Wall clock time and date at job start Mon Mar 30 2020 04:53:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46496 * 109.47482 * 2 1 4 4 C 1.37007 * 120.00296 * 262.05961 * 3 2 1 5 5 H 1.07997 * 120.00474 * 195.90249 * 4 3 2 6 6 C 1.38932 * 119.99705 * 15.89818 * 4 3 2 7 7 N 1.31447 * 120.00305 * 13.46553 * 6 4 3 8 8 Si 1.86809 * 119.99983 * 193.46871 * 6 4 3 9 9 H 1.48497 * 109.46859 * 359.97438 * 8 6 4 10 10 H 1.48503 * 109.47267 * 120.00029 * 8 6 4 11 11 H 1.48498 * 109.46698 * 240.00260 * 8 6 4 12 12 C 1.34777 * 119.99853 * 82.04978 * 3 2 1 13 13 O 1.21725 * 119.99814 * 181.79508 * 12 3 2 14 14 C 1.46643 * 120.00100 * 1.80042 * 12 3 2 15 15 C 1.41499 * 126.53091 * 350.00706 * 14 12 3 16 16 N 1.30279 * 108.22518 * 180.02562 * 15 14 12 17 17 N 1.39891 * 109.28324 * 359.97438 * 16 15 14 18 18 C 1.46497 * 125.74969 * 180.02562 * 17 16 15 19 19 C 1.34982 * 108.49483 * 359.73357 * 17 16 15 20 20 S 1.76202 * 126.47070 * 180.28592 * 19 17 16 21 21 C 1.81001 * 100.00124 * 275.16644 * 20 19 17 22 22 H 1.09005 * 109.46971 * 179.97438 * 1 2 3 23 23 H 1.08994 * 109.47130 * 299.99787 * 1 2 3 24 24 H 1.09001 * 109.46494 * 60.00136 * 1 2 3 25 25 H 1.09006 * 109.47065 * 239.99761 * 2 1 3 26 26 H 1.08998 * 109.47154 * 120.00188 * 2 1 3 27 27 H 0.96994 * 120.00168 * 179.97438 * 7 6 4 28 28 H 1.07993 * 125.88570 * 359.97438 * 15 14 12 29 29 H 1.09004 * 109.47351 * 89.97935 * 18 17 16 30 30 H 1.08998 * 109.47448 * 209.98138 * 18 17 16 31 31 H 1.09000 * 109.47289 * 329.98066 * 18 17 16 32 32 H 1.08991 * 109.47222 * 180.02562 * 21 20 19 33 33 H 1.09007 * 109.46919 * 300.00350 * 21 20 19 34 34 H 1.09002 * 109.46984 * 59.99763 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.4014 1.9724 -1.1751 5 1 2.9927 2.8759 -1.1575 6 6 2.0290 1.4095 -2.3895 7 7 1.1025 0.4778 -2.4255 8 14 2.8451 1.9768 -3.9712 9 1 3.8474 3.0279 -3.6617 10 1 3.5201 0.8245 -4.6209 11 1 1.8163 2.5293 -4.8885 12 6 2.0909 2.0703 1.1560 13 8 2.4657 3.2284 1.1517 14 6 1.7183 1.4249 2.4190 15 6 1.0842 0.1687 2.5680 16 7 0.9206 -0.0567 3.8406 17 7 1.4316 1.0220 4.5703 18 6 1.4346 1.1430 6.0302 19 6 1.9271 1.9295 3.7026 20 16 2.6896 3.4639 4.1136 21 6 1.2217 4.5099 4.2794 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 -0.3632 0.5138 -0.8900 25 1 1.8934 -0.5139 -0.8900 26 1 1.8933 -0.5138 0.8899 27 1 0.8423 0.0852 -3.2734 28 1 0.7864 -0.4892 1.7651 29 1 2.3537 0.7131 6.4286 30 1 1.3756 2.1954 6.3078 31 1 0.5767 0.6104 6.4408 32 1 1.5256 5.5238 4.5390 33 1 0.6775 4.5245 3.3351 34 1 0.5781 4.1110 5.0635 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331091096.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:53:40 Heat of formation + Delta-G solvation = 71.065311 kcal Electronic energy + Delta-G solvation = -19103.344568 eV Core-core repulsion = 16165.790466 eV Total energy + Delta-G solvation = -2937.554102 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.33296 -39.97121 -37.01766 -34.77957 -33.44997 -31.52702 -31.36462 -29.80375 -28.18206 -26.68316 -24.19902 -23.28755 -22.37909 -20.99151 -18.97468 -18.36058 -17.78104 -16.78792 -16.55354 -16.16916 -15.87549 -15.62884 -15.38892 -14.83087 -14.51742 -14.41655 -13.93906 -13.64036 -13.55133 -13.46051 -13.15043 -12.84665 -12.82911 -12.60067 -12.23741 -12.08932 -12.01731 -11.81568 -11.66266 -10.83028 -10.40472 -10.29804 -9.63042 -9.55654 -8.64037 -8.20732 -5.81977 0.00379 0.42550 1.15123 1.42095 1.46334 1.49711 1.59502 1.70580 2.32223 2.58381 3.06163 3.25725 3.60065 4.04572 4.15532 4.20402 4.26230 4.35938 4.39879 4.44207 4.51400 4.60951 4.82349 4.86246 4.86926 5.13319 5.33202 5.46097 5.54474 5.66865 5.95742 6.17999 6.40918 6.63547 7.25306 7.54526 8.15346 8.73538 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.027531 B = 0.006485 C = 0.005510 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1016.783684 B = 4316.899379 C = 5080.638304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.108 3.892 3 N -0.446 5.446 4 C -0.331 4.331 5 H 0.074 0.926 6 C -0.003 4.003 7 N -0.878 5.878 8 Si 0.989 3.011 9 H -0.278 1.278 10 H -0.268 1.268 11 H -0.276 1.276 12 C 0.498 3.502 13 O -0.613 6.613 14 C -0.239 4.239 15 C 0.041 3.959 16 N -0.295 5.295 17 N -0.337 5.337 18 C 0.083 3.917 19 C 0.074 3.926 20 S -0.062 6.062 21 C -0.133 4.133 22 H 0.074 0.926 23 H 0.033 0.967 24 H 0.068 0.932 25 H 0.091 0.909 26 H 0.064 0.936 27 H 0.272 0.728 28 H 0.229 0.771 29 H 0.097 0.903 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.133 0.867 33 H 0.060 0.940 34 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.086 -0.826 13.646 13.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.014 4.014 3 N -0.164 5.164 4 C -0.459 4.459 5 H 0.092 0.908 6 C -0.204 4.204 7 N -0.518 5.518 8 Si 0.813 3.187 9 H -0.203 1.203 10 H -0.193 1.193 11 H -0.202 1.202 12 C 0.288 3.712 13 O -0.500 6.500 14 C -0.257 4.257 15 C -0.144 4.144 16 N -0.118 5.118 17 N -0.120 5.120 18 C -0.056 4.056 19 C -0.168 4.168 20 S 0.164 5.836 21 C -0.301 4.301 22 H 0.093 0.907 23 H 0.052 0.948 24 H 0.086 0.914 25 H 0.109 0.891 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.245 0.755 29 H 0.115 0.885 30 H 0.128 0.872 31 H 0.130 0.870 32 H 0.151 0.849 33 H 0.079 0.921 34 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -1.343 -0.933 14.647 14.738 hybrid contribution -0.687 0.378 -1.837 1.997 sum -2.030 -0.555 12.811 12.982 Atomic orbital electron populations 1.22185 0.95463 1.01709 1.01175 1.21977 0.95304 0.82805 1.01360 1.43782 1.55198 1.12027 1.05353 1.19695 1.31684 1.10882 0.83672 0.90800 1.25948 0.96037 0.97072 1.01346 1.70141 1.27037 1.27303 1.27294 0.84939 0.78078 0.78213 0.77442 1.20302 1.19271 1.20179 1.17327 0.84311 0.86011 0.83538 1.90605 1.54219 1.18046 1.87143 1.20801 1.12495 0.98886 0.93544 1.25706 0.97492 0.96199 0.94994 1.76914 1.21022 1.08861 1.05035 1.49252 1.42231 1.12368 1.08108 1.22415 1.05973 1.05936 0.71300 1.23460 1.03602 0.98400 0.91346 1.85392 1.12288 0.96740 1.89157 1.23641 0.98204 1.03192 1.05095 0.90745 0.94848 0.91369 0.89105 0.91801 0.91760 0.75538 0.88486 0.87212 0.87008 0.84877 0.92118 0.88209 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.09 8.12 71.98 0.58 -5.50 16 2 C 0.11 4.91 4.78 86.38 0.41 5.32 16 3 N -0.45 -23.93 2.64 -640.06 -1.69 -25.62 16 4 C -0.33 -19.02 9.40 84.05 0.79 -18.23 16 5 H 0.07 4.56 7.32 -2.91 -0.02 4.54 16 6 C 0.00 -0.14 5.10 84.92 0.43 0.30 16 7 N -0.88 -44.38 8.21 21.66 0.18 -44.20 16 8 Si 0.99 42.33 29.57 68.60 2.03 44.36 16 9 H -0.28 -12.26 7.11 99.48 0.71 -11.56 16 10 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 11 H -0.28 -11.49 7.11 99.48 0.71 -10.78 16 12 C 0.50 26.57 7.52 86.44 0.65 27.22 16 13 O -0.61 -35.89 15.23 -4.43 -0.07 -35.96 16 14 C -0.24 -10.61 5.91 -19.98 -0.12 -10.73 16 15 C 0.04 1.56 8.36 85.73 0.72 2.28 16 16 N -0.30 -10.29 12.46 -56.22 -0.70 -10.99 16 17 N -0.34 -10.49 4.00 -363.08 -1.45 -11.94 16 18 C 0.08 1.51 11.25 127.77 1.44 2.95 16 19 C 0.07 2.78 6.70 84.51 0.57 3.34 16 20 S -0.06 -2.06 20.75 -56.49 -1.17 -3.23 16 21 C -0.13 -3.37 10.50 113.37 1.19 -2.18 16 22 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 23 H 0.03 1.34 6.07 -2.39 -0.01 1.33 16 24 H 0.07 3.26 6.26 -2.39 -0.01 3.24 16 25 H 0.09 4.41 5.88 -2.38 -0.01 4.39 16 26 H 0.06 2.61 4.82 -2.39 -0.01 2.60 16 27 H 0.27 12.84 8.31 -92.71 -0.77 12.07 16 28 H 0.23 8.20 3.26 -2.91 -0.01 8.19 16 29 H 0.10 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.11 1.56 7.70 -2.39 -0.02 1.54 16 31 H 0.11 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.13 2.59 8.14 -2.40 -0.02 2.57 16 33 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 34 H 0.10 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -70.33 290.30 4.91 -65.42 By element: Atomic # 1 Polarization: 16.26 SS G_CDS: 1.13 Total: 17.39 kcal Atomic # 6 Polarization: -1.88 SS G_CDS: 6.66 Total: 4.78 kcal Atomic # 7 Polarization: -89.09 SS G_CDS: -3.67 Total: -92.75 kcal Atomic # 8 Polarization: -35.89 SS G_CDS: -0.07 Total: -35.96 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Atomic # 16 Polarization: -2.06 SS G_CDS: -1.17 Total: -3.23 kcal Total: -70.33 4.91 -65.42 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331091096.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.482 kcal (2) G-P(sol) polarization free energy of solvation -70.331 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.151 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.915 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 71.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds