Wall clock time and date at job start Mon Mar 30 2020 05:25:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31637 * 1 3 3 Si 1.86795 * 119.99808 * 2 1 4 4 H 1.48493 * 109.47128 * 179.97438 * 3 2 1 5 5 H 1.48507 * 109.46907 * 299.99679 * 3 2 1 6 6 H 1.48496 * 109.47694 * 59.99286 * 3 2 1 7 7 C 1.38793 * 120.00130 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00075 * 180.02562 * 7 2 1 9 9 S 1.76201 * 120.00038 * 0.02562 * 7 2 1 10 10 C 1.81001 * 100.00295 * 179.97438 * 9 7 2 11 11 C 1.50696 * 109.47462 * 180.02562 * 10 9 7 12 12 O 1.21281 * 119.99909 * 359.97438 * 11 10 9 13 13 N 1.34781 * 120.00051 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99775 * 179.97438 * 13 11 10 15 15 H 1.08996 * 109.47565 * 34.99894 * 14 13 11 16 16 C 1.53002 * 109.47037 * 274.99325 * 14 13 11 17 17 C 1.52997 * 109.47486 * 240.00101 * 16 14 13 18 18 C 1.52996 * 109.47210 * 300.00567 * 17 16 14 19 19 C 1.52999 * 109.47710 * 59.99353 * 18 17 16 20 20 C 1.52997 * 109.46953 * 154.99854 * 14 13 11 21 21 C 1.52997 * 109.47232 * 59.99845 * 20 14 13 22 22 C 1.53002 * 109.47415 * 60.00127 * 21 20 14 23 23 H 0.96996 * 120.00419 * 0.02562 * 1 2 3 24 24 H 1.08994 * 109.47102 * 59.99623 * 10 9 7 25 25 H 1.09005 * 109.46523 * 300.00234 * 10 9 7 26 26 H 0.97001 * 119.99650 * 359.97438 * 13 11 10 27 27 H 1.09006 * 109.46607 * 120.00102 * 16 14 13 28 28 H 1.09002 * 109.46905 * 0.02562 * 16 14 13 29 29 H 1.09001 * 109.47472 * 180.02562 * 17 16 14 30 30 H 1.09013 * 109.46815 * 299.99312 * 18 17 16 31 31 H 1.09000 * 109.47515 * 179.97438 * 18 17 16 32 32 H 1.08993 * 109.47839 * 240.00472 * 19 18 17 33 33 H 1.09000 * 109.47160 * 120.00034 * 19 18 17 34 34 H 1.09001 * 109.47289 * 299.99920 * 20 14 13 35 35 H 1.09000 * 109.47140 * 180.02562 * 21 20 14 36 36 H 1.09001 * 109.47230 * 299.99295 * 21 20 14 37 37 H 1.08994 * 109.47169 * 120.00003 * 22 21 20 38 38 H 1.09002 * 109.46905 * 240.00342 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3164 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3464 0.0006 5 1 1.8915 2.3964 -1.2126 6 1 1.8915 2.3966 1.2123 7 6 2.0104 -1.2020 0.0005 8 1 3.0904 -1.2020 0.0010 9 16 1.1294 -2.7279 0.0005 10 6 2.5159 -3.8914 0.0005 11 6 1.9875 -5.3027 -0.0001 12 8 0.7912 -5.5023 0.0000 13 7 2.8443 -6.3431 0.0003 14 6 2.3306 -7.7150 0.0003 15 1 1.4151 -7.7602 -0.5895 16 6 2.0336 -8.1485 1.4373 17 6 2.8813 -9.3735 1.7860 18 6 2.5428 -10.5174 0.8280 19 6 2.8397 -10.0840 -0.6090 20 6 3.3763 -8.6511 -0.6089 21 6 4.6614 -8.5878 0.2188 22 6 4.3645 -9.0212 1.6558 23 1 -0.4850 0.8400 -0.0004 24 1 3.1245 -3.7313 0.8904 25 1 3.1245 -3.7312 -0.8895 26 1 3.8011 -6.1834 0.0006 27 1 0.9769 -8.3994 1.5300 28 1 2.2745 -7.3333 2.1197 29 1 2.6694 -9.6825 2.8096 30 1 1.4861 -10.7684 0.9208 31 1 3.1470 -11.3900 1.0761 32 1 1.9242 -10.1291 -1.1987 33 1 3.5847 -10.7509 -1.0430 34 1 3.5879 -8.3424 -1.6326 35 1 5.4066 -9.2543 -0.2154 36 1 5.0437 -7.5670 0.2188 37 1 4.9684 -9.8939 1.9042 38 1 4.6056 -8.2062 2.3383 RHF calculation, no. of doubly occupied orbitals= 48 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000351689032.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:25:58 Heat of formation + Delta-G solvation = -84.807873 kcal Electronic energy + Delta-G solvation = -18535.289583 eV Core-core repulsion = 15694.516656 eV Total energy + Delta-G solvation = -2840.772927 eV No. of doubly occupied orbitals = 48 Molecular weight (most abundant/longest-lived isotopes) = 269.119 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -41.83496 -39.94486 -35.38579 -34.58991 -32.31643 -31.79056 -31.65446 -29.34206 -27.65415 -23.69528 -23.49120 -22.78717 -21.60030 -19.89874 -18.19605 -17.84703 -17.41417 -17.16517 -16.88880 -16.24178 -16.17970 -16.05431 -15.05545 -14.66594 -14.36846 -13.96399 -13.48889 -13.18120 -13.16764 -12.97524 -12.96677 -12.93672 -12.90904 -12.90128 -12.80950 -12.58365 -11.74021 -11.66117 -11.16425 -11.03091 -10.99881 -10.75738 -10.70069 -10.28127 -10.02142 -8.67664 -8.35365 -6.13723 1.26711 1.41255 1.46911 1.58281 1.61798 2.25758 2.30595 2.98844 3.31390 3.55306 3.67392 3.75020 3.97462 4.16665 4.26445 4.29702 4.37001 4.42060 4.43117 4.48786 4.53021 4.55620 4.58238 4.69498 4.81609 5.08868 5.12520 5.17818 5.31938 5.37520 5.40423 5.41368 5.45805 5.47718 5.52553 5.60081 6.19396 6.52294 7.05925 7.26220 8.74209 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.046274 B = 0.003675 C = 0.003573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.939947 B = 7618.231355 C = 7835.300098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 1.000 3.000 4 H -0.256 1.256 5 H -0.273 1.273 6 H -0.274 1.274 7 C -0.547 4.547 8 H 0.083 0.917 9 S -0.152 6.152 10 C -0.129 4.129 11 C 0.533 3.467 12 O -0.566 6.566 13 N -0.708 5.708 14 C 0.151 3.849 15 H 0.059 0.941 16 C -0.123 4.123 17 C -0.083 4.083 18 C -0.114 4.114 19 C -0.109 4.109 20 C -0.088 4.088 21 C -0.114 4.114 22 C -0.112 4.112 23 H 0.271 0.729 24 H 0.108 0.892 25 H 0.109 0.891 26 H 0.412 0.588 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.074 0.926 30 H 0.057 0.943 31 H 0.080 0.920 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.063 0.937 37 H 0.078 0.922 38 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.300 -21.169 1.064 25.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.191 4.191 3 Si 0.822 3.178 4 H -0.180 1.180 5 H -0.199 1.199 6 H -0.199 1.199 7 C -0.694 4.694 8 H 0.101 0.899 9 S 0.076 5.924 10 C -0.281 4.281 11 C 0.319 3.681 12 O -0.444 6.444 13 N -0.362 5.362 14 C 0.047 3.953 15 H 0.077 0.923 16 C -0.162 4.162 17 C -0.101 4.101 18 C -0.151 4.151 19 C -0.147 4.147 20 C -0.107 4.107 21 C -0.151 4.151 22 C -0.150 4.150 23 H 0.080 0.920 24 H 0.126 0.874 25 H 0.127 0.873 26 H 0.250 0.750 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.093 0.907 30 H 0.076 0.924 31 H 0.098 0.902 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.098 0.902 35 H 0.103 0.897 36 H 0.082 0.918 37 H 0.097 0.903 38 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 11.180 -21.430 1.060 24.194 hybrid contribution 1.475 1.574 0.049 2.157 sum 12.654 -19.856 1.109 23.571 Atomic orbital electron populations 1.70193 1.08002 1.28570 1.48057 1.26140 0.95970 1.03347 0.93690 0.84887 0.78597 0.76238 0.78104 1.18007 1.19875 1.19903 1.23244 0.95353 0.91999 1.58838 0.89930 1.85582 1.10579 0.99242 1.97040 1.23376 1.03542 0.94491 1.06650 1.20086 0.86326 0.86702 0.75020 1.90681 1.17414 1.86080 1.50235 1.46003 1.10054 1.04957 1.75186 1.20988 0.97467 0.80163 0.96728 0.92281 1.22000 0.99826 0.98498 0.95886 1.21051 0.95327 0.94142 0.99605 1.21573 1.01507 0.97667 0.94352 1.21511 1.01447 0.94580 0.97199 1.21273 0.94721 0.95137 0.99521 1.21568 0.96276 1.02018 0.95251 1.21547 0.95082 1.01645 0.96713 0.91979 0.87392 0.87304 0.75011 0.92930 0.92903 0.90723 0.92392 0.90159 0.92339 0.89568 0.90241 0.89722 0.91846 0.90293 0.92457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -56.50 13.22 21.65 0.29 -56.21 16 2 C 0.01 0.76 5.49 84.85 0.47 1.22 16 3 Si 1.00 43.87 29.55 68.60 2.03 45.90 16 4 H -0.26 -10.49 7.11 99.48 0.71 -9.78 16 5 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 6 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 7 C -0.55 -31.57 9.50 67.95 0.65 -30.92 16 8 H 0.08 4.43 7.80 -2.91 -0.02 4.41 16 9 S -0.15 -8.57 20.57 -56.49 -1.16 -9.73 16 10 C -0.13 -5.25 6.16 71.23 0.44 -4.82 16 11 C 0.53 20.37 7.81 87.66 0.68 21.06 16 12 O -0.57 -27.07 15.53 -3.03 -0.05 -27.12 16 13 N -0.71 -18.95 4.83 -442.54 -2.14 -21.09 16 14 C 0.15 3.67 2.40 44.99 0.11 3.77 16 15 H 0.06 1.78 7.58 -2.39 -0.02 1.76 16 16 C -0.12 -2.92 5.48 30.59 0.17 -2.75 16 17 C -0.08 -1.35 3.19 -10.80 -0.03 -1.39 16 18 C -0.11 -1.56 5.71 30.59 0.17 -1.39 16 19 C -0.11 -1.52 5.71 30.60 0.17 -1.34 16 20 C -0.09 -1.43 2.88 -10.79 -0.03 -1.46 16 21 C -0.11 -1.46 5.54 30.59 0.17 -1.29 16 22 C -0.11 -1.52 5.71 30.60 0.17 -1.35 16 23 H 0.27 15.53 8.31 -92.71 -0.77 14.76 16 24 H 0.11 3.96 8.14 -2.40 -0.02 3.94 16 25 H 0.11 3.98 8.14 -2.39 -0.02 3.96 16 26 H 0.41 8.34 6.87 -92.71 -0.64 7.71 16 27 H 0.05 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.05 1.42 7.85 -2.39 -0.02 1.40 16 29 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 30 H 0.06 0.86 8.14 -2.38 -0.02 0.84 16 31 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 32 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.09 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 35 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 36 H 0.06 0.80 6.51 -2.39 -0.02 0.78 16 37 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -74.72 313.22 2.51 -72.20 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.41 Total: 16.71 kcal Atomic # 6 Polarization: -23.80 SS G_CDS: 3.14 Total: -20.66 kcal Atomic # 7 Polarization: -75.45 SS G_CDS: -1.85 Total: -77.30 kcal Atomic # 8 Polarization: -27.07 SS G_CDS: -0.05 Total: -27.12 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: -8.57 SS G_CDS: -1.16 Total: -9.73 kcal Total: -74.72 2.51 -72.20 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000351689032.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.605 kcal (2) G-P(sol) polarization free energy of solvation -74.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.320 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.512 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds