.26107 0.93871 0.95920 1.02402 1.70182 1.24426 1.20503 1.34170 0.85234 0.77673 0.79032 0.78228 1.18121 1.19814 1.19996 1.18884 0.86582 0.86318 0.81862 1.90552 1.64564 1.24731 1.71934 1.19763 0.95313 0.94980 0.98694 1.21976 1.00292 0.95107 0.97759 1.20397 0.92223 0.99786 0.94662 1.19304 1.00636 0.92298 1.04859 1.24551 0.93813 0.96530 0.96288 1.76596 1.15695 1.00829 1.15398 1.46075 1.24481 1.09060 1.43046 0.70709 1.18628 0.92682 0.93127 0.97110 1.19867 0.94614 0.99043 0.99328 0.73676 0.88753 0.89298 0.90744 0.82032 0.81357 0.74741 0.86938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.69 16.32 74.32 1.21 -3.47 16 2 C -0.21 -7.21 8.79 31.12 0.27 -6.94 16 3 C 0.22 9.25 4.74 84.58 0.40 9.65 16 4 N -0.43 -22.49 2.78 -652.97 -1.81 -24.31 16 5 C -0.37 -21.04 8.79 84.10 0.74 -20.30 16 6 H 0.07 4.05 7.88 -2.91 -0.02 4.02 16 7 C 0.03 1.29 4.36 84.96 0.37 1.66 16 8 N -0.86 -44.31 12.92 21.68 0.28 -44.02 16 9 Si 0.98 40.05 29.67 68.60 2.04 42.09 16 10 H -0.26 -9.80 7.11 99.48 0.71 -9.10 16 11 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 12 H -0.28 -11.64 7.11 99.48 0.71 -10.93 16 13 C 0.47 25.10 7.29 86.71 0.63 25.73 16 14 O -0.63 -38.88 16.44 -4.09 -0.07 -38.94 16 15 C -0.08 -3.40 4.91 -20.07 -0.10 -3.50 16 16 C -0.13 -4.41 5.32 22.26 0.12 -4.29 16 17 C -0.05 -1.25 8.87 22.26 0.20 -1.06 16 18 C -0.16 -4.21 6.17 -21.32 -0.13 -4.35 16 19 C 0.08 1.68 12.04 85.73 1.03 2.72 16 20 N -0.27 -6.59 12.57 -56.29 -0.71 -7.30 16 21 N -0.51 -13.33 7.45 -51.57 -0.38 -13.72 16 22 H 0.45 9.54 8.96 -213.38 -1.91 7.63 16 23 C 0.10 3.11 7.32 39.11 0.29 3.40 16 24 C -0.10 -4.00 9.61 22.64 0.22 -3.78 16 25 H 0.25 4.75 7.80 -4.43 -0.03 4.72 16 26 H 0.10 3.76 6.33 -2.39 -0.02 3.74 16 27 H 0.09 3.81 7.11 -2.39 -0.02 3.79 16 28 H 0.28 13.27 8.31 -92.71 -0.77 12.50 16 29 H 0.16 5.44 2.84 -7.87 -0.02 5.42 16 30 H 0.17 2.76 8.06 -2.91 -0.02 2.73 16 31 H 0.24 2.31 8.06 -2.91 -0.02 2.29 16 32 H 0.11 4.52 7.80 -2.91 -0.02 4.50 16 Total: -1.00 -73.27 280.80 3.85 -69.43 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: -0.74 Total: 21.31 kcal Atomic # 6 Polarization: -9.78 SS G_CDS: 5.25 Total: -4.53 kcal Atomic # 7 Polarization: -86.72 SS G_CDS: -2.63 Total: -89.34 kcal Atomic # 8 Polarization: -38.88 SS G_CDS: -0.07 Total: -38.94 kcal Atomic # 14 Polarization: 40.05 SS G_CDS: 2.04 Total: 42.09 kcal Total: -73.27 3.85 -69.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310575628.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 224.080 kcal (2) G-P(sol) polarization free energy of solvation -73.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.654 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds