Wall clock time and date at job start Mon Mar 30 2020 05:25:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86795 * 119.99808 * 2 1 4 4 H 1.48493 * 109.47128 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46907 * 299.99679 * 3 2 1 6 6 H 1.48496 * 109.47694 * 59.99286 * 3 2 1 7 7 C 1.38793 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00075 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00038 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00295 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47462 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99909 * 359.97438 * 11 10 9 13 13 N 1.34781 * 120.00051 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99775 * 179.97438 * 13 11 10 15 15 H 1.08996 * 109.47565 * 34.99894 * 14 13 11 16 16 C 1.53002 * 109.47037 * 274.99325 * 14 13 11 17 17 C 1.52997 * 109.47486 * 240.00101 * 16 14 13 18 18 C 1.52996 * 109.47210 * 300.00567 * 17 16 14 19 19 C 1.52999 * 109.47710 * 59.99353 * 18 17 16 20 20 C 1.52997 * 109.46953 * 154.99854 * 14 13 11 21 21 C 1.52997 * 109.47232 * 59.99845 * 20 14 13 22 22 C 1.53002 * 109.47415 * 60.00127 * 21 20 14 23 23 H 0.96996 * 120.00419 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.47102 * 59.99623 * 10 9 7 25 25 H 1.09005 * 109.46523 * 300.00234 * 10 9 7 26 26 H 0.97001 * 119.99650 * 359.97438 * 13 11 10 27 27 H 1.09006 * 109.46607 * 120.00102 * 16 14 13 28 28 H 1.09002 * 109.46905 * 0.02562 * 16 14 13 29 29 H 1.09001 * 109.47472 * 180.02562 * 17 16 14 30 30 H 1.09013 * 109.46815 * 299.99312 * 18 17 16 31 31 H 1.09000 * 109.47515 * 179.97438 * 18 17 16 32 32 H 1.08993 * 109.47839 * 240.00472 * 19 18 17 33 33 H 1.09000 * 109.47160 * 120.00034 * 19 18 17 34 34 H 1.09001 * 109.47289 * 299.99920 * 20 14 13 35 35 H 1.09000 * 109.47140 * 180.02562 * 21 20 14 36 36 H 1.09001 * 109.47230 * 299.99295 * 21 20 14 37 37 H 1.08994 * 109.47169 * 120.00003 * 22 21 20 38 38 H 1.09002 * 109.46905 * 240.00342 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3966 1.2123 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9875 -5.3027 -0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8443 -6.3431 0.0003 14 6 2.3306 -7.7150 0.0003 15 1 1.4151 -7.7602 -0.5895 16 6 2.0336 -8.1485 1.4373 17 6 2.8813 -9.3735 1.7860 18 6 2.5428 -10.5174 0.8280 19 6 2.8397 -10.0840 -0.6090 20 6 3.3763 -8.6511 -0.6089 21 6 4.6614 -8.5878 0.2188 22 6 4.3645 -9.0212 1.6558 23 1 -0.4850 0.8400 -0.0004 24 1 3.1245 -3.7313 0.8904 25 1 3.1245 -3.7312 -0.8895 26 1 3.8011 -6.1834 0.0006 27 1 0.9769 -8.3994 1.5300 28 1 2.2745 -7.3333 2.1197 29 1 2.6694 -9.6825 2.8096 30 1 1.4861 -10.7684 0.9208 31 1 3.1470 -11.3900 1.0761 32 1 1.9242 -10.1291 -1.1987 33 1 3.5847 -10.7509 -1.0430 34 1 3.5879 -8.3424 -1.6326 35 1 5.4066 -9.2543 -0.2154 36 1 5.0437 -7.5670 0.2188 37 1 4.9684 -9.8939 1.9042 38 1 4.6056 -8.2062 2.3383 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000351689032.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:59 Heat of formation + Delta-G solvation = -63.594818 kcal Electronic energy + Delta-G solvation = -18534.369716 eV Core-core repulsion = 15694.516656 eV Total energy + Delta-G solvation = -2839.853060 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.90291 -38.55051 -34.10457 -32.41442 -31.53353 -31.08174 -30.35649 -28.03087 -25.46519 -22.83963 -22.69611 -21.98355 -20.20103 -17.96541 -17.02830 -16.67397 -16.41742 -16.25069 -15.26143 -14.79603 -14.71448 -14.46270 -13.74127 -13.17653 -12.87770 -12.60279 -12.47257 -12.30380 -12.24314 -12.19845 -12.19083 -11.98281 -11.74830 -11.06167 -11.00362 -10.91549 -10.74196 -10.22945 -10.16889 -9.95398 -9.77429 -9.30380 -9.06316 -8.77416 -8.20810 -6.47912 -6.20445 -3.90615 3.08073 3.15703 3.22389 3.29509 3.34853 3.76882 4.21789 4.31848 4.43017 4.48801 4.94569 5.06362 5.08723 5.10550 5.14728 5.15368 5.18800 5.26764 5.29759 5.39896 5.42993 5.58854 5.67780 5.77202 5.83940 5.91916 5.96637 6.01905 6.09502 6.12808 6.16737 6.21381 6.24256 6.29066 6.78701 7.61164 7.79911 8.36780 8.69081 9.25008 10.87051 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.046274 B = 0.003675 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.939947 B = 7618.231355 C = 7835.300098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.868 5.868 2 C 0.073 3.927 3 Si 0.919 3.081 4 H -0.272 1.272 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.535 4.535 8 H 0.073 0.927 9 S -0.061 6.061 10 C -0.154 4.154 11 C 0.531 3.469 12 O -0.518 6.518 13 N -0.734 5.734 14 C 0.154 3.846 15 H 0.086 0.914 16 C -0.125 4.125 17 C -0.086 4.086 18 C -0.115 4.115 19 C -0.110 4.110 20 C -0.094 4.094 21 C -0.115 4.115 22 C -0.113 4.113 23 H 0.268 0.732 24 H 0.088 0.912 25 H 0.088 0.912 26 H 0.395 0.605 27 H 0.068 0.932 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.064 0.936 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.174 -20.233 1.121 22.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C -0.136 4.136 3 Si 0.745 3.255 4 H -0.196 1.196 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.683 4.683 8 H 0.091 0.909 9 S 0.166 5.834 10 C -0.304 4.304 11 C 0.317 3.683 12 O -0.392 6.392 13 N -0.389 5.389 14 C 0.049 3.951 15 H 0.104 0.896 16 C -0.163 4.163 17 C -0.105 4.105 18 C -0.152 4.152 19 C -0.148 4.148 20 C -0.113 4.113 21 C -0.152 4.152 22 C -0.151 4.151 23 H 0.077 0.923 24 H 0.106 0.894 25 H 0.107 0.893 26 H 0.230 0.770 27 H 0.087 0.913 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.081 0.919 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.094 0.906 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.001 -20.453 1.116 21.990 hybrid contribution 2.444 1.405 0.022 2.819 sum 10.444 -19.048 1.138 21.753 Atomic orbital electron populations 1.70031 1.05945 1.27318 1.47016 1.24991 0.95021 0.99021 0.94566 0.86118 0.79586 0.81905 0.77893 1.19629 1.20567 1.20574 1.22917 0.94944 0.91702 1.58750 0.90913 1.85391 1.05019 0.96301 1.96696 1.23536 1.06491 0.95598 1.04801 1.20298 0.86613 0.86288 0.75063 1.90692 1.15363 1.85587 1.47584 1.46228 1.09767 1.05318 1.77538 1.20832 0.97187 0.80676 0.96390 0.89563 1.22049 0.99989 0.97545 0.96746 1.21062 0.95101 0.95310 0.99008 1.21567 1.01358 0.97538 0.94766 1.21484 1.01107 0.95157 0.97057 1.21286 0.95156 0.95377 0.99447 1.21535 0.96798 1.01295 0.95595 1.21536 0.95877 1.01000 0.96677 0.92257 0.89351 0.89349 0.77001 0.91342 0.91131 0.91205 0.91854 0.92107 0.91663 0.91692 0.90576 0.91766 0.92014 0.92136 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -26.34 13.22 55.49 0.73 -25.60 16 2 C 0.07 2.10 5.49 -17.43 -0.10 2.01 16 3 Si 0.92 21.53 29.55 -169.99 -5.02 16.50 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 6 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 7 C -0.53 -15.37 9.50 30.94 0.29 -15.08 16 8 H 0.07 1.98 7.80 -52.48 -0.41 1.58 16 9 S -0.06 -1.67 20.57 -107.50 -2.21 -3.88 16 10 C -0.15 -3.15 6.16 36.00 0.22 -2.93 16 11 C 0.53 10.08 7.81 -10.99 -0.09 9.99 16 12 O -0.52 -11.90 15.53 5.56 0.09 -11.81 16 13 N -0.73 -10.12 4.83 -53.81 -0.26 -10.38 16 14 C 0.15 1.90 2.40 -67.93 -0.16 1.73 16 15 H 0.09 1.25 7.58 -51.93 -0.39 0.86 16 16 C -0.12 -1.47 5.48 -26.73 -0.15 -1.62 16 17 C -0.09 -0.78 3.19 -90.62 -0.29 -1.07 16 18 C -0.11 -0.92 5.71 -26.73 -0.15 -1.07 16 19 C -0.11 -0.90 5.71 -26.73 -0.15 -1.05 16 20 C -0.09 -0.87 2.88 -90.62 -0.26 -1.13 16 21 C -0.11 -0.93 5.54 -26.73 -0.15 -1.08 16 22 C -0.11 -0.94 5.71 -26.73 -0.15 -1.09 16 23 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 24 H 0.09 1.68 8.14 -51.92 -0.42 1.25 16 25 H 0.09 1.68 8.14 -51.91 -0.42 1.25 16 26 H 0.40 4.43 6.87 -40.82 -0.28 4.15 16 27 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.07 0.94 7.85 -51.93 -0.41 0.53 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.49 6.51 -51.93 -0.34 0.16 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 313.22 15.07 4.72 4.72 Total: -1.00 -33.30 313.22 -9.12 -42.42 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -6.04 Total: 0.41 kcal Atomic # 6 Polarization: -11.25 SS G_CDS: -1.13 Total: -12.38 kcal Atomic # 7 Polarization: -36.46 SS G_CDS: 0.47 Total: -35.99 kcal Atomic # 8 Polarization: -11.90 SS G_CDS: 0.09 Total: -11.81 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: -1.67 SS G_CDS: -2.21 Total: -3.88 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.30 -9.12 -42.42 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351689032.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.172 kcal (2) G-P(sol) polarization free energy of solvation -33.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.423 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds