Wall clock time and date at job start Mon Mar 30 2020 04:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81000 * 1 3 3 C 1.76201 * 100.00114 * 2 1 4 4 C 1.39096 * 126.44328 * 94.99795 * 3 2 1 5 5 C 1.47202 * 126.47688 * 0.02562 * 4 3 2 6 6 O 1.35295 * 120.00325 * 179.97438 * 5 4 3 7 7 N 1.30422 * 119.99983 * 0.02562 * 5 4 3 8 8 C 1.46504 * 119.99941 * 179.97438 * 7 5 4 9 9 H 1.08995 * 109.47301 * 0.02562 * 8 7 5 10 10 C 1.53000 * 109.46852 * 120.00209 * 8 7 5 11 11 C 1.50692 * 109.47155 * 240.00010 * 8 7 5 12 12 H 1.07997 * 120.00529 * 0.02562 * 11 8 7 13 13 C 1.37879 * 120.00241 * 180.02562 * 11 8 7 14 14 N 1.31512 * 120.00521 * 180.02562 * 13 11 8 15 15 Si 1.86796 * 119.99691 * 0.02562 * 13 11 8 16 16 H 1.48502 * 109.47605 * 89.99679 * 15 13 11 17 17 H 1.48503 * 109.47287 * 209.99794 * 15 13 11 18 18 H 1.48503 * 109.47180 * 329.99841 * 15 13 11 19 19 C 1.41272 * 107.04960 * 180.28108 * 4 3 2 20 20 N 1.30392 * 108.24199 * 359.55544 * 19 4 3 21 21 N 1.35054 * 126.43507 * 275.02007 * 3 2 1 22 22 C 1.46500 * 125.79537 * 359.96276 * 21 3 2 23 23 H 1.09006 * 109.46590 * 60.00244 * 1 2 3 24 24 H 1.08996 * 109.47191 * 179.97438 * 1 2 3 25 25 H 1.09003 * 109.47343 * 300.00846 * 1 2 3 26 26 H 0.96705 * 113.99646 * 0.02562 * 6 5 4 27 27 H 1.08998 * 109.47339 * 300.00186 * 10 8 7 28 28 H 1.09005 * 109.47048 * 59.99882 * 10 8 7 29 29 H 1.08998 * 109.47223 * 180.02562 * 10 8 7 30 30 H 0.97001 * 120.00266 * 180.02562 * 14 13 11 31 31 H 1.07997 * 125.88255 * 179.69625 * 19 4 3 32 32 H 1.08994 * 109.47438 * 89.99772 * 22 21 3 33 33 H 1.09004 * 109.47202 * 209.99645 * 22 21 3 34 34 H 1.08997 * 109.46645 * 329.99432 * 22 21 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 6 2.3555 2.5320 1.1147 5 6 2.4017 2.0849 2.5164 6 8 2.6471 2.9771 3.5034 7 7 2.2069 0.8284 2.8068 8 6 2.2534 0.3833 4.2018 9 1 2.4605 1.2358 4.8485 10 6 0.9064 -0.2323 4.5858 11 6 3.3411 -0.6470 4.3644 12 1 3.9383 -0.9406 3.5138 13 6 3.5738 -1.2149 5.5990 14 7 4.5233 -2.1137 5.7410 15 14 2.5404 -0.7077 7.0701 16 1 1.3490 -1.5889 7.1657 17 1 3.3488 -0.8321 8.3095 18 1 2.1017 0.7014 6.9046 19 6 2.5402 3.8526 0.6480 20 7 2.4296 3.8455 -0.6512 21 7 2.1617 2.5417 -1.0824 22 6 1.9646 2.1224 -2.4722 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3634 0.5140 0.8899 26 1 2.7786 3.8828 3.1911 27 1 0.1196 0.5129 4.4682 28 1 0.6989 -1.0848 3.9391 29 1 0.9408 -0.5630 5.6239 30 1 4.6868 -2.5135 6.6096 31 1 2.7409 4.7185 1.2614 32 1 0.9074 2.1956 -2.7274 33 1 2.5432 2.7687 -3.1322 34 1 2.2965 1.0910 -2.5910 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331074329.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:54 Heat of formation + Delta-G solvation = 68.098413 kcal Electronic energy + Delta-G solvation = -18524.788978 eV Core-core repulsion = 15587.106222 eV Total energy + Delta-G solvation = -2937.682756 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.13756 -38.02648 -34.69920 -33.46205 -32.22819 -30.87725 -29.13180 -28.67303 -27.10448 -24.91304 -23.08554 -21.43372 -20.58470 -19.43222 -18.29704 -16.54485 -16.23847 -15.76314 -15.45843 -15.07756 -14.41301 -14.25864 -13.75745 -13.63748 -13.29934 -12.97442 -12.84352 -12.80993 -12.47358 -12.26113 -12.13344 -11.55185 -11.26561 -10.97357 -10.66107 -10.53565 -10.24678 -9.52674 -9.43833 -9.40248 -9.07652 -8.57489 -8.37950 -7.63764 -7.19266 -5.95684 -3.92484 1.12667 1.62666 2.19930 2.41285 2.77922 3.34143 3.44854 3.48272 3.75187 4.23144 4.50085 4.57628 4.72851 4.91353 4.93795 5.11095 5.23372 5.26007 5.28739 5.37591 5.63767 5.81324 6.10660 6.31400 6.46021 6.56678 6.67843 6.83228 7.05290 7.43021 7.48714 7.81772 8.21930 8.53235 9.00545 9.15661 9.66768 11.17620 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.026659 B = 0.005919 C = 0.005415 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1050.056892 B = 4729.052342 C = 5169.136196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 S -0.010 6.010 3 C 0.083 3.917 4 C -0.166 4.166 5 C 0.346 3.654 6 O -0.506 6.506 7 N -0.451 5.451 8 C 0.165 3.835 9 H 0.022 0.978 10 C -0.135 4.135 11 C -0.492 4.492 12 H 0.080 0.920 13 C 0.069 3.931 14 N -0.902 5.902 15 Si 0.885 3.115 16 H -0.279 1.279 17 H -0.297 1.297 18 H -0.267 1.267 19 C 0.055 3.945 20 N -0.282 5.282 21 N -0.347 5.347 22 C 0.093 3.907 23 H 0.068 0.932 24 H 0.107 0.893 25 H 0.085 0.915 26 H 0.380 0.620 27 H 0.024 0.976 28 H 0.059 0.941 29 H 0.042 0.958 30 H 0.263 0.737 31 H 0.192 0.808 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.517 10.060 -14.953 19.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.317 4.317 2 S 0.217 5.783 3 C -0.158 4.158 4 C -0.182 4.182 5 C 0.118 3.882 6 O -0.300 6.300 7 N -0.183 5.183 8 C 0.056 3.944 9 H 0.040 0.960 10 C -0.192 4.192 11 C -0.530 4.530 12 H 0.098 0.902 13 C -0.132 4.132 14 N -0.541 5.541 15 Si 0.715 3.285 16 H -0.206 1.206 17 H -0.225 1.225 18 H -0.192 1.192 19 C -0.133 4.133 20 N -0.104 5.104 21 N -0.130 5.130 22 C -0.048 4.048 23 H 0.087 0.913 24 H 0.125 0.875 25 H 0.104 0.896 26 H 0.230 0.770 27 H 0.043 0.957 28 H 0.078 0.922 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.208 0.792 32 H 0.095 0.905 33 H 0.111 0.889 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -7.903 8.421 -15.891 19.644 hybrid contribution -1.068 1.920 1.924 2.920 sum -8.970 10.341 -13.967 19.557 Atomic orbital electron populations 1.23582 0.96349 1.06806 1.04983 1.86059 1.04682 0.91969 1.95572 1.23517 1.05840 0.98099 0.88352 1.19444 1.14293 0.92502 0.91965 1.21110 0.96130 0.86905 0.84087 1.85164 1.88243 1.21221 1.35385 1.73228 1.15289 1.06381 1.23419 1.19652 0.94166 0.95833 0.84790 0.96011 1.22051 0.97193 1.00138 0.99862 1.20863 1.15141 1.20604 0.96421 0.90231 1.24890 0.95231 0.94776 0.98315 1.69881 1.31882 1.28211 1.24162 0.86896 0.79652 0.79685 0.82226 1.20618 1.22518 1.19211 1.23897 1.00278 0.96970 0.92149 1.76964 1.21998 0.98310 1.13133 1.48856 1.52657 1.04936 1.06590 1.21990 1.03031 1.02602 0.77222 0.91287 0.87450 0.89623 0.76963 0.95724 0.92185 0.93944 0.92743 0.79167 0.90529 0.88875 0.88245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 10.50 101.05 1.06 -0.68 16 2 S -0.01 -0.16 20.45 -107.50 -2.20 -2.36 16 3 C 0.08 1.27 6.69 -15.82 -0.11 1.17 16 4 C -0.17 -2.69 6.15 -104.79 -0.64 -3.34 16 5 C 0.35 6.77 7.97 -14.51 -0.12 6.65 16 6 O -0.51 -9.12 12.01 -17.58 -0.21 -9.33 16 7 N -0.45 -10.36 8.29 -54.03 -0.45 -10.81 16 8 C 0.16 4.28 2.50 -69.08 -0.17 4.11 16 9 H 0.02 0.60 5.79 -51.93 -0.30 0.30 16 10 C -0.13 -3.19 8.99 37.16 0.33 -2.85 16 11 C -0.49 -14.80 9.42 -34.44 -0.32 -15.12 16 12 H 0.08 2.64 8.06 -52.49 -0.42 2.21 16 13 C 0.07 2.08 5.45 -17.82 -0.10 1.98 16 14 N -0.90 -28.62 13.96 55.43 0.77 -27.85 16 15 Si 0.88 22.96 24.37 -169.99 -4.14 18.81 16 16 H -0.28 -6.97 6.87 56.52 0.39 -6.59 16 17 H -0.30 -7.66 7.11 56.52 0.40 -7.25 16 18 H -0.27 -6.77 6.53 56.52 0.37 -6.40 16 19 C 0.05 0.71 11.37 -17.01 -0.19 0.51 16 20 N -0.28 -3.83 12.48 30.85 0.38 -3.45 16 21 N -0.35 -4.52 4.00 -66.21 -0.27 -4.79 16 22 C 0.09 0.78 11.25 59.85 0.67 1.45 16 23 H 0.07 0.65 8.14 -51.91 -0.42 0.22 16 24 H 0.11 1.10 8.14 -51.92 -0.42 0.68 16 25 H 0.08 1.13 8.14 -51.91 -0.42 0.71 16 26 H 0.38 4.29 7.56 45.56 0.34 4.64 16 27 H 0.02 0.51 8.14 -51.93 -0.42 0.08 16 28 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 29 H 0.04 1.02 3.27 -51.93 -0.17 0.86 16 30 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 31 H 0.19 1.60 7.37 -52.49 -0.39 1.21 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 34 H 0.10 0.74 7.69 -51.93 -0.40 0.34 16 LS Contribution 301.40 15.07 4.54 4.54 Total: -1.00 -37.01 301.40 -4.62 -41.63 By element: Atomic # 1 Polarization: 3.19 SS G_CDS: -3.47 Total: -0.28 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 0.42 Total: -6.12 kcal Atomic # 7 Polarization: -47.34 SS G_CDS: 0.45 Total: -46.90 kcal Atomic # 8 Polarization: -9.12 SS G_CDS: -0.21 Total: -9.33 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.14 Total: 18.81 kcal Atomic # 16 Polarization: -0.16 SS G_CDS: -2.20 Total: -2.36 kcal Total LS contribution 4.54 Total: 4.54 kcal Total: -37.01 -4.62 -41.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331074329.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.733 kcal (2) G-P(sol) polarization free energy of solvation -37.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.635 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds