Wall clock time and date at job start Mon Mar 30 2020 04:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.20762 * 120.00073 * 2 1 4 4 C 1.50699 * 120.00086 * 179.97438 * 2 1 3 5 5 H 1.09002 * 109.46959 * 35.00131 * 4 2 1 6 6 C 1.53000 * 109.47083 * 274.99916 * 4 2 1 7 7 C 1.52997 * 109.47078 * 155.00042 * 4 2 1 8 8 S 1.81000 * 109.47139 * 185.00057 * 7 4 2 9 9 C 1.76202 * 100.00132 * 180.02562 * 8 7 4 10 10 N 1.32390 * 126.25735 * 0.02562 * 9 8 7 11 11 N 1.28517 * 110.20150 * 179.97438 * 10 9 8 12 12 C 1.33099 * 109.74661 * 0.02562 * 11 10 9 13 13 C 1.39783 * 126.56294 * 179.97438 * 12 11 10 14 14 H 1.07996 * 119.99467 * 180.02562 * 13 12 11 15 15 C 1.40077 * 120.00033 * 0.02562 * 13 12 11 16 16 N 1.30818 * 119.99907 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00096 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47113 * 90.00340 * 17 15 13 19 19 H 1.48496 * 109.47263 * 210.00412 * 17 15 13 20 20 H 1.48505 * 109.47076 * 330.00311 * 17 15 13 21 21 N 1.36668 * 126.25918 * 179.71481 * 9 8 7 22 22 C 1.46503 * 127.15240 * 0.03505 * 21 9 8 23 23 H 1.08993 * 109.47442 * 269.99971 * 1 2 3 24 24 H 1.09001 * 109.46998 * 29.99895 * 1 2 3 25 25 H 1.08998 * 109.47296 * 149.99982 * 1 2 3 26 26 H 1.09004 * 109.46724 * 60.00424 * 6 4 2 27 27 H 1.09001 * 109.47194 * 179.97438 * 6 4 2 28 28 H 1.08992 * 109.47399 * 299.99938 * 6 4 2 29 29 H 1.09001 * 109.47630 * 305.00104 * 7 4 2 30 30 H 1.09004 * 109.47346 * 65.00234 * 7 4 2 31 31 H 0.97002 * 119.99859 * 179.97438 * 16 15 13 32 32 H 1.08989 * 109.47725 * 90.02306 * 22 21 9 33 33 H 1.09006 * 109.47077 * 210.03045 * 22 21 9 34 34 H 1.09003 * 109.46719 * 330.02130 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 1 1.7131 -2.0409 -0.5886 6 6 2.4066 -1.8089 1.4378 7 6 3.6476 -1.0933 -0.6091 8 16 4.4969 -2.6860 -0.7441 9 6 6.0216 -2.1606 -1.4539 10 7 6.3536 -0.9170 -1.7639 11 7 7.5376 -0.8850 -2.2627 12 6 8.0416 -2.1162 -2.3042 13 6 9.3030 -2.4840 -2.7811 14 1 9.6050 -3.5207 -2.7653 15 6 10.1753 -1.5078 -3.2794 16 7 9.8096 -0.2519 -3.2980 17 14 11.8608 -1.9994 -3.9173 18 1 11.7714 -2.3046 -5.3678 19 1 12.8157 -0.8823 -3.7046 20 1 12.3352 -3.2021 -3.1867 21 7 7.0800 -2.9615 -1.7797 22 6 7.1752 -4.4138 -1.6121 23 1 -0.3634 0.0000 1.0276 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3634 -0.8900 -0.5138 26 1 1.4183 -1.9599 1.8721 27 1 2.9512 -2.7531 1.4382 28 1 2.9539 -1.0732 2.0269 29 1 3.5454 -0.6510 -1.6001 30 1 4.2269 -0.4257 0.0288 31 1 10.4139 0.4241 -3.6427 32 1 6.8081 -4.9082 -2.5113 33 1 8.2153 -4.6927 -1.4429 34 1 6.5730 -4.7210 -0.7570 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000357080041.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:16 Heat of formation + Delta-G solvation = 18.038932 kcal Electronic energy + Delta-G solvation = -17836.012902 eV Core-core repulsion = 14896.159404 eV Total energy + Delta-G solvation = -2939.853498 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.48176 -39.67509 -34.63126 -33.67804 -33.28304 -30.25362 -29.32854 -27.33693 -26.41909 -25.46231 -23.28858 -20.83648 -20.46149 -19.15555 -17.34452 -16.54676 -16.06271 -15.40889 -15.37054 -14.97087 -14.72320 -14.34697 -14.04720 -13.40864 -13.22454 -12.94344 -12.58292 -12.37402 -12.26952 -12.17274 -12.12665 -11.42912 -11.34668 -11.27561 -11.22130 -10.92220 -10.39131 -10.23671 -9.68595 -9.61787 -9.54688 -8.67857 -8.40890 -8.35307 -6.82716 -6.63227 -4.56250 1.85421 2.07807 2.81068 2.92787 3.07018 3.10759 3.37836 3.88058 4.01475 4.25655 4.44773 4.58508 4.85265 4.90487 5.17959 5.21008 5.34189 5.34945 5.55133 5.59462 5.66589 5.77849 5.87755 5.89031 6.04106 6.09473 6.25828 6.79267 6.90258 7.25728 7.44944 7.50076 7.91202 8.19004 8.71539 8.87526 10.29336 10.66549 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.037740 B = 0.004210 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.750074 B = 6648.988646 C = 7244.391087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.361 3.639 3 O -0.446 6.446 4 C -0.127 4.127 5 H 0.103 0.897 6 C -0.142 4.142 7 C -0.080 4.080 8 S -0.055 6.055 9 C 0.045 3.955 10 N -0.283 5.283 11 N -0.333 5.333 12 C 0.346 3.654 13 C -0.448 4.448 14 H 0.084 0.916 15 C 0.078 3.922 16 N -0.736 5.736 17 Si 0.921 3.079 18 H -0.269 1.269 19 H -0.275 1.275 20 H -0.263 1.263 21 N -0.516 5.516 22 C 0.102 3.898 23 H 0.094 0.906 24 H 0.085 0.915 25 H 0.085 0.915 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.063 0.937 29 H 0.091 0.909 30 H 0.098 0.902 31 H 0.279 0.721 32 H 0.055 0.945 33 H 0.077 0.923 34 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.216 -6.747 5.904 15.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.259 4.259 2 C 0.233 3.767 3 O -0.318 6.318 4 C -0.147 4.147 5 H 0.122 0.878 6 C -0.200 4.200 7 C -0.229 4.229 8 S 0.173 5.827 9 C -0.327 4.327 10 N -0.129 5.129 11 N -0.181 5.181 12 C 0.102 3.898 13 C -0.488 4.488 14 H 0.102 0.898 15 C -0.148 4.148 16 N -0.360 5.360 17 Si 0.745 3.255 18 H -0.194 1.194 19 H -0.200 1.200 20 H -0.187 1.187 21 N -0.218 5.218 22 C -0.043 4.043 23 H 0.113 0.887 24 H 0.103 0.897 25 H 0.104 0.896 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.082 0.918 29 H 0.109 0.891 30 H 0.116 0.884 31 H 0.090 0.910 32 H 0.074 0.926 33 H 0.096 0.904 34 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.326 -5.512 6.003 15.620 hybrid contribution 1.391 -0.579 -0.621 1.630 sum -11.935 -6.091 5.382 14.440 Atomic orbital electron populations 1.22287 0.94220 1.04832 1.04540 1.24558 0.91793 0.89852 0.70469 1.90463 1.71933 1.34878 1.34543 1.21594 0.95803 0.97733 0.99612 0.87844 1.21773 1.02326 1.02727 0.93146 1.23188 0.96083 0.98029 1.05612 1.84099 1.07483 1.12152 1.79013 1.25304 0.96145 0.92275 1.18983 1.74576 1.10687 1.14643 1.12957 1.75477 1.01218 1.15847 1.25531 1.21641 0.90548 0.84650 0.93001 1.18103 0.95614 0.95582 1.39495 0.89791 1.25804 1.00155 0.94302 0.94509 1.70018 1.35349 1.00890 1.29747 0.86114 0.80518 0.79216 0.79647 1.19374 1.19985 1.18658 1.46041 1.13737 1.07119 1.54942 1.21483 1.02913 0.78938 1.00954 0.88712 0.89658 0.89602 0.91932 0.90325 0.91751 0.89062 0.88377 0.90959 0.92606 0.90392 0.91558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.48 10.25 36.00 0.37 -1.11 16 2 C 0.36 4.26 6.38 -29.04 -0.19 4.07 16 3 O -0.45 -7.35 16.94 6.00 0.10 -7.25 16 4 C -0.13 -1.47 2.64 -91.77 -0.24 -1.71 16 5 H 0.10 0.97 8.10 -51.93 -0.42 0.55 16 6 C -0.14 -1.42 9.00 37.16 0.33 -1.08 16 7 C -0.08 -1.34 4.11 37.16 0.15 -1.18 16 8 S -0.05 -0.98 20.59 -107.50 -2.21 -3.20 16 9 C 0.04 1.10 8.09 -87.28 -0.71 0.39 16 10 N -0.28 -8.08 11.62 30.89 0.36 -7.72 16 11 N -0.33 -10.34 10.48 31.26 0.33 -10.01 16 12 C 0.35 9.89 7.53 -154.81 -1.17 8.73 16 13 C -0.45 -12.06 9.05 -38.31 -0.35 -12.40 16 14 H 0.08 2.04 7.31 -52.49 -0.38 1.65 16 15 C 0.08 2.02 5.50 -17.29 -0.10 1.93 16 16 N -0.74 -20.65 11.94 55.56 0.66 -19.99 16 17 Si 0.92 18.75 29.56 -169.99 -5.03 13.73 16 18 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 19 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 20 H -0.26 -5.15 7.11 56.52 0.40 -4.75 16 21 N -0.52 -12.72 3.26 -123.17 -0.40 -13.12 16 22 C 0.10 1.88 10.87 59.85 0.65 2.53 16 23 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 25 H 0.09 0.45 8.08 -51.93 -0.42 0.03 16 26 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.08 0.81 7.13 -51.93 -0.37 0.44 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 1.69 8.14 -51.92 -0.42 1.27 16 30 H 0.10 1.88 8.03 -51.91 -0.42 1.46 16 31 H 0.28 7.06 8.30 -40.82 -0.34 6.73 16 32 H 0.06 0.94 8.14 -51.94 -0.42 0.51 16 33 H 0.08 1.35 7.54 -51.93 -0.39 0.96 16 34 H 0.07 1.06 7.85 -51.93 -0.41 0.66 16 LS Contribution 310.30 15.07 4.68 4.68 Total: -1.00 -35.40 310.30 -7.23 -42.63 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -4.48 Total: 0.08 kcal Atomic # 6 Polarization: 1.40 SS G_CDS: -1.23 Total: 0.17 kcal Atomic # 7 Polarization: -51.79 SS G_CDS: 0.95 Total: -50.84 kcal Atomic # 8 Polarization: -7.35 SS G_CDS: 0.10 Total: -7.25 kcal Atomic # 14 Polarization: 18.75 SS G_CDS: -5.03 Total: 13.73 kcal Atomic # 16 Polarization: -0.98 SS G_CDS: -2.21 Total: -3.20 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -35.40 -7.23 -42.63 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357080041.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.671 kcal (2) G-P(sol) polarization free energy of solvation -35.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds