Wall clock time and date at job start Mon Mar 30 2020 05:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37101 * 120.00015 * 2 1 4 4 H 1.08001 * 119.99608 * 204.39561 * 3 2 1 5 5 C 1.38947 * 120.00034 * 24.38693 * 3 2 1 6 6 N 1.31410 * 119.99740 * 12.65490 * 5 3 2 7 7 Si 1.86798 * 120.00035 * 192.64813 * 5 3 2 8 8 H 1.48498 * 109.47131 * 60.00584 * 7 5 3 9 9 H 1.48504 * 109.46835 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47295 * 300.00257 * 7 5 3 11 11 C 1.34777 * 120.00150 * 179.97438 * 2 1 3 12 12 O 1.21297 * 119.99887 * 179.97438 * 11 2 1 13 13 C 1.50703 * 119.99997 * 359.97438 * 11 2 1 14 14 N 1.46504 * 109.46751 * 180.02562 * 13 11 2 15 15 C 1.33786 * 124.17795 * 269.95763 * 14 13 11 16 16 O 1.21539 * 123.77188 * 0.03334 * 15 14 13 17 17 N 1.34870 * 112.50158 * 180.12897 * 15 14 13 18 18 C 1.47311 * 106.43637 * 359.86635 * 17 15 14 19 19 C 1.52998 * 110.59592 * 241.52273 * 18 17 15 20 20 C 1.52997 * 110.59780 * 118.73009 * 18 17 15 21 21 C 1.34762 * 124.17501 * 90.00585 * 14 13 11 22 22 O 1.21235 * 127.16076 * 359.97438 * 21 14 13 23 23 H 1.09005 * 109.46487 * 265.86371 * 1 2 3 24 24 H 1.08994 * 109.47173 * 25.86808 * 1 2 3 25 25 H 1.08997 * 109.46838 * 145.87304 * 1 2 3 26 26 H 0.97003 * 120.00208 * 179.97438 * 6 5 3 27 27 H 1.09005 * 109.46849 * 60.00543 * 13 11 2 28 28 H 1.08993 * 109.47032 * 299.99778 * 13 11 2 29 29 H 0.97003 * 126.86855 * 179.97438 * 17 15 14 30 30 H 1.09006 * 109.46903 * 296.46450 * 19 18 17 31 31 H 1.08997 * 109.47695 * 56.46970 * 19 18 17 32 32 H 1.09004 * 109.46993 * 176.47421 * 19 18 17 33 33 H 1.08997 * 109.47144 * 183.53035 * 20 18 17 34 34 H 1.09003 * 109.47168 * 303.53057 * 20 18 17 35 35 H 1.08999 * 109.47442 * 63.53178 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1582 1.2290 -0.3863 5 6 1.5487 2.3370 0.4968 6 7 0.4346 2.2491 1.1881 7 14 2.3236 4.0073 0.1823 8 1 2.4038 4.2482 -1.2808 9 1 1.4937 5.0647 0.8137 10 1 3.6894 4.0370 0.7645 11 6 2.1389 -1.1672 0.0005 12 8 3.3519 -1.1671 0.0001 13 6 1.3854 -2.4723 0.0017 14 7 2.3376 -3.5858 0.0027 15 6 2.8254 -4.1585 -1.1036 16 8 2.5287 -3.8129 -2.2304 17 7 3.6818 -5.1638 -0.8298 18 6 3.7630 -5.2539 0.6384 19 6 5.1923 -4.9893 1.1156 20 6 3.2808 -6.6233 1.1211 21 6 2.8294 -4.1602 1.1181 22 8 2.5775 -3.8641 2.2664 23 1 -0.3632 -0.0741 1.0251 24 1 -0.3633 0.9246 -0.4483 25 1 -0.3633 -0.8507 -0.5765 26 1 0.0147 3.0516 1.5353 27 1 0.7585 -2.5307 -0.8881 28 1 0.7592 -2.5295 0.8919 29 1 4.1532 -5.7178 -1.4714 30 1 5.8537 -5.7649 0.7295 31 1 5.5225 -4.0161 0.7522 32 1 5.2191 -4.9984 2.2053 33 1 3.2892 -6.6481 2.2107 34 1 2.2670 -6.7991 0.7614 35 1 3.9428 -7.3985 0.7350 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337555532.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:52 Heat of formation + Delta-G solvation = -63.088987 kcal Electronic energy + Delta-G solvation = -21432.916915 eV Core-core repulsion = 18046.792576 eV Total energy + Delta-G solvation = -3386.124340 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.30241 -38.43489 -38.34993 -36.39761 -35.13455 -34.39961 -31.74376 -31.34365 -28.49208 -27.68425 -26.18492 -24.50540 -23.83402 -21.87395 -20.49926 -19.03553 -17.70772 -17.08552 -16.72998 -16.10992 -15.64843 -15.55427 -15.18184 -14.63259 -14.42506 -14.20936 -13.92387 -13.80793 -13.34124 -12.76595 -12.46437 -12.38514 -12.35105 -12.24016 -11.72523 -11.53523 -11.29551 -11.26378 -10.86389 -10.60786 -10.40528 -10.28070 -9.91848 -9.83212 -9.44214 -9.01652 -8.36874 -7.69284 -6.33620 -3.90017 1.85818 2.36668 3.18090 3.19794 3.25083 3.28728 3.31805 3.80062 3.99536 4.14709 4.45585 4.66040 4.85183 5.07830 5.25396 5.31106 5.35467 5.46425 5.51853 5.59130 5.71586 5.73214 5.83624 5.95090 5.99931 6.29847 6.81355 6.87941 7.16339 7.28622 7.55941 7.60582 8.09183 8.33081 8.46161 9.15066 9.37143 9.91021 10.71238 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.032034 B = 0.005142 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.872274 B = 5443.556202 C = 5495.535781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.439 5.439 3 C -0.306 4.306 4 H 0.097 0.903 5 C 0.032 3.968 6 N -0.880 5.880 7 Si 0.929 3.071 8 H -0.273 1.273 9 H -0.283 1.283 10 H -0.273 1.273 11 C 0.434 3.566 12 O -0.582 6.582 13 C 0.106 3.894 14 N -0.552 5.552 15 C 0.710 3.290 16 O -0.542 6.542 17 N -0.726 5.726 18 C 0.119 3.881 19 C -0.147 4.147 20 C -0.144 4.144 21 C 0.535 3.465 22 O -0.464 6.464 23 H 0.055 0.945 24 H 0.078 0.922 25 H 0.026 0.974 26 H 0.269 0.731 27 H 0.110 0.890 28 H 0.111 0.889 29 H 0.436 0.564 30 H 0.075 0.925 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.046 -15.903 -0.421 16.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.158 5.158 3 C -0.434 4.434 4 H 0.115 0.885 5 C -0.171 4.171 6 N -0.519 5.519 7 Si 0.755 3.245 8 H -0.198 1.198 9 H -0.209 1.209 10 H -0.198 1.198 11 C 0.220 3.780 12 O -0.466 6.466 13 C -0.019 4.019 14 N -0.297 5.297 15 C 0.411 3.589 16 O -0.415 6.415 17 N -0.391 5.391 18 C 0.028 3.972 19 C -0.205 4.205 20 C -0.202 4.202 21 C 0.321 3.679 22 O -0.333 6.333 23 H 0.074 0.926 24 H 0.097 0.903 25 H 0.045 0.955 26 H 0.079 0.921 27 H 0.128 0.872 28 H 0.129 0.871 29 H 0.280 0.720 30 H 0.094 0.906 31 H 0.093 0.907 32 H 0.101 0.899 33 H 0.102 0.898 34 H 0.085 0.915 35 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 2.094 -15.287 -0.279 15.432 hybrid contribution 0.343 0.766 -0.343 0.907 sum 2.437 -14.521 -0.622 14.737 Atomic orbital electron populations 1.21569 0.81024 1.00300 1.00829 1.43499 1.05543 1.04463 1.62251 1.19594 1.00702 0.83896 1.39200 0.88480 1.25357 0.96614 1.00183 0.94987 1.69979 1.19132 1.29862 1.32972 0.85961 0.79041 0.80734 0.78743 1.19839 1.20876 1.19781 1.20062 0.88387 0.84795 0.84741 1.90522 1.13642 1.86716 1.55717 1.21551 0.90366 0.84603 1.05335 1.45823 1.43320 1.32630 1.07882 1.15842 0.79179 0.79635 0.84215 1.90984 1.63374 1.66616 1.20533 1.45659 1.48898 1.37542 1.06986 1.21425 0.97768 0.96421 0.81545 1.21993 0.91897 1.03751 1.02892 1.21982 1.02207 0.93123 1.02935 1.20665 0.79971 0.82320 0.84965 1.90778 1.59327 1.65160 1.17992 0.92615 0.90297 0.95507 0.92091 0.87192 0.87111 0.72041 0.90589 0.90742 0.89945 0.89848 0.91480 0.90465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.38 8.44 59.85 0.51 2.89 16 2 N -0.44 -11.57 3.01 -122.19 -0.37 -11.94 16 3 C -0.31 -8.75 9.24 -14.93 -0.14 -8.89 16 4 H 0.10 2.91 7.45 -52.49 -0.39 2.52 16 5 C 0.03 0.86 5.04 -17.47 -0.09 0.77 16 6 N -0.88 -23.68 10.83 55.50 0.60 -23.08 16 7 Si 0.93 21.08 29.57 -169.99 -5.03 16.06 16 8 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 9 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 10 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 11 C 0.43 11.09 7.70 -10.98 -0.08 11.01 16 12 O -0.58 -16.83 16.14 5.54 0.09 -16.74 16 13 C 0.11 2.11 4.79 -5.19 -0.02 2.08 16 14 N -0.55 -10.26 2.09 -121.92 -0.26 -10.52 16 15 C 0.71 12.56 8.63 -87.72 -0.76 11.81 16 16 O -0.54 -11.30 17.48 5.33 0.09 -11.21 16 17 N -0.73 -9.03 5.93 -52.85 -0.31 -9.34 16 18 C 0.12 1.42 1.37 -132.09 -0.18 1.24 16 19 C -0.15 -1.56 8.98 37.16 0.33 -1.23 16 20 C -0.14 -1.18 8.98 37.16 0.33 -0.85 16 21 C 0.53 9.10 6.98 -10.56 -0.07 9.03 16 22 O -0.46 -9.00 17.76 5.60 0.10 -8.90 16 23 H 0.06 1.26 7.83 -51.93 -0.41 0.86 16 24 H 0.08 1.86 6.80 -51.93 -0.35 1.50 16 25 H 0.03 0.49 6.61 -51.93 -0.34 0.14 16 26 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 27 H 0.11 1.97 7.13 -51.93 -0.37 1.60 16 28 H 0.11 2.00 7.97 -51.93 -0.41 1.58 16 29 H 0.44 3.97 8.96 -40.82 -0.37 3.61 16 30 H 0.08 0.56 8.14 -51.93 -0.42 0.13 16 31 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 34 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 LS Contribution 304.20 15.07 4.58 4.58 Total: -1.00 -35.80 304.20 -4.98 -40.79 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -4.31 Total: 2.43 kcal Atomic # 6 Polarization: 28.04 SS G_CDS: -0.17 Total: 27.87 kcal Atomic # 7 Polarization: -54.54 SS G_CDS: -0.34 Total: -54.88 kcal Atomic # 8 Polarization: -37.13 SS G_CDS: 0.28 Total: -36.84 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.03 Total: 16.06 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -35.80 -4.98 -40.79 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337555532.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.302 kcal (2) G-P(sol) polarization free energy of solvation -35.802 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.787 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds