Wall clock time and date at job start Mon Mar 30 2020 04:42:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47085 * 281.59504 * 3 2 1 5 5 C 1.36897 * 120.00139 * 280.40390 * 4 3 2 6 6 H 1.08002 * 120.00124 * 290.01967 * 5 4 3 7 7 C 1.39019 * 120.00189 * 110.01625 * 5 4 3 8 8 N 1.31380 * 120.00336 * 62.53717 * 7 5 4 9 9 Si 1.86799 * 120.00270 * 242.53975 * 7 5 4 10 10 H 1.48506 * 109.47088 * 59.99502 * 9 7 5 11 11 H 1.48494 * 109.47465 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47444 * 299.99915 * 9 7 5 13 13 C 1.34775 * 119.99807 * 100.41173 * 4 3 2 14 14 O 1.21616 * 119.99902 * 191.83713 * 13 4 3 15 15 C 1.47571 * 120.00318 * 11.83485 * 13 4 3 16 16 C 1.40195 * 119.90842 * 320.42242 * 15 13 4 17 17 C 1.36410 * 120.45101 * 179.97438 * 16 15 13 18 18 C 1.39090 * 120.15619 * 0.04118 * 17 16 15 19 19 N 1.37803 * 133.86001 * 180.34631 * 18 17 16 20 20 H 0.97004 * 126.31032 * 359.94260 * 19 18 17 21 21 C 1.36090 * 107.38982 * 180.02562 * 19 18 17 22 22 N 1.30062 * 110.13190 * 359.58403 * 21 19 18 23 23 C 1.35872 * 109.56371 * 0.25709 * 22 21 19 24 24 C 1.39187 * 119.90852 * 140.40050 * 15 13 4 25 25 H 4.40632 * 5.51515 * 179.97438 * 4 1 2 26 26 H 1.09000 * 109.46511 * 161.59321 * 3 2 1 27 27 H 1.09002 * 109.47278 * 41.59857 * 3 2 1 28 28 H 0.96992 * 120.00445 * 180.02562 * 8 7 5 29 29 H 1.07998 * 119.77640 * 359.97438 * 16 15 13 30 30 H 1.08008 * 119.92552 * 180.02562 * 17 16 15 31 31 H 1.08004 * 124.93732 * 179.83959 * 21 19 18 32 32 H 1.07996 * 120.25337 * 0.04549 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.2767 1.3530 5 6 3.1603 0.7215 2.2895 6 1 3.8655 1.5338 2.1935 7 6 2.2787 0.6896 3.3639 8 7 2.3338 -0.2968 4.2299 9 14 1.0157 2.0494 3.5765 10 1 0.1290 2.0920 2.3860 11 1 0.2020 1.7840 4.7900 12 1 1.7117 3.3532 3.7221 13 6 3.5585 -1.5147 1.6757 14 8 3.7591 -1.8045 2.8397 15 6 3.7793 -2.5185 0.6168 16 6 2.8896 -2.6023 -0.4635 17 6 3.0835 -3.5256 -1.4487 18 6 4.1681 -4.3943 -1.3886 19 7 4.6291 -5.4040 -2.2053 20 1 4.2268 -5.6987 -3.0373 21 6 5.7518 -5.9129 -1.6286 22 7 6.0135 -5.2799 -0.5229 23 6 5.0713 -4.3239 -0.3121 24 6 4.8705 -3.3791 0.6930 25 1 -1.0499 0.0002 0.0002 26 1 3.0088 0.9759 -0.3245 27 1 3.0097 -0.7677 -0.6823 28 1 1.7185 -0.3193 4.9793 29 1 2.0450 -1.9313 -0.5160 30 1 2.3930 -3.5825 -2.2773 31 1 6.3424 -6.7219 -2.0326 32 1 5.5564 -3.3158 1.5249 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000310577320.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:17 Heat of formation + Delta-G solvation = 144.721813 kcal Electronic energy + Delta-G solvation = -19660.024186 eV Core-core repulsion = 16590.220118 eV Total energy + Delta-G solvation = -3069.804068 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.090 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.94644 -38.91410 -36.24203 -34.85068 -33.03401 -32.68252 -31.42348 -29.72927 -29.34817 -26.41368 -24.93843 -23.01074 -22.33905 -21.35685 -19.52458 -18.04748 -17.75572 -17.40795 -16.50755 -15.59073 -15.13037 -14.78641 -14.53620 -14.25053 -13.99313 -13.68222 -13.51846 -13.22791 -12.54059 -12.27488 -11.94508 -11.66629 -11.45041 -11.10105 -10.81895 -10.63010 -10.55346 -10.20949 -9.88060 -9.77581 -9.46602 -8.50494 -8.07976 -7.94449 -7.88043 -7.16576 -6.46225 -3.84247 1.18051 1.54648 2.90396 2.95656 3.26787 3.40575 3.43201 3.48218 3.50292 3.88517 4.24095 4.39609 4.55770 4.70469 4.76610 5.01345 5.17521 5.26766 5.45994 5.57645 5.63303 5.70389 6.00651 6.16083 6.31062 6.39244 6.54952 6.61587 6.68252 6.85252 7.04821 7.35904 7.54545 7.94207 8.29417 8.49672 9.06244 9.21480 9.52479 10.30281 10.48229 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.031688 B = 0.005695 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.411619 B = 4915.160445 C = 5546.804010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.164 4.164 3 C 0.181 3.819 4 N -0.446 5.446 5 C -0.448 4.448 6 H 0.083 0.917 7 C 0.140 3.860 8 N -0.701 5.701 9 Si 0.811 3.189 10 H -0.266 1.266 11 H -0.291 1.291 12 H -0.270 1.270 13 C 0.511 3.489 14 O -0.489 6.489 15 C -0.116 4.116 16 C -0.088 4.088 17 C -0.126 4.126 18 C 0.050 3.950 19 N -0.605 5.605 20 H 0.420 0.580 21 C 0.247 3.753 22 N -0.490 5.490 23 C 0.037 3.963 24 C -0.019 4.019 25 H 0.207 0.793 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.263 0.737 29 H 0.148 0.852 30 H 0.122 0.878 31 H 0.213 0.787 32 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.383 -8.348 -14.962 17.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.255 4.255 2 C -0.166 4.166 3 C 0.059 3.941 4 N -0.170 5.170 5 C -0.568 4.568 6 H 0.101 0.899 7 C -0.086 4.086 8 N -0.321 5.321 9 Si 0.632 3.368 10 H -0.191 1.191 11 H -0.217 1.217 12 H -0.195 1.195 13 C 0.298 3.702 14 O -0.363 6.363 15 C -0.123 4.123 16 C -0.107 4.107 17 C -0.147 4.147 18 C -0.060 4.060 19 N -0.217 5.217 20 H 0.258 0.742 21 C -0.040 4.040 22 N -0.209 5.209 23 C -0.080 4.080 24 C -0.039 4.039 25 H 0.224 0.776 26 H 0.102 0.898 27 H 0.116 0.884 28 H 0.074 0.926 29 H 0.166 0.834 30 H 0.140 0.860 31 H 0.229 0.771 32 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 1.242 -8.797 -13.476 16.141 hybrid contribution -2.035 0.661 -0.922 2.330 sum -0.794 -8.136 -14.399 16.557 Atomic orbital electron populations 1.24670 0.95741 1.02844 1.02195 1.24073 0.95294 0.98540 0.98660 1.19402 0.82922 1.02259 0.89546 1.42837 1.57347 1.07962 1.08888 1.18034 1.25350 1.05641 1.07734 0.89932 1.25634 0.95542 0.94149 0.93272 1.71099 1.25606 1.31102 1.04320 0.87856 0.84504 0.86695 0.77731 1.19074 1.21702 1.19485 1.18775 0.80326 0.83279 0.87831 1.90815 1.49813 1.77210 1.18449 1.20576 0.95951 0.98623 0.97106 1.21421 0.99761 0.96954 0.92560 1.19565 0.96909 0.96765 1.01459 1.19000 0.98998 0.94051 0.93908 1.43072 1.25118 1.30680 1.22865 0.74160 1.25271 0.88023 0.99595 0.91148 1.70443 1.26013 1.08624 1.15850 1.18933 0.93897 0.98661 0.96478 1.20333 0.96691 0.90877 0.96029 0.77630 0.89836 0.88386 0.92579 0.83433 0.86049 0.77055 0.84522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -4.32 19.25 29.55 0.57 -3.75 16 2 C -0.16 -3.28 11.87 -37.12 -0.44 -3.72 16 3 C 0.18 3.62 5.41 -6.83 -0.04 3.59 16 4 N -0.45 -11.21 2.52 -119.11 -0.30 -11.51 16 5 C -0.45 -12.47 8.47 -15.00 -0.13 -12.59 16 6 H 0.08 2.33 8.06 -52.49 -0.42 1.91 16 7 C 0.14 3.90 5.32 -17.46 -0.09 3.80 16 8 N -0.70 -20.52 11.58 55.50 0.64 -19.87 16 9 Si 0.81 19.74 29.69 -169.99 -5.05 14.69 16 10 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 11 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 12 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 13 C 0.51 13.11 7.19 -12.45 -0.09 13.02 16 14 O -0.49 -14.64 14.62 5.26 0.08 -14.56 16 15 C -0.12 -2.42 5.45 -105.00 -0.57 -2.99 16 16 C -0.09 -1.51 7.31 -39.51 -0.29 -1.80 16 17 C -0.13 -1.79 10.00 -39.92 -0.40 -2.19 16 18 C 0.05 0.73 7.30 -83.94 -0.61 0.12 16 19 N -0.61 -6.11 6.22 -11.71 -0.07 -6.18 16 20 H 0.42 2.46 8.96 -40.82 -0.37 2.09 16 21 C 0.25 2.63 12.97 -89.77 -1.16 1.47 16 22 N -0.49 -7.78 11.28 -12.06 -0.14 -7.91 16 23 C 0.04 0.65 7.22 -84.72 -0.61 0.04 16 24 C -0.02 -0.38 9.68 -38.80 -0.38 -0.75 16 25 H 0.21 2.98 7.80 -54.09 -0.42 2.56 16 26 H 0.08 1.56 8.12 -51.93 -0.42 1.14 16 27 H 0.10 1.70 3.99 -51.93 -0.21 1.49 16 28 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 29 H 0.15 2.52 4.16 -52.49 -0.22 2.31 16 30 H 0.12 1.31 8.06 -52.48 -0.42 0.89 16 31 H 0.21 1.11 8.06 -52.48 -0.42 0.68 16 32 H 0.14 2.82 8.05 -52.49 -0.42 2.39 16 LS Contribution 288.22 15.07 4.34 4.34 Total: -1.00 -36.08 288.22 -7.19 -43.27 By element: Atomic # 1 Polarization: 5.94 SS G_CDS: -2.46 Total: 3.48 kcal Atomic # 6 Polarization: -1.51 SS G_CDS: -4.24 Total: -5.75 kcal Atomic # 7 Polarization: -45.61 SS G_CDS: 0.13 Total: -45.48 kcal Atomic # 8 Polarization: -14.64 SS G_CDS: 0.08 Total: -14.56 kcal Atomic # 14 Polarization: 19.74 SS G_CDS: -5.05 Total: 14.69 kcal Total LS contribution 4.34 Total: 4.34 kcal Total: -36.08 -7.19 -43.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310577320.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 187.995 kcal (2) G-P(sol) polarization free energy of solvation -36.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 151.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.195 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.273 kcal (6) G-S(sol) free energy of system = (1) + (5) 144.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds