Wall clock time and date at job start Mon Mar 30 2020 04:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81003 * 1 3 3 C 1.76201 * 99.99853 * 2 1 4 4 C 1.39401 * 126.46083 * 95.00214 * 3 2 1 5 5 C 1.46724 * 126.52106 * 359.97438 * 4 3 2 6 6 O 1.21691 * 120.00011 * 326.46073 * 5 4 3 7 7 N 1.34779 * 119.99850 * 146.46961 * 5 4 3 8 8 C 1.46499 * 120.00287 * 4.34381 * 7 5 4 9 9 C 1.46498 * 119.99979 * 184.34965 * 7 5 4 10 10 C 1.50700 * 109.47635 * 89.99540 * 9 7 5 11 11 H 1.08002 * 119.99303 * 359.97438 * 10 9 7 12 12 C 1.37874 * 120.00087 * 180.02562 * 10 9 7 13 13 N 1.31513 * 120.00278 * 359.97438 * 12 10 9 14 14 Si 1.86808 * 119.99579 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47187 * 59.99966 * 14 12 10 16 16 H 1.48503 * 109.46620 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.47114 * 299.99313 * 14 12 10 18 18 C 1.41476 * 106.95698 * 179.71411 * 4 3 2 19 19 N 1.30282 * 108.21535 * 0.26336 * 18 4 3 20 20 N 1.34958 * 126.46409 * 275.16707 * 3 2 1 21 21 C 1.46499 * 125.75546 * 359.97438 * 20 3 2 22 22 H 1.09003 * 109.47269 * 299.99795 * 1 2 3 23 23 H 1.08996 * 109.47017 * 60.00000 * 1 2 3 24 24 H 1.09003 * 109.47242 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.46944 * 95.63055 * 8 7 5 26 26 H 1.08997 * 109.46990 * 215.63592 * 8 7 5 27 27 H 1.09000 * 109.46737 * 335.63355 * 8 7 5 28 28 H 1.08999 * 109.47083 * 209.99570 * 9 7 5 29 29 H 1.09007 * 109.47034 * 329.99532 * 9 7 5 30 30 H 0.96995 * 119.99919 * 180.02562 * 13 12 10 31 31 H 1.07990 * 125.89435 * 180.24118 * 18 4 3 32 32 H 1.08999 * 109.47568 * 270.32194 * 21 20 3 33 33 H 1.08999 * 109.47152 * 30.32244 * 21 20 3 34 34 H 1.09003 * 109.47211 * 150.31793 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1160 1.7352 0.0000 4 6 2.3561 2.5341 1.1169 5 6 2.4015 2.0901 2.5146 6 8 1.6809 1.1836 2.8887 7 7 3.2411 2.6863 3.3841 8 6 4.0388 3.8391 2.9589 9 6 3.3561 2.1814 4.7545 10 6 4.4391 1.1353 4.8154 11 1 4.9867 0.8725 3.9223 12 6 4.7302 0.5130 6.0108 13 7 4.0631 0.8328 7.0981 14 14 6.0732 -0.7832 6.0861 15 1 7.3658 -0.1816 5.6708 16 1 6.1897 -1.2950 7.4753 17 1 5.7321 -1.9032 5.1726 18 6 2.5537 3.8534 0.6458 19 7 2.4348 3.8446 -0.6516 20 7 2.1590 2.5421 -1.0810 21 6 1.9581 2.1233 -2.4704 22 1 -0.3634 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 -0.3634 -1.0277 -0.0005 25 1 3.5262 4.7591 3.2399 26 1 5.0146 3.8042 3.4432 27 1 4.1689 3.8116 1.8770 28 1 3.6071 3.0036 5.4247 29 1 2.4073 1.7403 5.0601 30 1 4.2682 0.3952 7.9391 31 1 2.7660 4.7185 1.2562 32 1 2.9154 1.8366 -2.9055 33 1 1.2769 1.2728 -2.4986 34 1 1.5323 2.9488 -3.0408 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331087218.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:13 Heat of formation + Delta-G solvation = 35.085698 kcal Electronic energy + Delta-G solvation = -18552.103695 eV Core-core repulsion = 15612.989400 eV Total energy + Delta-G solvation = -2939.114295 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -42.41064 -40.07103 -36.54068 -34.93598 -34.26747 -31.68652 -30.02475 -29.78755 -27.91357 -27.45420 -25.22749 -23.07125 -22.41333 -20.61313 -18.67835 -18.54165 -17.69034 -17.08294 -16.91979 -16.25862 -16.08165 -15.76698 -15.42061 -14.82565 -14.53605 -14.40209 -14.18407 -13.76781 -13.70727 -13.56630 -13.46632 -13.30903 -12.98947 -12.68147 -12.48643 -12.33095 -12.14552 -11.83722 -11.69928 -10.69178 -10.60508 -10.49437 -9.77022 -9.35037 -8.85022 -8.18333 -6.32817 -0.08017 0.30549 1.10285 1.34197 1.38673 1.42853 1.50280 1.58889 2.15906 2.43284 2.60260 3.10822 3.40454 3.90833 3.92822 4.18250 4.24401 4.32589 4.35889 4.40065 4.43150 4.60645 4.69582 4.82083 4.94932 5.06312 5.21294 5.30229 5.54000 5.60132 5.88517 6.10801 6.30829 6.73581 6.80899 7.31597 7.51437 8.88264 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.023256 B = 0.005767 C = 0.005198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1203.686721 B = 4853.788972 C = 5385.249401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 S -0.080 6.080 3 C 0.089 3.911 4 C -0.255 4.255 5 C 0.573 3.427 6 O -0.577 6.577 7 N -0.603 5.603 8 C 0.069 3.931 9 C 0.263 3.737 10 C -0.542 4.542 11 H 0.049 0.951 12 C 0.011 3.989 13 N -0.927 5.927 14 Si 0.964 3.036 15 H -0.262 1.262 16 H -0.276 1.276 17 H -0.278 1.278 18 C 0.077 3.923 19 N -0.288 5.288 20 N -0.332 5.332 21 C 0.081 3.919 22 H 0.067 0.933 23 H 0.103 0.897 24 H 0.130 0.870 25 H 0.080 0.920 26 H 0.065 0.935 27 H 0.088 0.912 28 H 0.027 0.973 29 H 0.003 0.997 30 H 0.267 0.733 31 H 0.224 0.776 32 H 0.098 0.902 33 H 0.109 0.891 34 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.398 4.389 -19.942 20.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.299 4.299 2 S 0.146 5.854 3 C -0.154 4.154 4 C -0.274 4.274 5 C 0.361 3.639 6 O -0.458 6.458 7 N -0.334 5.334 8 C -0.073 4.073 9 C 0.142 3.858 10 C -0.581 4.581 11 H 0.067 0.933 12 C -0.188 4.188 13 N -0.567 5.567 14 Si 0.788 3.212 15 H -0.187 1.187 16 H -0.201 1.201 17 H -0.203 1.203 18 C -0.109 4.109 19 N -0.111 5.111 20 N -0.114 5.114 21 C -0.058 4.058 22 H 0.086 0.914 23 H 0.122 0.878 24 H 0.148 0.852 25 H 0.098 0.902 26 H 0.084 0.916 27 H 0.106 0.894 28 H 0.045 0.955 29 H 0.022 0.978 30 H 0.076 0.924 31 H 0.240 0.760 32 H 0.116 0.884 33 H 0.128 0.872 34 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.043 3.682 -20.781 21.488 hybrid contribution -0.176 -0.107 1.395 1.410 sum -4.220 3.576 -19.385 20.159 Atomic orbital electron populations 1.23666 0.91830 1.08496 1.05909 1.85824 1.09963 0.93382 1.96208 1.23464 1.04915 0.97728 0.89261 1.20604 1.18279 0.95316 0.93175 1.17472 0.80114 0.81696 0.84618 1.90720 1.44028 1.31715 1.79290 1.47924 1.40858 1.31929 1.12702 1.22258 0.96069 0.87539 1.01436 1.18767 0.95639 0.93696 0.77736 1.21649 1.19161 1.22474 0.94795 0.93289 1.25792 0.98996 0.98982 0.95005 1.70035 1.42366 1.43959 1.00294 0.85527 0.79387 0.78952 0.77317 1.18696 1.20101 1.20339 1.24656 0.97380 0.97112 0.91757 1.76962 1.22547 0.98200 1.13387 1.49254 1.50258 1.04309 1.07562 1.22466 1.05170 1.03457 0.74687 0.91424 0.87808 0.85163 0.90153 0.91574 0.89368 0.95484 0.97848 0.92380 0.75986 0.88403 0.87244 0.86661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 10.50 113.37 1.19 -1.73 16 2 S -0.08 -2.41 21.28 -56.49 -1.20 -3.61 16 3 C 0.09 2.81 6.68 84.49 0.56 3.37 16 4 C -0.26 -9.21 5.53 -19.98 -0.11 -9.32 16 5 C 0.57 26.26 7.50 86.46 0.65 26.91 16 6 O -0.58 -31.05 15.81 -4.32 -0.07 -31.12 16 7 N -0.60 -27.38 2.86 -855.84 -2.45 -29.83 16 8 C 0.07 2.25 9.10 127.77 1.16 3.41 16 9 C 0.26 14.61 5.22 85.63 0.45 15.06 16 10 C -0.54 -32.18 9.39 25.60 0.24 -31.94 16 11 H 0.05 2.92 7.81 -2.91 -0.02 2.89 16 12 C 0.01 0.66 5.46 84.65 0.46 1.13 16 13 N -0.93 -56.71 13.29 21.45 0.28 -56.43 16 14 Si 0.96 45.80 29.54 68.60 2.03 47.83 16 15 H -0.26 -11.76 7.11 99.48 0.71 -11.06 16 16 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 17 H -0.28 -13.23 7.11 99.48 0.71 -12.52 16 18 C 0.08 2.16 9.55 85.72 0.82 2.98 16 19 N -0.29 -7.76 12.47 -56.24 -0.70 -8.46 16 20 N -0.33 -8.33 4.00 -363.18 -1.45 -9.78 16 21 C 0.08 1.13 11.25 127.77 1.44 2.56 16 22 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.10 1.65 8.14 -2.40 -0.02 1.63 16 24 H 0.13 2.30 8.14 -2.39 -0.02 2.28 16 25 H 0.08 2.07 7.87 -2.39 -0.02 2.05 16 26 H 0.07 2.22 8.11 -2.39 -0.02 2.20 16 27 H 0.09 2.48 4.74 -2.39 -0.01 2.47 16 28 H 0.03 1.51 8.07 -2.39 -0.02 1.49 16 29 H 0.00 0.22 7.36 -2.38 -0.02 0.20 16 30 H 0.27 15.33 8.31 -92.71 -0.77 14.56 16 31 H 0.22 4.79 6.20 -2.92 -0.02 4.78 16 32 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.11 1.15 7.69 -2.39 -0.02 1.13 16 34 H 0.11 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -79.06 307.63 4.41 -74.64 By element: Atomic # 1 Polarization: 3.22 SS G_CDS: 1.11 Total: 4.33 kcal Atomic # 6 Polarization: 5.57 SS G_CDS: 6.86 Total: 12.43 kcal Atomic # 7 Polarization: -100.18 SS G_CDS: -4.31 Total: -104.50 kcal Atomic # 8 Polarization: -31.05 SS G_CDS: -0.07 Total: -31.12 kcal Atomic # 14 Polarization: 45.80 SS G_CDS: 2.03 Total: 47.83 kcal Atomic # 16 Polarization: -2.41 SS G_CDS: -1.20 Total: -3.61 kcal Total: -79.06 4.41 -74.64 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331087218.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.730 kcal (2) G-P(sol) polarization free energy of solvation -79.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.645 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds