Wall clock time and date at job start Mon Mar 30 2020 05:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.37101 * 120.00015 * 2 1 4 4 H 1.08001 * 119.99608 * 204.39561 * 3 2 1 5 5 C 1.38947 * 120.00034 * 24.38693 * 3 2 1 6 6 N 1.31410 * 119.99740 * 12.65490 * 5 3 2 7 7 Si 1.86798 * 120.00035 * 192.64813 * 5 3 2 8 8 H 1.48498 * 109.47131 * 60.00584 * 7 5 3 9 9 H 1.48504 * 109.46835 * 180.02562 * 7 5 3 10 10 H 1.48498 * 109.47295 * 300.00257 * 7 5 3 11 11 C 1.34777 * 120.00150 * 179.97438 * 2 1 3 12 12 O 1.21297 * 119.99887 * 179.97438 * 11 2 1 13 13 C 1.50703 * 119.99997 * 359.97438 * 11 2 1 14 14 N 1.46504 * 109.46751 * 180.02562 * 13 11 2 15 15 C 1.33786 * 124.17795 * 269.95763 * 14 13 11 16 16 O 1.21539 * 123.77188 * 0.03334 * 15 14 13 17 17 N 1.34870 * 112.50158 * 180.12897 * 15 14 13 18 18 C 1.47311 * 106.43637 * 359.86635 * 17 15 14 19 19 C 1.52998 * 110.59592 * 241.52273 * 18 17 15 20 20 C 1.52997 * 110.59780 * 118.73009 * 18 17 15 21 21 C 1.34762 * 124.17501 * 90.00585 * 14 13 11 22 22 O 1.21235 * 127.16076 * 359.97438 * 21 14 13 23 23 H 1.09005 * 109.46487 * 265.86371 * 1 2 3 24 24 H 1.08994 * 109.47173 * 25.86808 * 1 2 3 25 25 H 1.08997 * 109.46838 * 145.87304 * 1 2 3 26 26 H 0.97003 * 120.00208 * 179.97438 * 6 5 3 27 27 H 1.09005 * 109.46849 * 60.00543 * 13 11 2 28 28 H 1.08993 * 109.47032 * 299.99778 * 13 11 2 29 29 H 0.97003 * 126.86855 * 179.97438 * 17 15 14 30 30 H 1.09006 * 109.46903 * 296.46450 * 19 18 17 31 31 H 1.08997 * 109.47695 * 56.46970 * 19 18 17 32 32 H 1.09004 * 109.46993 * 176.47421 * 19 18 17 33 33 H 1.08997 * 109.47144 * 183.53035 * 20 18 17 34 34 H 1.09003 * 109.47168 * 303.53057 * 20 18 17 35 35 H 1.08999 * 109.47442 * 63.53178 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1582 1.2290 -0.3863 5 6 1.5487 2.3370 0.4968 6 7 0.4346 2.2491 1.1881 7 14 2.3236 4.0073 0.1823 8 1 2.4038 4.2482 -1.2808 9 1 1.4937 5.0647 0.8137 10 1 3.6894 4.0370 0.7645 11 6 2.1389 -1.1672 0.0005 12 8 3.3519 -1.1671 0.0001 13 6 1.3854 -2.4723 0.0017 14 7 2.3376 -3.5858 0.0027 15 6 2.8254 -4.1585 -1.1036 16 8 2.5287 -3.8129 -2.2304 17 7 3.6818 -5.1638 -0.8298 18 6 3.7630 -5.2539 0.6384 19 6 5.1923 -4.9893 1.1156 20 6 3.2808 -6.6233 1.1211 21 6 2.8294 -4.1602 1.1181 22 8 2.5775 -3.8641 2.2664 23 1 -0.3632 -0.0741 1.0251 24 1 -0.3633 0.9246 -0.4483 25 1 -0.3633 -0.8507 -0.5765 26 1 0.0147 3.0516 1.5353 27 1 0.7585 -2.5307 -0.8881 28 1 0.7592 -2.5295 0.8919 29 1 4.1532 -5.7178 -1.4714 30 1 5.8537 -5.7649 0.7295 31 1 5.5225 -4.0161 0.7522 32 1 5.2191 -4.9984 2.2053 33 1 3.2892 -6.6481 2.2107 34 1 2.2670 -6.7991 0.7614 35 1 3.9428 -7.3985 0.7350 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337555532.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:44:51 Heat of formation + Delta-G solvation = -90.784481 kcal Electronic energy + Delta-G solvation = -21434.117882 eV Core-core repulsion = 18046.792576 eV Total energy + Delta-G solvation = -3387.325307 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -43.60185 -40.36783 -39.75481 -37.68176 -36.90880 -36.10045 -33.77415 -32.44329 -30.13264 -28.42902 -28.08429 -26.36852 -25.20730 -23.24230 -21.76901 -20.75986 -19.05870 -19.00123 -18.48320 -17.50378 -17.29024 -16.77756 -16.66871 -16.51003 -16.10526 -15.73033 -15.40129 -15.29117 -14.52570 -14.15935 -14.02144 -13.63584 -13.43944 -13.27841 -13.18367 -13.13082 -13.11001 -12.68568 -12.57036 -12.41973 -12.15994 -11.95803 -11.46554 -11.20944 -11.05609 -10.58977 -10.29475 -9.75615 -8.39937 -6.06141 0.54326 1.04769 1.35558 1.38838 1.49881 1.86478 1.89265 2.13319 2.25957 2.82649 2.99903 3.01933 3.53240 3.78779 3.85439 3.91335 4.09477 4.30438 4.47039 4.59037 4.61748 4.67230 4.75792 4.87579 4.97012 5.09863 5.20902 5.30484 5.38716 5.79092 5.99039 6.01070 6.30656 6.40246 7.04669 7.08727 7.33822 7.87947 8.63003 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.032034 B = 0.005142 C = 0.005094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 873.872274 B = 5443.556202 C = 5495.535781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.113 3.887 2 N -0.453 5.453 3 C -0.349 4.349 4 H 0.068 0.932 5 C 0.002 3.998 6 N -0.891 5.891 7 Si 0.992 3.008 8 H -0.266 1.266 9 H -0.265 1.265 10 H -0.278 1.278 11 C 0.420 3.580 12 O -0.627 6.627 13 C 0.115 3.885 14 N -0.564 5.564 15 C 0.702 3.298 16 O -0.581 6.581 17 N -0.698 5.698 18 C 0.128 3.872 19 C -0.145 4.145 20 C -0.137 4.137 21 C 0.520 3.480 22 O -0.496 6.496 23 H 0.050 0.950 24 H 0.063 0.937 25 H 0.070 0.930 26 H 0.277 0.723 27 H 0.130 0.870 28 H 0.129 0.871 29 H 0.454 0.546 30 H 0.119 0.881 31 H 0.039 0.961 32 H 0.088 0.912 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.121 -17.503 -0.314 17.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.030 4.030 2 N -0.171 5.171 3 C -0.477 4.477 4 H 0.086 0.914 5 C -0.201 4.201 6 N -0.529 5.529 7 Si 0.815 3.185 8 H -0.191 1.191 9 H -0.190 1.190 10 H -0.204 1.204 11 C 0.208 3.792 12 O -0.515 6.515 13 C -0.010 4.010 14 N -0.308 5.308 15 C 0.403 3.597 16 O -0.458 6.458 17 N -0.364 5.364 18 C 0.038 3.962 19 C -0.203 4.203 20 C -0.195 4.195 21 C 0.309 3.691 22 O -0.367 6.367 23 H 0.069 0.931 24 H 0.082 0.918 25 H 0.088 0.912 26 H 0.086 0.914 27 H 0.148 0.852 28 H 0.146 0.854 29 H 0.302 0.698 30 H 0.138 0.862 31 H 0.058 0.942 32 H 0.107 0.893 33 H 0.108 0.892 34 H 0.085 0.915 35 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 2.160 -16.943 -0.163 17.081 hybrid contribution 0.327 1.255 -0.327 1.337 sum 2.487 -15.688 -0.490 15.891 Atomic orbital electron populations 1.21580 0.78862 1.01420 1.01104 1.43785 1.07031 1.04322 1.62008 1.19546 1.00521 0.85941 1.41660 0.91403 1.26119 0.96985 1.02987 0.93988 1.70040 1.19453 1.31152 1.32261 0.85028 0.77984 0.76549 0.78938 1.19129 1.18959 1.20355 1.21022 0.88326 0.86436 0.83440 1.90470 1.15798 1.87739 1.57501 1.21407 0.90298 0.82258 1.07049 1.46018 1.43504 1.32278 1.09027 1.16065 0.79792 0.80414 0.83407 1.90950 1.64986 1.68060 1.21761 1.45564 1.47084 1.35872 1.07885 1.21657 0.97300 0.96619 0.80583 1.22054 0.91379 1.03397 1.03444 1.22040 1.03009 0.90984 1.03442 1.21675 0.80078 0.83076 0.84268 1.90747 1.60497 1.66427 1.19021 0.93140 0.91767 0.91209 0.91368 0.85182 0.85363 0.69843 0.86205 0.94150 0.89270 0.89158 0.91485 0.86637 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 5.06 8.44 127.77 1.08 6.14 16 2 N -0.45 -24.53 3.01 -658.89 -1.98 -26.51 16 3 C -0.35 -20.64 9.24 84.04 0.78 -19.86 16 4 H 0.07 4.31 7.45 -2.91 -0.02 4.29 16 5 C 0.00 0.10 5.04 84.93 0.43 0.53 16 6 N -0.89 -47.86 10.83 21.66 0.23 -47.63 16 7 Si 0.99 43.38 29.57 68.60 2.03 45.41 16 8 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 9 H -0.27 -10.76 7.11 99.48 0.71 -10.06 16 10 H -0.28 -12.35 7.11 99.48 0.71 -11.65 16 11 C 0.42 22.09 7.70 87.66 0.67 22.77 16 12 O -0.63 -37.94 16.14 -3.08 -0.05 -37.99 16 13 C 0.12 4.58 4.79 85.63 0.41 4.99 16 14 N -0.56 -20.92 2.09 -776.90 -1.62 -22.55 16 15 C 0.70 24.50 8.63 179.33 1.55 26.05 16 16 O -0.58 -24.28 17.48 -3.84 -0.07 -24.35 16 17 N -0.70 -15.95 5.93 -439.34 -2.61 -18.56 16 18 C 0.13 2.78 1.37 2.98 0.00 2.78 16 19 C -0.14 -2.74 8.98 71.98 0.65 -2.09 16 20 C -0.14 -1.72 8.98 71.98 0.65 -1.07 16 21 C 0.52 17.48 6.98 87.94 0.61 18.10 16 22 O -0.50 -19.33 17.76 -2.89 -0.05 -19.38 16 23 H 0.05 2.28 7.83 -2.38 -0.02 2.26 16 24 H 0.06 3.03 6.80 -2.39 -0.02 3.01 16 25 H 0.07 2.47 6.61 -2.39 -0.02 2.45 16 26 H 0.28 13.83 8.31 -92.71 -0.77 13.06 16 27 H 0.13 4.58 7.13 -2.38 -0.02 4.56 16 28 H 0.13 4.59 7.97 -2.39 -0.02 4.57 16 29 H 0.45 6.95 8.96 -92.71 -0.83 6.12 16 30 H 0.12 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.09 1.60 8.14 -2.39 -0.02 1.59 16 33 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 34 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 35 H 0.12 0.64 8.14 -2.39 -0.02 0.62 16 Total: -1.00 -81.83 304.20 3.00 -78.83 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: 0.29 Total: 14.41 kcal Atomic # 6 Polarization: 51.49 SS G_CDS: 6.83 Total: 58.32 kcal Atomic # 7 Polarization: -109.26 SS G_CDS: -5.98 Total: -115.24 kcal Atomic # 8 Polarization: -81.55 SS G_CDS: -0.17 Total: -81.72 kcal Atomic # 14 Polarization: 43.38 SS G_CDS: 2.03 Total: 45.41 kcal Total: -81.83 3.00 -78.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337555532.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.958 kcal (2) G-P(sol) polarization free energy of solvation -81.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds