Wall clock time and date at job start Mon Mar 30 2020 04:42:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17397 * 1 3 3 C 1.47202 * 179.97438 * 2 1 4 4 N 1.46496 * 109.47085 * 281.59504 * 3 2 1 5 5 C 1.36897 * 120.00139 * 280.40390 * 4 3 2 6 6 H 1.08002 * 120.00124 * 290.01967 * 5 4 3 7 7 C 1.39019 * 120.00189 * 110.01625 * 5 4 3 8 8 N 1.31380 * 120.00336 * 62.53717 * 7 5 4 9 9 Si 1.86799 * 120.00270 * 242.53975 * 7 5 4 10 10 H 1.48506 * 109.47088 * 59.99502 * 9 7 5 11 11 H 1.48494 * 109.47465 * 179.97438 * 9 7 5 12 12 H 1.48502 * 109.47444 * 299.99915 * 9 7 5 13 13 C 1.34775 * 119.99807 * 100.41173 * 4 3 2 14 14 O 1.21616 * 119.99902 * 191.83713 * 13 4 3 15 15 C 1.47571 * 120.00318 * 11.83485 * 13 4 3 16 16 C 1.40195 * 119.90842 * 320.42242 * 15 13 4 17 17 C 1.36410 * 120.45101 * 179.97438 * 16 15 13 18 18 C 1.39090 * 120.15619 * 0.04118 * 17 16 15 19 19 N 1.37803 * 133.86001 * 180.34631 * 18 17 16 20 20 H 0.97004 * 126.31032 * 359.94260 * 19 18 17 21 21 C 1.36090 * 107.38982 * 180.02562 * 19 18 17 22 22 N 1.30062 * 110.13190 * 359.58403 * 21 19 18 23 23 C 1.35872 * 109.56371 * 0.25709 * 22 21 19 24 24 C 1.39187 * 119.90852 * 140.40050 * 15 13 4 25 25 H 4.40632 * 5.51515 * 179.97438 * 4 1 2 26 26 H 1.09000 * 109.46511 * 161.59321 * 3 2 1 27 27 H 1.09002 * 109.47278 * 41.59857 * 3 2 1 28 28 H 0.96992 * 120.00445 * 180.02562 * 8 7 5 29 29 H 1.07998 * 119.77640 * 359.97438 * 16 15 13 30 30 H 1.08008 * 119.92552 * 180.02562 * 17 16 15 31 31 H 1.08004 * 124.93732 * 179.83959 * 21 19 18 32 32 H 1.07996 * 120.25337 * 0.04549 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1344 -0.2767 1.3530 5 6 3.1603 0.7215 2.2895 6 1 3.8655 1.5338 2.1935 7 6 2.2787 0.6896 3.3639 8 7 2.3338 -0.2968 4.2299 9 14 1.0157 2.0494 3.5765 10 1 0.1290 2.0920 2.3860 11 1 0.2020 1.7840 4.7900 12 1 1.7117 3.3532 3.7221 13 6 3.5585 -1.5147 1.6757 14 8 3.7591 -1.8045 2.8397 15 6 3.7793 -2.5185 0.6168 16 6 2.8896 -2.6023 -0.4635 17 6 3.0835 -3.5256 -1.4487 18 6 4.1681 -4.3943 -1.3886 19 7 4.6291 -5.4040 -2.2053 20 1 4.2268 -5.6987 -3.0373 21 6 5.7518 -5.9129 -1.6286 22 7 6.0135 -5.2799 -0.5229 23 6 5.0713 -4.3239 -0.3121 24 6 4.8705 -3.3791 0.6930 25 1 -1.0499 0.0002 0.0002 26 1 3.0088 0.9759 -0.3245 27 1 3.0097 -0.7677 -0.6823 28 1 1.7185 -0.3193 4.9793 29 1 2.0450 -1.9313 -0.5160 30 1 2.3930 -3.5825 -2.2773 31 1 6.3424 -6.7219 -2.0326 32 1 5.5564 -3.3158 1.5249 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000310577320.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:42:16 Heat of formation + Delta-G solvation = 120.061739 kcal Electronic energy + Delta-G solvation = -19661.093527 eV Core-core repulsion = 16590.220118 eV Total energy + Delta-G solvation = -3070.873409 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.090 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -43.05682 -40.62213 -37.71356 -36.69267 -34.63347 -34.14771 -33.13364 -31.05650 -30.67117 -28.09087 -26.74189 -24.42771 -23.62173 -22.48559 -21.24441 -19.36974 -19.16442 -18.89409 -18.13050 -17.13377 -16.51059 -16.50120 -16.09107 -15.87235 -15.50938 -15.03579 -14.88581 -14.59012 -14.22234 -13.99987 -13.93205 -13.31859 -13.02211 -12.67460 -12.48521 -12.25929 -12.12798 -11.75564 -11.32265 -11.00451 -10.95652 -10.54392 -9.96287 -9.34767 -9.23989 -9.12500 -8.52348 -5.95996 -0.04092 0.19011 1.33659 1.44349 1.52616 1.83544 1.88579 2.00586 2.06852 2.32688 2.36629 2.61557 2.88550 3.19415 3.53400 3.70891 3.75690 4.08180 4.19724 4.32689 4.38721 4.52935 4.57066 4.73436 4.84497 5.00682 5.20985 5.27473 5.40722 5.45767 5.47818 5.77498 6.35993 6.56501 6.83132 6.92654 7.11125 7.15554 7.56136 8.32843 8.44467 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.031688 B = 0.005695 C = 0.005047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.411619 B = 4915.160445 C = 5546.804010 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.208 4.208 3 C 0.185 3.815 4 N -0.456 5.456 5 C -0.479 4.479 6 H 0.066 0.934 7 C 0.100 3.900 8 N -0.750 5.750 9 Si 0.892 3.108 10 H -0.257 1.257 11 H -0.287 1.287 12 H -0.264 1.264 13 C 0.496 3.504 14 O -0.555 6.555 15 C -0.134 4.134 16 C -0.102 4.102 17 C -0.094 4.094 18 C 0.055 3.945 19 N -0.581 5.581 20 H 0.447 0.553 21 C 0.284 3.716 22 N -0.547 5.547 23 C 0.019 3.981 24 C -0.045 4.045 25 H 0.244 0.756 26 H 0.091 0.909 27 H 0.126 0.874 28 H 0.266 0.734 29 H 0.151 0.849 30 H 0.171 0.829 31 H 0.272 0.728 32 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.460 -9.656 -19.049 21.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.209 4.209 3 C 0.063 3.937 4 N -0.179 5.179 5 C -0.600 4.600 6 H 0.084 0.916 7 C -0.124 4.124 8 N -0.372 5.372 9 Si 0.713 3.287 10 H -0.181 1.181 11 H -0.213 1.213 12 H -0.188 1.188 13 C 0.285 3.715 14 O -0.433 6.433 15 C -0.140 4.140 16 C -0.122 4.122 17 C -0.114 4.114 18 C -0.057 4.057 19 N -0.194 5.194 20 H 0.290 0.710 21 C -0.003 4.003 22 N -0.268 5.268 23 C -0.098 4.098 24 C -0.066 4.066 25 H 0.260 0.740 26 H 0.109 0.891 27 H 0.143 0.857 28 H 0.077 0.923 29 H 0.168 0.832 30 H 0.189 0.811 31 H 0.288 0.712 32 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.636 -10.081 -17.646 20.332 hybrid contribution -1.326 0.877 0.202 1.603 sum -1.962 -9.204 -17.444 19.820 Atomic orbital electron populations 1.25557 0.96621 1.00900 0.99741 1.24103 0.95686 1.00428 1.00730 1.19438 0.83768 1.03635 0.86847 1.43104 1.57189 1.07204 1.10381 1.18146 1.26667 1.05752 1.09398 0.91628 1.26377 0.96963 0.96435 0.92584 1.71183 1.26702 1.34216 1.05128 0.86622 0.81371 0.82946 0.77788 1.18125 1.21316 1.18839 1.19551 0.79074 0.84568 0.88311 1.90746 1.52509 1.78795 1.21300 1.20112 0.97946 0.98483 0.97445 1.21323 0.99404 0.98905 0.92585 1.19914 0.96525 0.94027 1.00942 1.19041 0.98262 0.94846 0.93591 1.43047 1.24515 1.28775 1.23089 0.70984 1.26440 0.86940 0.98243 0.88688 1.70436 1.27218 1.10000 1.19104 1.18937 0.95494 0.98639 0.96743 1.20108 0.96825 0.92893 0.96737 0.73978 0.89092 0.85694 0.92329 0.83165 0.81115 0.71237 0.87811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -7.11 19.25 74.32 1.43 -5.68 16 2 C -0.21 -8.09 11.87 31.13 0.37 -7.72 16 3 C 0.18 7.48 5.41 84.57 0.46 7.93 16 4 N -0.46 -24.11 2.52 -649.00 -1.64 -25.74 16 5 C -0.48 -28.11 8.47 84.09 0.71 -27.40 16 6 H 0.07 3.96 8.06 -2.91 -0.02 3.94 16 7 C 0.10 5.76 5.32 84.95 0.45 6.22 16 8 N -0.75 -46.38 11.58 21.68 0.25 -46.13 16 9 Si 0.89 42.06 29.69 68.60 2.04 44.10 16 10 H -0.26 -11.65 7.11 99.48 0.71 -10.95 16 11 H -0.29 -13.23 7.11 99.48 0.71 -12.53 16 12 H -0.26 -12.08 7.11 99.48 0.71 -11.38 16 13 C 0.50 27.39 7.19 86.71 0.62 28.01 16 14 O -0.55 -36.33 14.62 -4.08 -0.06 -36.39 16 15 C -0.13 -5.88 5.45 -20.11 -0.11 -5.99 16 16 C -0.10 -3.45 7.31 22.32 0.16 -3.29 16 17 C -0.09 -2.33 10.00 22.05 0.22 -2.10 16 18 C 0.05 1.41 7.30 39.01 0.28 1.70 16 19 N -0.58 -8.63 6.22 -190.95 -1.19 -9.81 16 20 H 0.45 2.22 8.96 -92.71 -0.83 1.39 16 21 C 0.28 4.72 12.97 180.05 2.33 7.05 16 22 N -0.55 -16.55 11.28 -192.07 -2.17 -18.72 16 23 C 0.02 0.65 7.22 39.40 0.28 0.94 16 24 C -0.04 -1.92 9.68 22.78 0.22 -1.70 16 25 H 0.24 5.95 7.80 -4.42 -0.03 5.91 16 26 H 0.09 3.44 8.12 -2.39 -0.02 3.43 16 27 H 0.13 4.32 3.99 -2.39 -0.01 4.31 16 28 H 0.27 15.18 8.31 -92.71 -0.77 14.41 16 29 H 0.15 4.97 4.16 -2.91 -0.01 4.96 16 30 H 0.17 2.59 8.06 -2.91 -0.02 2.57 16 31 H 0.27 0.97 8.06 -2.91 -0.02 0.95 16 32 H 0.10 4.91 8.05 -2.91 -0.02 4.88 16 Total: -1.00 -87.87 288.22 5.03 -82.84 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: 0.35 Total: 11.89 kcal Atomic # 6 Polarization: -9.47 SS G_CDS: 7.44 Total: -2.03 kcal Atomic # 7 Polarization: -95.66 SS G_CDS: -4.74 Total: -100.40 kcal Atomic # 8 Polarization: -36.33 SS G_CDS: -0.06 Total: -36.39 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 2.04 Total: 44.10 kcal Total: -87.87 5.03 -82.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000310577320.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 202.900 kcal (2) G-P(sol) polarization free energy of solvation -87.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.838 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds