Wall clock time and date at job start Mon Mar 30 2020 04:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81003 * 1 3 3 C 1.76201 * 99.99853 * 2 1 4 4 C 1.39401 * 126.46083 * 95.00214 * 3 2 1 5 5 C 1.46724 * 126.52106 * 359.97438 * 4 3 2 6 6 O 1.21691 * 120.00011 * 326.46073 * 5 4 3 7 7 N 1.34779 * 119.99850 * 146.46961 * 5 4 3 8 8 C 1.46499 * 120.00287 * 4.34381 * 7 5 4 9 9 C 1.46498 * 119.99979 * 184.34965 * 7 5 4 10 10 C 1.50700 * 109.47635 * 89.99540 * 9 7 5 11 11 H 1.08002 * 119.99303 * 359.97438 * 10 9 7 12 12 C 1.37874 * 120.00087 * 180.02562 * 10 9 7 13 13 N 1.31513 * 120.00278 * 359.97438 * 12 10 9 14 14 Si 1.86808 * 119.99579 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47187 * 59.99966 * 14 12 10 16 16 H 1.48503 * 109.46620 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47114 * 299.99313 * 14 12 10 18 18 C 1.41476 * 106.95698 * 179.71411 * 4 3 2 19 19 N 1.30282 * 108.21535 * 0.26336 * 18 4 3 20 20 N 1.34958 * 126.46409 * 275.16707 * 3 2 1 21 21 C 1.46499 * 125.75546 * 359.97438 * 20 3 2 22 22 H 1.09003 * 109.47269 * 299.99795 * 1 2 3 23 23 H 1.08996 * 109.47017 * 60.00000 * 1 2 3 24 24 H 1.09003 * 109.47242 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46944 * 95.63055 * 8 7 5 26 26 H 1.08997 * 109.46990 * 215.63592 * 8 7 5 27 27 H 1.09000 * 109.46737 * 335.63355 * 8 7 5 28 28 H 1.08999 * 109.47083 * 209.99570 * 9 7 5 29 29 H 1.09007 * 109.47034 * 329.99532 * 9 7 5 30 30 H 0.96995 * 119.99919 * 180.02562 * 13 12 10 31 31 H 1.07990 * 125.89435 * 180.24118 * 18 4 3 32 32 H 1.08999 * 109.47568 * 270.32194 * 21 20 3 33 33 H 1.08999 * 109.47152 * 30.32244 * 21 20 3 34 34 H 1.09003 * 109.47211 * 150.31793 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 6 2.3561 2.5341 1.1169 5 6 2.4015 2.0901 2.5146 6 8 1.6809 1.1836 2.8887 7 7 3.2411 2.6863 3.3841 8 6 4.0388 3.8391 2.9589 9 6 3.3561 2.1814 4.7545 10 6 4.4391 1.1353 4.8154 11 1 4.9867 0.8725 3.9223 12 6 4.7302 0.5130 6.0108 13 7 4.0631 0.8328 7.0981 14 14 6.0732 -0.7832 6.0861 15 1 7.3658 -0.1816 5.6708 16 1 6.1897 -1.2950 7.4753 17 1 5.7321 -1.9032 5.1726 18 6 2.5537 3.8534 0.6458 19 7 2.4348 3.8446 -0.6516 20 7 2.1590 2.5421 -1.0810 21 6 1.9581 2.1233 -2.4704 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 3.5262 4.7591 3.2399 26 1 5.0146 3.8042 3.4432 27 1 4.1689 3.8116 1.8770 28 1 3.6071 3.0036 5.4247 29 1 2.4073 1.7403 5.0601 30 1 4.2682 0.3952 7.9391 31 1 2.7660 4.7185 1.2562 32 1 2.9154 1.8366 -2.9055 33 1 1.2769 1.2728 -2.4986 34 1 1.5323 2.9488 -3.0408 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331087218.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:14 Heat of formation + Delta-G solvation = 59.797356 kcal Electronic energy + Delta-G solvation = -18551.032117 eV Core-core repulsion = 15612.989400 eV Total energy + Delta-G solvation = -2938.042717 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.20128 -38.38649 -34.73986 -33.54345 -32.44706 -30.38231 -28.87396 -28.23680 -26.69931 -25.83633 -23.38276 -21.55950 -21.27676 -19.12835 -17.24996 -16.44347 -16.28900 -15.81208 -15.27893 -14.92126 -14.39414 -14.20750 -14.10531 -13.78894 -13.40764 -12.99307 -12.86935 -12.63833 -12.53265 -12.16627 -12.03274 -11.50928 -11.16031 -11.07085 -10.84570 -10.69197 -10.49648 -10.08620 -9.58453 -9.41056 -8.95017 -8.48715 -8.35998 -7.70967 -7.49859 -5.97494 -4.01711 1.10002 1.51545 2.31634 2.41587 2.65736 3.37362 3.41049 3.44847 3.77393 4.18901 4.43037 4.53581 4.91807 4.96504 5.05362 5.16365 5.21960 5.28426 5.35897 5.36962 5.65285 5.74702 5.77880 5.97093 6.30241 6.38975 6.57797 7.15540 7.46581 7.52664 7.63079 7.99672 8.31061 8.50582 8.97781 9.19625 9.63158 11.10473 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.023256 B = 0.005767 C = 0.005198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.686721 B = 4853.788972 C = 5385.249401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 S -0.044 6.044 3 C 0.084 3.916 4 C -0.216 4.216 5 C 0.577 3.423 6 O -0.528 6.528 7 N -0.595 5.595 8 C 0.073 3.927 9 C 0.247 3.753 10 C -0.524 4.524 11 H 0.057 0.943 12 C 0.062 3.938 13 N -0.896 5.896 14 Si 0.897 3.103 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.067 3.933 19 N -0.286 5.286 20 N -0.346 5.346 21 C 0.096 3.904 22 H 0.092 0.908 23 H 0.072 0.928 24 H 0.107 0.893 25 H 0.046 0.954 26 H 0.071 0.929 27 H 0.066 0.934 28 H 0.033 0.967 29 H 0.046 0.954 30 H 0.263 0.737 31 H 0.199 0.801 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.977 4.008 -17.677 18.796 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.313 4.313 2 S 0.183 5.817 3 C -0.156 4.156 4 C -0.234 4.234 5 C 0.363 3.637 6 O -0.405 6.405 7 N -0.326 5.326 8 C -0.072 4.072 9 C 0.128 3.872 10 C -0.563 4.563 11 H 0.075 0.925 12 C -0.140 4.140 13 N -0.535 5.535 14 Si 0.724 3.276 15 H -0.203 1.203 16 H -0.212 1.212 17 H -0.201 1.201 18 C -0.119 4.119 19 N -0.109 5.109 20 N -0.129 5.129 21 C -0.046 4.046 22 H 0.111 0.889 23 H 0.091 0.909 24 H 0.126 0.874 25 H 0.065 0.935 26 H 0.090 0.910 27 H 0.084 0.916 28 H 0.051 0.949 29 H 0.064 0.936 30 H 0.073 0.927 31 H 0.215 0.785 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -4.641 3.245 -18.458 19.307 hybrid contribution 0.088 0.017 0.792 0.797 sum -4.554 3.263 -17.666 18.532 Atomic orbital electron populations 1.23620 0.95102 1.06913 1.05710 1.85770 1.06403 0.93382 1.96127 1.23405 1.05921 0.97445 0.88787 1.20945 1.14158 0.93219 0.95111 1.16918 0.81164 0.82545 0.83107 1.90768 1.42167 1.29474 1.78122 1.47940 1.39991 1.30482 1.14233 1.21986 0.96726 0.88336 1.00121 1.19288 0.98431 0.94392 0.75048 1.21416 1.18577 1.21493 0.94836 0.92489 1.24910 0.96664 0.96936 0.95484 1.69922 1.41001 1.42873 0.99721 0.86583 0.81981 0.82041 0.76975 1.20315 1.21221 1.20117 1.24375 0.98300 0.97680 0.91588 1.76961 1.22390 0.97748 1.13763 1.48855 1.52488 1.05077 1.06446 1.21958 1.03536 1.01803 0.77258 0.88866 0.90928 0.87417 0.93511 0.90988 0.91573 0.94946 0.93561 0.92736 0.78464 0.89998 0.89049 0.88920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.71 10.50 101.05 1.06 -0.65 16 2 S -0.04 -0.67 21.28 -107.50 -2.29 -2.96 16 3 C 0.08 1.38 6.68 -15.74 -0.11 1.28 16 4 C -0.22 -3.95 5.53 -104.80 -0.58 -4.53 16 5 C 0.58 12.88 7.50 -12.83 -0.10 12.78 16 6 O -0.53 -13.54 15.81 5.20 0.08 -13.46 16 7 N -0.59 -13.21 2.86 -184.50 -0.53 -13.74 16 8 C 0.07 1.22 9.10 59.85 0.54 1.76 16 9 C 0.25 6.60 5.22 -5.19 -0.03 6.57 16 10 C -0.52 -15.16 9.39 -34.44 -0.32 -15.48 16 11 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 12 C 0.06 1.79 5.46 -17.82 -0.10 1.69 16 13 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 14 Si 0.90 22.21 29.54 -169.99 -5.02 17.19 16 15 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 16 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 C 0.07 1.01 9.55 -16.98 -0.16 0.85 16 19 N -0.29 -4.23 12.47 30.87 0.38 -3.84 16 20 N -0.35 -4.77 4.00 -66.15 -0.26 -5.04 16 21 C 0.10 0.83 11.25 59.85 0.67 1.50 16 22 H 0.09 1.31 8.14 -51.91 -0.42 0.89 16 23 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 24 H 0.11 1.05 8.14 -51.91 -0.42 0.63 16 25 H 0.05 0.65 7.87 -51.93 -0.41 0.24 16 26 H 0.07 1.23 8.11 -51.93 -0.42 0.81 16 27 H 0.07 0.99 4.74 -51.93 -0.25 0.74 16 28 H 0.03 0.87 8.07 -51.93 -0.42 0.45 16 29 H 0.05 1.38 7.36 -51.92 -0.38 1.00 16 30 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 31 H 0.20 2.40 6.20 -52.49 -0.33 2.07 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.64 7.69 -51.93 -0.40 0.24 16 34 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 307.63 15.07 4.64 4.64 Total: -1.00 -35.16 307.63 -5.63 -40.79 By element: Atomic # 1 Polarization: 1.06 SS G_CDS: -4.26 Total: -3.20 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 0.89 Total: 5.77 kcal Atomic # 7 Polarization: -49.10 SS G_CDS: 0.33 Total: -48.77 kcal Atomic # 8 Polarization: -13.54 SS G_CDS: 0.08 Total: -13.46 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -5.02 Total: 17.19 kcal Atomic # 16 Polarization: -0.67 SS G_CDS: -2.29 Total: -2.96 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -35.16 -5.63 -40.79 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331087218.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.587 kcal (2) G-P(sol) polarization free energy of solvation -35.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.797 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds