Wall clock time and date at job start Mon Mar 30 2020 04:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47482 * 2 1 4 4 C 1.37007 * 120.00296 * 262.05961 * 3 2 1 5 5 H 1.07997 * 120.00474 * 195.90249 * 4 3 2 6 6 C 1.38932 * 119.99705 * 15.89818 * 4 3 2 7 7 N 1.31447 * 120.00305 * 13.46553 * 6 4 3 8 8 Si 1.86809 * 119.99983 * 193.46871 * 6 4 3 9 9 H 1.48497 * 109.46859 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47267 * 120.00029 * 8 6 4 11 11 H 1.48498 * 109.46698 * 240.00260 * 8 6 4 12 12 C 1.34777 * 119.99853 * 82.04978 * 3 2 1 13 13 O 1.21725 * 119.99814 * 181.79508 * 12 3 2 14 14 C 1.46643 * 120.00100 * 1.80042 * 12 3 2 15 15 C 1.41499 * 126.53091 * 350.00706 * 14 12 3 16 16 N 1.30279 * 108.22518 * 180.02562 * 15 14 12 17 17 N 1.39891 * 109.28324 * 359.97438 * 16 15 14 18 18 C 1.46497 * 125.74969 * 180.02562 * 17 16 15 19 19 C 1.34982 * 108.49483 * 359.73357 * 17 16 15 20 20 S 1.76202 * 126.47070 * 180.28592 * 19 17 16 21 21 C 1.81001 * 100.00124 * 275.16644 * 20 19 17 22 22 H 1.09005 * 109.46971 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47130 * 299.99787 * 1 2 3 24 24 H 1.09001 * 109.46494 * 60.00136 * 1 2 3 25 25 H 1.09006 * 109.47065 * 239.99761 * 2 1 3 26 26 H 1.08998 * 109.47154 * 120.00188 * 2 1 3 27 27 H 0.96994 * 120.00168 * 179.97438 * 7 6 4 28 28 H 1.07993 * 125.88570 * 359.97438 * 15 14 12 29 29 H 1.09004 * 109.47351 * 89.97935 * 18 17 16 30 30 H 1.08998 * 109.47448 * 209.98138 * 18 17 16 31 31 H 1.09000 * 109.47289 * 329.98066 * 18 17 16 32 32 H 1.08991 * 109.47222 * 180.02562 * 21 20 19 33 33 H 1.09007 * 109.46919 * 300.00350 * 21 20 19 34 34 H 1.09002 * 109.46984 * 59.99763 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.4014 1.9724 -1.1751 5 1 2.9927 2.8759 -1.1575 6 6 2.0290 1.4095 -2.3895 7 7 1.1025 0.4778 -2.4255 8 14 2.8451 1.9768 -3.9712 9 1 3.8474 3.0279 -3.6617 10 1 3.5201 0.8245 -4.6209 11 1 1.8163 2.5293 -4.8885 12 6 2.0909 2.0703 1.1560 13 8 2.4657 3.2284 1.1517 14 6 1.7183 1.4249 2.4190 15 6 1.0842 0.1687 2.5680 16 7 0.9206 -0.0567 3.8406 17 7 1.4316 1.0220 4.5703 18 6 1.4346 1.1430 6.0302 19 6 1.9271 1.9295 3.7026 20 16 2.6896 3.4639 4.1136 21 6 1.2217 4.5099 4.2794 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 0.8423 0.0852 -3.2734 28 1 0.7864 -0.4892 1.7651 29 1 2.3537 0.7131 6.4286 30 1 1.3756 2.1954 6.3078 31 1 0.5767 0.6104 6.4408 32 1 1.5256 5.5238 4.5390 33 1 0.6775 4.5245 3.3351 34 1 0.5781 4.1110 5.0635 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331091096.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:40 Heat of formation + Delta-G solvation = 91.491468 kcal Electronic energy + Delta-G solvation = -19102.458823 eV Core-core repulsion = 16165.790466 eV Total energy + Delta-G solvation = -2936.668357 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.83570 -38.13357 -35.08139 -33.32662 -31.64233 -29.88223 -29.71188 -28.65923 -26.83381 -24.86826 -22.45953 -21.63152 -20.94377 -19.31305 -17.21144 -16.67677 -16.13291 -15.44934 -14.84985 -14.57148 -14.24329 -13.91615 -13.65743 -13.58019 -13.18240 -12.90289 -12.65824 -12.49257 -12.21983 -11.81146 -11.42808 -11.12646 -11.08516 -10.89160 -10.62821 -10.44808 -10.29607 -10.12972 -9.91932 -9.05312 -8.86404 -8.40654 -8.07140 -7.63468 -7.26198 -6.26047 -3.77538 1.40281 1.86549 2.66951 2.77704 2.96270 3.21572 3.27880 3.35204 4.14139 4.45838 4.62018 5.00384 5.14429 5.22084 5.23792 5.31950 5.40485 5.46645 5.74794 5.78618 5.92699 6.04541 6.17403 6.55671 6.62195 6.76083 6.88469 6.96935 7.33255 7.51359 7.78370 7.88035 8.17364 8.58549 9.24055 9.47959 10.09531 10.70594 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.027531 B = 0.006485 C = 0.005510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.783684 B = 4316.899379 C = 5080.638304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.104 3.896 3 N -0.433 5.433 4 C -0.287 4.287 5 H 0.104 0.896 6 C 0.023 3.977 7 N -0.876 5.876 8 Si 0.927 3.073 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.283 1.283 12 C 0.507 3.493 13 O -0.574 6.574 14 C -0.191 4.191 15 C 0.039 3.961 16 N -0.294 5.294 17 N -0.354 5.354 18 C 0.099 3.901 19 C 0.065 3.935 20 S -0.042 6.042 21 C -0.145 4.145 22 H 0.042 0.958 23 H 0.031 0.969 24 H 0.098 0.902 25 H 0.108 0.892 26 H 0.044 0.956 27 H 0.265 0.735 28 H 0.224 0.776 29 H 0.077 0.923 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.103 0.897 33 H 0.087 0.913 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.431 -0.217 12.055 12.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.019 4.019 3 N -0.151 5.151 4 C -0.415 4.415 5 H 0.122 0.878 6 C -0.179 4.179 7 N -0.517 5.517 8 Si 0.754 3.246 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.209 1.209 12 C 0.295 3.705 13 O -0.459 6.459 14 C -0.209 4.209 15 C -0.147 4.147 16 N -0.117 5.117 17 N -0.138 5.138 18 C -0.043 4.043 19 C -0.175 4.175 20 S 0.185 5.815 21 C -0.314 4.314 22 H 0.060 0.940 23 H 0.050 0.950 24 H 0.116 0.884 25 H 0.126 0.874 26 H 0.061 0.939 27 H 0.076 0.924 28 H 0.240 0.760 29 H 0.095 0.905 30 H 0.106 0.894 31 H 0.107 0.893 32 H 0.122 0.878 33 H 0.106 0.894 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -0.655 -0.261 13.028 13.047 hybrid contribution -0.867 0.143 -1.514 1.751 sum -1.522 -0.118 11.514 11.615 Atomic orbital electron populations 1.22371 0.96752 1.00148 1.02687 1.21928 0.94342 0.84356 1.01297 1.43598 1.54914 1.10912 1.05625 1.19834 1.29466 1.10282 0.81936 0.87812 1.25291 0.96022 0.97185 0.99373 1.70052 1.27619 1.27712 1.26318 0.85832 0.79131 0.78563 0.81029 1.19271 1.20737 1.20887 1.16773 0.85160 0.86182 0.82368 1.90669 1.52532 1.16405 1.86279 1.21029 1.08811 0.97007 0.94068 1.25791 0.97644 0.96967 0.94281 1.76946 1.20779 1.08348 1.05609 1.48793 1.44788 1.13889 1.06319 1.21842 1.03840 1.03712 0.74864 1.23229 1.05058 0.97590 0.91584 1.85371 1.09865 0.96687 1.89614 1.23575 0.99933 1.02324 1.05537 0.93953 0.95025 0.88351 0.87381 0.93862 0.92394 0.76040 0.90496 0.89446 0.89319 0.87823 0.89359 0.91205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.35 8.12 37.16 0.30 -3.05 16 2 C 0.10 2.34 4.78 -4.04 -0.02 2.32 16 3 N -0.43 -11.18 2.64 -116.30 -0.31 -11.49 16 4 C -0.29 -7.88 9.40 -14.98 -0.14 -8.02 16 5 H 0.10 3.00 7.32 -52.49 -0.38 2.61 16 6 C 0.02 0.58 5.10 -17.46 -0.09 0.49 16 7 N -0.88 -22.01 8.21 55.50 0.46 -21.56 16 8 Si 0.93 20.38 29.57 -169.99 -5.03 15.35 16 9 H -0.27 -5.97 7.11 56.52 0.40 -5.57 16 10 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 11 H -0.28 -6.20 7.11 56.52 0.40 -5.80 16 12 C 0.51 13.02 7.52 -12.87 -0.10 12.93 16 13 O -0.57 -16.05 15.23 5.17 0.08 -15.97 16 14 C -0.19 -4.22 5.91 -104.79 -0.62 -4.84 16 15 C 0.04 0.76 8.36 -16.97 -0.14 0.62 16 16 N -0.29 -5.43 12.46 30.88 0.38 -5.05 16 17 N -0.35 -5.95 4.00 -66.11 -0.26 -6.21 16 18 C 0.10 1.10 11.25 59.85 0.67 1.77 16 19 C 0.06 1.25 6.70 -15.70 -0.11 1.15 16 20 S -0.04 -0.73 20.75 -107.50 -2.23 -2.96 16 21 C -0.14 -1.99 10.50 101.05 1.06 -0.93 16 22 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 23 H 0.03 0.64 6.07 -51.93 -0.32 0.32 16 24 H 0.10 2.34 6.26 -51.93 -0.32 2.01 16 25 H 0.11 2.59 5.88 -51.93 -0.31 2.28 16 26 H 0.04 0.89 4.82 -51.93 -0.25 0.64 16 27 H 0.27 6.34 8.31 -40.82 -0.34 6.00 16 28 H 0.22 4.11 3.26 -52.49 -0.17 3.94 16 29 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.09 0.81 7.70 -51.93 -0.40 0.41 16 31 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 32 H 0.10 1.15 8.14 -51.92 -0.42 0.73 16 33 H 0.09 1.42 8.14 -51.91 -0.42 1.00 16 34 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 LS Contribution 290.30 15.07 4.37 4.37 Total: -1.00 -31.21 290.30 -5.53 -36.75 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -3.82 Total: 4.33 kcal Atomic # 6 Polarization: 1.61 SS G_CDS: 0.82 Total: 2.44 kcal Atomic # 7 Polarization: -44.58 SS G_CDS: 0.27 Total: -44.31 kcal Atomic # 8 Polarization: -16.05 SS G_CDS: 0.08 Total: -15.97 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.03 Total: 15.35 kcal Atomic # 16 Polarization: -0.73 SS G_CDS: -2.23 Total: -2.96 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -31.21 -5.53 -36.75 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331091096.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.238 kcal (2) G-P(sol) polarization free energy of solvation -31.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 97.025 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.746 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds