Wall clock time and date at job start Mon Mar 30 2020 04:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80997 * 1 3 3 C 1.76207 * 99.99802 * 2 1 4 4 C 1.39400 * 126.46505 * 95.00203 * 3 2 1 5 5 C 1.46726 * 126.52175 * 359.97438 * 4 3 2 6 6 O 1.21699 * 119.99571 * 359.71155 * 5 4 3 7 7 N 1.34777 * 119.99882 * 179.71674 * 5 4 3 8 8 C 1.46496 * 119.99613 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.46846 * 179.97438 * 8 7 5 10 10 C 1.50706 * 109.47339 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99782 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00098 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00197 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00072 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47258 * 59.99826 * 14 12 10 16 16 H 1.48491 * 109.47483 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46998 * 300.00223 * 14 12 10 18 18 C 1.41473 * 106.95269 * 179.71256 * 4 3 2 19 19 N 1.30270 * 108.22293 * 0.26366 * 18 4 3 20 20 N 1.34964 * 126.45792 * 275.16482 * 3 2 1 21 21 C 1.46496 * 125.75950 * 359.97438 * 20 3 2 22 22 H 1.09001 * 109.47359 * 59.99953 * 1 2 3 23 23 H 1.09001 * 109.47136 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47192 * 300.00324 * 1 2 3 25 25 H 0.96996 * 119.99871 * 359.97438 * 7 5 4 26 26 H 1.09002 * 109.47226 * 299.99334 * 8 7 5 27 27 H 1.08999 * 109.47406 * 59.99933 * 8 7 5 28 28 H 1.08995 * 109.47938 * 299.99929 * 9 8 7 29 29 H 1.09004 * 109.47171 * 59.99908 * 9 8 7 30 30 H 0.97003 * 119.99593 * 180.02562 * 13 12 10 31 31 H 1.08000 * 125.88671 * 180.23725 * 18 4 3 32 32 H 1.08999 * 109.47062 * 270.31658 * 21 20 3 33 33 H 1.09005 * 109.46896 * 30.31886 * 21 20 3 34 34 H 1.09002 * 109.47238 * 150.31472 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 6 2.3560 2.5343 1.1168 5 6 2.4014 2.0903 2.5146 6 8 2.2133 0.9193 2.7874 7 7 2.6513 2.9794 3.4962 8 6 2.6972 2.5360 4.8917 9 6 2.9966 3.7323 5.7972 10 6 3.0432 3.2764 7.2329 11 1 2.8764 2.2371 7.4752 12 6 3.2988 4.1859 8.2371 13 7 3.5014 5.4514 7.9422 14 14 3.3573 3.6206 10.0166 15 1 4.4240 2.6000 10.1770 16 1 3.6477 4.7817 10.8955 17 1 2.0472 3.0306 10.3918 18 6 2.5536 3.8535 0.6455 19 7 2.4348 3.8447 -0.6517 20 7 2.1589 2.5421 -1.0811 21 6 1.9581 2.1232 -2.4705 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 2.8015 3.9126 3.2786 26 1 1.7356 2.1030 5.1672 27 1 3.4801 1.7868 5.0093 28 1 3.9583 4.1650 5.5218 29 1 2.2140 4.4818 5.6797 30 1 3.6816 6.0912 8.6487 31 1 2.7659 4.7187 1.2560 32 1 2.9155 1.8366 -2.9055 33 1 1.2770 1.2726 -2.4986 34 1 1.5322 2.9486 -3.0409 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000359859225.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:17 Heat of formation + Delta-G solvation = 36.015592 kcal Electronic energy + Delta-G solvation = -17718.313512 eV Core-core repulsion = 14779.239541 eV Total energy + Delta-G solvation = -2939.073972 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.34781 -38.65369 -34.74249 -33.71727 -32.72813 -30.69946 -29.56588 -29.06340 -27.27814 -24.80646 -22.76381 -21.50495 -20.85839 -19.96639 -18.18890 -16.61888 -16.21226 -15.97551 -15.36498 -14.88997 -14.64253 -14.59300 -14.43251 -13.99471 -13.61234 -13.22671 -13.21324 -12.86436 -12.75488 -12.60456 -12.24886 -11.39316 -11.16241 -10.98657 -10.91086 -10.62367 -10.26415 -9.74381 -9.65595 -9.43783 -9.18552 -8.81999 -8.45473 -8.23574 -7.79477 -6.05862 -4.08449 0.83830 1.28380 2.09617 2.17557 2.43139 3.33849 3.37559 3.40660 3.75666 3.79337 4.26557 4.46068 4.74475 4.80621 4.85673 4.93159 5.02118 5.06429 5.16059 5.31171 5.52150 5.60055 6.17972 6.36214 6.42351 6.44992 6.80577 7.01537 7.27139 7.56933 7.66940 7.92804 8.12469 8.32831 8.78087 8.97578 9.56136 11.05733 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.035451 B = 0.003688 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.623326 B = 7591.101905 C = 8227.805765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 S -0.035 6.035 3 C 0.091 3.909 4 C -0.230 4.230 5 C 0.575 3.425 6 O -0.532 6.532 7 N -0.718 5.718 8 C 0.125 3.875 9 C 0.012 3.988 10 C -0.521 4.521 11 H 0.059 0.941 12 C 0.059 3.941 13 N -0.895 5.895 14 Si 0.897 3.103 15 H -0.276 1.276 16 H -0.287 1.287 17 H -0.276 1.276 18 C 0.076 3.924 19 N -0.281 5.281 20 N -0.343 5.343 21 C 0.094 3.906 22 H 0.074 0.926 23 H 0.109 0.891 24 H 0.088 0.912 25 H 0.395 0.605 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.023 0.977 29 H 0.022 0.978 30 H 0.262 0.738 31 H 0.197 0.803 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.097 -6.209 -21.275 22.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.316 4.316 2 S 0.192 5.808 3 C -0.150 4.150 4 C -0.248 4.248 5 C 0.360 3.640 6 O -0.410 6.410 7 N -0.368 5.368 8 C 0.003 3.997 9 C -0.025 4.025 10 C -0.560 4.560 11 H 0.077 0.923 12 C -0.143 4.143 13 N -0.534 5.534 14 Si 0.724 3.276 15 H -0.201 1.201 16 H -0.213 1.213 17 H -0.201 1.201 18 C -0.111 4.111 19 N -0.103 5.103 20 N -0.125 5.125 21 C -0.048 4.048 22 H 0.093 0.907 23 H 0.128 0.872 24 H 0.107 0.893 25 H 0.228 0.772 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.041 0.959 29 H 0.041 0.959 30 H 0.072 0.928 31 H 0.214 0.786 32 H 0.102 0.898 33 H 0.111 0.889 34 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -4.467 -7.120 -22.186 23.725 hybrid contribution -0.664 1.039 1.568 1.995 sum -5.131 -6.081 -20.617 22.099 Atomic orbital electron populations 1.23637 0.95266 1.07080 1.05642 1.85789 1.05914 0.93038 1.96061 1.23499 1.05110 0.97566 0.88812 1.20769 1.16267 0.93139 0.94642 1.17034 0.77713 0.85915 0.83352 1.90833 1.49925 1.16656 1.83565 1.46123 1.71473 1.11272 1.07883 1.21701 1.00804 0.99669 0.77535 1.19326 0.97458 0.92144 0.93609 1.21025 1.48991 0.95004 0.90963 0.92277 1.24989 0.95078 0.94855 0.99348 1.69948 1.48360 1.01960 1.33090 0.86579 0.78697 0.78082 0.84213 1.20111 1.21293 1.20129 1.24188 0.97714 0.97409 0.91773 1.77021 1.21996 0.97555 1.13725 1.48960 1.51764 1.05172 1.06609 1.22009 1.03705 1.01962 0.77075 0.90700 0.87199 0.89339 0.77194 0.92535 0.92464 0.95911 0.95949 0.92829 0.78615 0.89779 0.88942 0.88696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.50 101.05 1.06 -0.29 16 2 S -0.04 -0.43 20.68 -107.50 -2.22 -2.66 16 3 C 0.09 1.26 6.70 -15.74 -0.11 1.15 16 4 C -0.23 -3.53 6.15 -104.81 -0.64 -4.18 16 5 C 0.57 10.44 7.79 -12.83 -0.10 10.34 16 6 O -0.53 -11.10 15.51 5.19 0.08 -11.02 16 7 N -0.72 -12.94 5.55 -61.61 -0.34 -13.28 16 8 C 0.13 2.68 5.61 -4.05 -0.02 2.66 16 9 C 0.01 0.30 5.09 -27.88 -0.14 0.16 16 10 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 11 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.89 -26.20 13.29 55.43 0.74 -25.46 16 14 Si 0.90 21.45 29.54 -169.99 -5.02 16.43 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 17 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 18 C 0.08 1.01 11.49 -16.98 -0.20 0.81 16 19 N -0.28 -3.73 12.47 30.87 0.38 -3.34 16 20 N -0.34 -4.08 4.00 -66.14 -0.26 -4.34 16 21 C 0.09 0.65 11.25 59.84 0.67 1.33 16 22 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 23 H 0.11 0.79 8.14 -51.92 -0.42 0.37 16 24 H 0.09 0.97 8.14 -51.92 -0.42 0.54 16 25 H 0.39 6.13 7.41 -40.82 -0.30 5.83 16 26 H 0.06 1.25 8.14 -51.93 -0.42 0.83 16 27 H 0.06 1.28 8.14 -51.93 -0.42 0.85 16 28 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.20 2.00 7.49 -52.49 -0.39 1.60 16 32 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.09 0.48 7.69 -51.93 -0.40 0.08 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 313.42 15.07 4.72 4.72 Total: -1.00 -33.71 313.42 -6.25 -39.97 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -4.44 Total: 0.26 kcal Atomic # 6 Polarization: -1.38 SS G_CDS: 0.11 Total: -1.27 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: 0.52 Total: -46.43 kcal Atomic # 8 Polarization: -11.10 SS G_CDS: 0.08 Total: -11.02 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.43 kcal Atomic # 16 Polarization: -0.43 SS G_CDS: -2.22 Total: -2.66 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -33.71 -6.25 -39.97 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359859225.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.981 kcal (2) G-P(sol) polarization free energy of solvation -33.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.016 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds