Wall clock time and date at job start Mon Mar 30 2020 04:50:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 O 1.20762 * 120.00073 * 2 1 4 4 C 1.50699 * 120.00086 * 179.97438 * 2 1 3 5 5 H 1.09002 * 109.46959 * 35.00131 * 4 2 1 6 6 C 1.53000 * 109.47083 * 274.99916 * 4 2 1 7 7 C 1.52997 * 109.47078 * 155.00042 * 4 2 1 8 8 S 1.81000 * 109.47139 * 185.00057 * 7 4 2 9 9 C 1.76202 * 100.00132 * 180.02562 * 8 7 4 10 10 N 1.32390 * 126.25735 * 0.02562 * 9 8 7 11 11 N 1.28517 * 110.20150 * 179.97438 * 10 9 8 12 12 C 1.33099 * 109.74661 * 0.02562 * 11 10 9 13 13 C 1.39783 * 126.56294 * 179.97438 * 12 11 10 14 14 H 1.07996 * 119.99467 * 180.02562 * 13 12 11 15 15 C 1.40077 * 120.00033 * 0.02562 * 13 12 11 16 16 N 1.30818 * 119.99907 * 0.02562 * 15 13 12 17 17 Si 1.86796 * 120.00096 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47113 * 90.00340 * 17 15 13 19 19 H 1.48496 * 109.47263 * 210.00412 * 17 15 13 20 20 H 1.48505 * 109.47076 * 330.00311 * 17 15 13 21 21 N 1.36668 * 126.25918 * 179.71481 * 9 8 7 22 22 C 1.46503 * 127.15240 * 0.03505 * 21 9 8 23 23 H 1.08993 * 109.47442 * 269.99971 * 1 2 3 24 24 H 1.09001 * 109.46998 * 29.99895 * 1 2 3 25 25 H 1.08998 * 109.47296 * 149.99982 * 1 2 3 26 26 H 1.09004 * 109.46724 * 60.00424 * 6 4 2 27 27 H 1.09001 * 109.47194 * 179.97438 * 6 4 2 28 28 H 1.08992 * 109.47399 * 299.99938 * 6 4 2 29 29 H 1.09001 * 109.47630 * 305.00104 * 7 4 2 30 30 H 1.09004 * 109.47346 * 65.00234 * 7 4 2 31 31 H 0.97002 * 119.99859 * 179.97438 * 16 15 13 32 32 H 1.08989 * 109.47725 * 90.02306 * 22 21 9 33 33 H 1.09006 * 109.47077 * 210.03045 * 22 21 9 34 34 H 1.09003 * 109.46719 * 330.02130 * 22 21 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1108 1.0458 0.0000 4 6 2.2605 -1.3051 0.0006 5 1 1.7131 -2.0409 -0.5886 6 6 2.4066 -1.8089 1.4378 7 6 3.6476 -1.0933 -0.6091 8 16 4.4969 -2.6860 -0.7441 9 6 6.0216 -2.1606 -1.4539 10 7 6.3536 -0.9170 -1.7639 11 7 7.5376 -0.8850 -2.2627 12 6 8.0416 -2.1162 -2.3042 13 6 9.3030 -2.4840 -2.7811 14 1 9.6050 -3.5207 -2.7653 15 6 10.1753 -1.5078 -3.2794 16 7 9.8096 -0.2519 -3.2980 17 14 11.8608 -1.9994 -3.9173 18 1 11.7714 -2.3046 -5.3678 19 1 12.8157 -0.8823 -3.7046 20 1 12.3352 -3.2021 -3.1867 21 7 7.0800 -2.9615 -1.7797 22 6 7.1752 -4.4138 -1.6121 23 1 -0.3634 0.0000 1.0276 24 1 -0.3633 0.8900 -0.5138 25 1 -0.3634 -0.8900 -0.5138 26 1 1.4183 -1.9599 1.8721 27 1 2.9512 -2.7531 1.4382 28 1 2.9539 -1.0732 2.0269 29 1 3.5454 -0.6510 -1.6001 30 1 4.2269 -0.4257 0.0288 31 1 10.4139 0.4241 -3.6427 32 1 6.8081 -4.9082 -2.5113 33 1 8.2153 -4.6927 -1.4429 34 1 6.5730 -4.7210 -0.7570 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000357080041.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:50:16 Heat of formation + Delta-G solvation = -5.341524 kcal Electronic energy + Delta-G solvation = -17837.026755 eV Core-core repulsion = 14896.159404 eV Total energy + Delta-G solvation = -2940.867351 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -42.47768 -40.70502 -35.74034 -35.62544 -35.12749 -31.38230 -30.97794 -28.63178 -28.02039 -27.33588 -24.28746 -22.82763 -22.35296 -20.16622 -19.27626 -17.92684 -17.47402 -17.12610 -16.64739 -16.34926 -16.11818 -15.98326 -15.19066 -15.09549 -14.58000 -14.07592 -13.90949 -13.80792 -13.50035 -13.13614 -13.00967 -12.95751 -12.90654 -12.78351 -12.39463 -12.24040 -12.00947 -11.80260 -11.67527 -11.45634 -10.62008 -10.53799 -10.37274 -10.29194 -8.55917 -8.54180 -6.61473 0.41033 0.99262 1.17727 1.19714 1.40424 1.57665 1.60597 2.17374 2.42803 2.49806 3.15660 3.32254 3.51250 3.78438 4.07172 4.14050 4.37665 4.45325 4.46947 4.61363 4.67099 4.73529 4.75574 4.86516 4.89157 4.93825 5.01525 5.21217 5.29743 5.31222 5.53939 6.01858 6.20081 6.55649 6.73646 6.90902 8.39768 8.62445 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.037740 B = 0.004210 C = 0.003864 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.750074 B = 6648.988646 C = 7244.391087 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.363 3.637 3 O -0.507 6.507 4 C -0.123 4.123 5 H 0.139 0.861 6 C -0.141 4.141 7 C -0.083 4.083 8 S 0.021 5.979 9 C 0.049 3.951 10 N -0.338 5.338 11 N -0.393 5.393 12 C 0.316 3.684 13 C -0.472 4.472 14 H 0.106 0.894 15 C 0.027 3.973 16 N -0.791 5.791 17 Si 1.010 2.990 18 H -0.260 1.260 19 H -0.272 1.272 20 H -0.245 1.245 21 N -0.521 5.521 22 C 0.093 3.907 23 H 0.121 0.879 24 H 0.082 0.918 25 H 0.117 0.883 26 H 0.103 0.897 27 H 0.078 0.922 28 H 0.045 0.955 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.284 0.716 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.667 -9.861 6.524 18.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.250 4.250 2 C 0.240 3.760 3 O -0.383 6.383 4 C -0.144 4.144 5 H 0.157 0.843 6 C -0.198 4.198 7 C -0.233 4.233 8 S 0.248 5.752 9 C -0.325 4.325 10 N -0.182 5.182 11 N -0.239 5.239 12 C 0.069 3.931 13 C -0.512 4.512 14 H 0.124 0.876 15 C -0.194 4.194 16 N -0.416 5.416 17 Si 0.828 3.172 18 H -0.185 1.185 19 H -0.197 1.197 20 H -0.168 1.168 21 N -0.223 5.223 22 C -0.050 4.050 23 H 0.139 0.861 24 H 0.101 0.899 25 H 0.135 0.865 26 H 0.122 0.878 27 H 0.096 0.904 28 H 0.064 0.936 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.094 0.906 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -14.802 -8.668 6.634 18.391 hybrid contribution 1.635 0.313 -0.721 1.814 sum -13.167 -8.355 5.912 16.677 Atomic orbital electron populations 1.22314 0.89843 1.06266 1.06545 1.25268 0.94039 0.88707 0.68030 1.90468 1.73485 1.36713 1.37646 1.21765 0.92591 0.99038 1.00960 0.84275 1.21807 1.04553 1.01793 0.91661 1.23275 0.98905 0.97074 1.04015 1.83693 1.02839 1.11528 1.77127 1.26613 0.98417 0.91722 1.15750 1.74452 1.10853 1.17126 1.15783 1.75320 1.02621 1.18197 1.27759 1.22094 0.91952 0.84993 0.94014 1.18658 0.95577 0.96981 1.39963 0.87620 1.27061 1.04763 0.93742 0.93821 1.70183 1.37485 1.02650 1.31273 0.84808 0.73995 0.79250 0.79107 1.18472 1.19667 1.16822 1.46398 1.12778 1.09194 1.53947 1.21883 1.04510 0.75483 1.03108 0.86131 0.89922 0.86481 0.87816 0.90365 0.93578 0.91586 0.91723 0.90570 0.90621 0.89315 0.88801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.15 10.25 71.23 0.73 -1.42 16 2 C 0.36 8.11 6.38 29.10 0.19 8.30 16 3 O -0.51 -17.31 16.94 -1.46 -0.02 -17.33 16 4 C -0.12 -2.60 2.64 -11.54 -0.03 -2.63 16 5 H 0.14 2.00 8.10 -2.39 -0.02 1.98 16 6 C -0.14 -2.41 9.00 71.98 0.65 -1.76 16 7 C -0.08 -2.82 4.11 71.98 0.30 -2.52 16 8 S 0.02 0.73 20.59 -56.49 -1.16 -0.44 16 9 C 0.05 2.44 8.09 179.18 1.45 3.89 16 10 N -0.34 -20.38 11.62 -56.17 -0.65 -21.03 16 11 N -0.39 -25.76 10.48 -55.01 -0.58 -26.34 16 12 C 0.32 18.68 7.53 133.23 1.00 19.68 16 13 C -0.47 -25.82 9.05 23.09 0.21 -25.61 16 14 H 0.11 5.07 7.31 -2.91 -0.02 5.05 16 15 C 0.03 1.40 5.50 85.29 0.47 1.87 16 16 N -0.79 -46.41 11.94 21.85 0.26 -46.15 16 17 Si 1.01 38.49 29.56 68.60 2.03 40.52 16 18 H -0.26 -9.48 7.11 99.48 0.71 -8.78 16 19 H -0.27 -10.10 7.11 99.48 0.71 -9.40 16 20 H -0.25 -8.56 7.11 99.48 0.71 -7.85 16 21 N -0.52 -25.84 3.26 -543.61 -1.77 -27.61 16 22 C 0.09 3.23 10.87 127.77 1.39 4.62 16 23 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 24 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 25 H 0.12 0.62 8.08 -2.39 -0.02 0.60 16 26 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.08 1.36 7.13 -2.39 -0.02 1.34 16 28 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 30 H 0.06 2.63 8.03 -2.39 -0.02 2.61 16 31 H 0.28 15.05 8.30 -92.71 -0.77 14.29 16 32 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.09 2.90 7.54 -2.38 -0.02 2.88 16 34 H 0.09 2.72 7.85 -2.39 -0.02 2.70 16 Total: -1.00 -85.51 310.30 5.55 -79.96 By element: Atomic # 1 Polarization: 12.90 SS G_CDS: 1.10 Total: 14.01 kcal Atomic # 6 Polarization: -1.93 SS G_CDS: 6.35 Total: 4.42 kcal Atomic # 7 Polarization: -118.39 SS G_CDS: -2.74 Total: -121.13 kcal Atomic # 8 Polarization: -17.31 SS G_CDS: -0.02 Total: -17.33 kcal Atomic # 14 Polarization: 38.49 SS G_CDS: 2.03 Total: 40.52 kcal Atomic # 16 Polarization: 0.73 SS G_CDS: -1.16 Total: -0.44 kcal Total: -85.51 5.55 -79.96 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000357080041.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.618 kcal (2) G-P(sol) polarization free energy of solvation -85.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.960 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds