Wall clock time and date at job start Mon Mar 30 2020 04:54:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.80997 * 1 3 3 C 1.76207 * 99.99802 * 2 1 4 4 C 1.39400 * 126.46505 * 95.00203 * 3 2 1 5 5 C 1.46726 * 126.52175 * 359.97438 * 4 3 2 6 6 O 1.21699 * 119.99571 * 359.71155 * 5 4 3 7 7 N 1.34777 * 119.99882 * 179.71674 * 5 4 3 8 8 C 1.46496 * 119.99613 * 180.02562 * 7 5 4 9 9 C 1.52998 * 109.46846 * 179.97438 * 8 7 5 10 10 C 1.50706 * 109.47339 * 179.97438 * 9 8 7 11 11 H 1.08005 * 119.99782 * 0.02562 * 10 9 8 12 12 C 1.37871 * 120.00098 * 180.02562 * 10 9 8 13 13 N 1.31516 * 120.00197 * 0.02562 * 12 10 9 14 14 Si 1.86800 * 120.00072 * 180.02562 * 12 10 9 15 15 H 1.48500 * 109.47258 * 59.99826 * 14 12 10 16 16 H 1.48491 * 109.47483 * 179.97438 * 14 12 10 17 17 H 1.48498 * 109.46998 * 300.00223 * 14 12 10 18 18 C 1.41473 * 106.95269 * 179.71256 * 4 3 2 19 19 N 1.30270 * 108.22293 * 0.26366 * 18 4 3 20 20 N 1.34964 * 126.45792 * 275.16482 * 3 2 1 21 21 C 1.46496 * 125.75950 * 359.97438 * 20 3 2 22 22 H 1.09001 * 109.47359 * 59.99953 * 1 2 3 23 23 H 1.09001 * 109.47136 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47192 * 300.00324 * 1 2 3 25 25 H 0.96996 * 119.99871 * 359.97438 * 7 5 4 26 26 H 1.09002 * 109.47226 * 299.99334 * 8 7 5 27 27 H 1.08999 * 109.47406 * 59.99933 * 8 7 5 28 28 H 1.08995 * 109.47938 * 299.99929 * 9 8 7 29 29 H 1.09004 * 109.47171 * 59.99908 * 9 8 7 30 30 H 0.97003 * 119.99593 * 180.02562 * 13 12 10 31 31 H 1.08000 * 125.88671 * 180.23725 * 18 4 3 32 32 H 1.08999 * 109.47062 * 270.31658 * 21 20 3 33 33 H 1.09005 * 109.46896 * 30.31886 * 21 20 3 34 34 H 1.09002 * 109.47238 * 150.31472 * 21 20 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8100 0.0000 0.0000 3 6 2.1159 1.7353 0.0000 4 6 2.3560 2.5343 1.1168 5 6 2.4014 2.0903 2.5146 6 8 2.2133 0.9193 2.7874 7 7 2.6513 2.9794 3.4962 8 6 2.6972 2.5360 4.8917 9 6 2.9966 3.7323 5.7972 10 6 3.0432 3.2764 7.2329 11 1 2.8764 2.2371 7.4752 12 6 3.2988 4.1859 8.2371 13 7 3.5014 5.4514 7.9422 14 14 3.3573 3.6206 10.0166 15 1 4.4240 2.6000 10.1770 16 1 3.6477 4.7817 10.8955 17 1 2.0472 3.0306 10.3918 18 6 2.5536 3.8535 0.6455 19 7 2.4348 3.8447 -0.6517 20 7 2.1589 2.5421 -1.0811 21 6 1.9581 2.1232 -2.4705 22 1 -0.3634 0.5138 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 2.8015 3.9126 3.2786 26 1 1.7356 2.1030 5.1672 27 1 3.4801 1.7868 5.0093 28 1 3.9583 4.1650 5.5218 29 1 2.2140 4.4818 5.6797 30 1 3.6816 6.0912 8.6487 31 1 2.7659 4.7187 1.2560 32 1 2.9155 1.8366 -2.9055 33 1 1.2770 1.2726 -2.4986 34 1 1.5322 2.9486 -3.0409 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000359859225.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:54:17 Heat of formation + Delta-G solvation = 12.437983 kcal Electronic energy + Delta-G solvation = -17719.335914 eV Core-core repulsion = 14779.239541 eV Total energy + Delta-G solvation = -2940.096374 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.37184 -40.10877 -36.49235 -34.87653 -34.43582 -31.98717 -31.16243 -29.83840 -28.25572 -26.60051 -24.11450 -22.81312 -22.31585 -21.27913 -19.32701 -18.47375 -17.59142 -16.94435 -16.68063 -16.40676 -16.17786 -16.10576 -15.49677 -14.87918 -14.71465 -14.54478 -14.37941 -14.24381 -13.71563 -13.52885 -13.49485 -13.17773 -12.88705 -12.54120 -12.39933 -12.17795 -11.85357 -11.60518 -11.43117 -10.84375 -10.57134 -10.56610 -10.06526 -9.69352 -8.75738 -8.20825 -6.31003 -0.15262 0.27775 1.01941 1.31991 1.43984 1.46351 1.54099 1.56478 2.33327 2.42386 2.51353 3.13943 3.37258 3.88112 3.90643 4.17522 4.23741 4.30279 4.32862 4.44454 4.56247 4.59143 4.63850 4.81120 4.91318 5.19793 5.35051 5.49677 5.55051 5.63378 5.83071 6.20085 6.27238 6.71468 6.82311 7.35501 7.38083 8.90823 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.035451 B = 0.003688 C = 0.003402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 789.623326 B = 7591.101905 C = 8227.805765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 S -0.061 6.061 3 C 0.096 3.904 4 C -0.266 4.266 5 C 0.578 3.422 6 O -0.565 6.565 7 N -0.713 5.713 8 C 0.145 3.855 9 C 0.022 3.978 10 C -0.547 4.547 11 H 0.060 0.940 12 C 0.007 3.993 13 N -0.927 5.927 14 Si 0.964 3.036 15 H -0.269 1.269 16 H -0.281 1.281 17 H -0.268 1.268 18 C 0.081 3.919 19 N -0.294 5.294 20 N -0.332 5.332 21 C 0.080 3.920 22 H 0.100 0.900 23 H 0.132 0.868 24 H 0.069 0.931 25 H 0.407 0.593 26 H 0.048 0.952 27 H 0.047 0.953 28 H 0.008 0.992 29 H 0.009 0.991 30 H 0.265 0.735 31 H 0.218 0.782 32 H 0.099 0.901 33 H 0.112 0.888 34 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.689 -6.677 -22.360 24.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.305 4.305 2 S 0.165 5.835 3 C -0.148 4.148 4 C -0.284 4.284 5 C 0.365 3.635 6 O -0.445 6.445 7 N -0.364 5.364 8 C 0.022 3.978 9 C -0.015 4.015 10 C -0.585 4.585 11 H 0.078 0.922 12 C -0.191 4.191 13 N -0.566 5.566 14 Si 0.789 3.211 15 H -0.194 1.194 16 H -0.207 1.207 17 H -0.193 1.193 18 C -0.106 4.106 19 N -0.116 5.116 20 N -0.113 5.113 21 C -0.059 4.059 22 H 0.118 0.882 23 H 0.151 0.849 24 H 0.088 0.912 25 H 0.243 0.757 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.027 0.973 29 H 0.028 0.972 30 H 0.074 0.926 31 H 0.235 0.765 32 H 0.117 0.883 33 H 0.131 0.869 34 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -5.060 -7.562 -23.323 25.035 hybrid contribution -0.517 1.143 1.765 2.166 sum -5.576 -6.419 -21.558 23.174 Atomic orbital electron populations 1.23705 0.92202 1.08670 1.05920 1.85848 1.09170 0.92334 1.96109 1.23664 1.03921 0.98110 0.89063 1.20546 1.19830 0.94688 0.93359 1.17359 0.76512 0.85281 0.84342 1.90802 1.51460 1.17946 1.84264 1.45902 1.71821 1.12120 1.06592 1.21203 0.99841 0.97787 0.78973 1.19137 0.96116 0.92835 0.93415 1.21455 1.49168 0.95265 0.92607 0.92225 1.25859 0.94517 0.94899 1.03871 1.70056 1.48999 1.03022 1.34556 0.85513 0.79054 0.77831 0.78740 1.19380 1.20674 1.19298 1.24498 0.96827 0.97285 0.91949 1.77006 1.22580 0.98393 1.13606 1.49355 1.49755 1.04423 1.07799 1.22487 1.05273 1.03475 0.74699 0.88160 0.84942 0.91221 0.75750 0.93339 0.93502 0.97327 0.97240 0.92593 0.76539 0.88310 0.86918 0.86916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.24 10.50 113.37 1.19 -1.05 16 2 S -0.06 -1.44 20.68 -56.49 -1.17 -2.61 16 3 C 0.10 2.53 6.70 84.49 0.57 3.10 16 4 C -0.27 -8.06 6.15 -19.98 -0.12 -8.18 16 5 C 0.58 21.17 7.79 86.46 0.67 21.84 16 6 O -0.56 -23.93 15.51 -4.35 -0.07 -23.99 16 7 N -0.71 -26.04 5.55 -467.03 -2.59 -28.63 16 8 C 0.15 6.37 5.61 86.38 0.48 6.86 16 9 C 0.02 1.14 5.09 29.85 0.15 1.29 16 10 C -0.55 -30.71 9.11 25.60 0.23 -30.48 16 11 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 12 C 0.01 0.41 5.46 84.65 0.46 0.87 16 13 N -0.93 -54.59 13.29 21.45 0.28 -54.31 16 14 Si 0.96 43.80 29.54 68.60 2.03 45.83 16 15 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 16 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 17 H -0.27 -11.77 7.11 99.48 0.71 -11.07 16 18 C 0.08 2.05 11.49 85.72 0.99 3.04 16 19 N -0.29 -7.31 12.47 -56.24 -0.70 -8.02 16 20 N -0.33 -7.25 4.00 -363.17 -1.45 -8.71 16 21 C 0.08 0.89 11.25 127.77 1.44 2.32 16 22 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 23 H 0.13 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.07 1.45 8.14 -2.40 -0.02 1.43 16 25 H 0.41 12.71 7.41 -92.71 -0.69 12.03 16 26 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 28 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.27 14.73 8.31 -92.71 -0.77 13.96 16 31 H 0.22 4.19 7.49 -2.91 -0.02 4.17 16 32 H 0.10 0.87 8.14 -2.39 -0.02 0.85 16 33 H 0.11 0.81 7.69 -2.38 -0.02 0.79 16 34 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -72.38 313.42 2.82 -69.57 By element: Atomic # 1 Polarization: 10.83 SS G_CDS: 0.43 Total: 11.26 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 6.06 Total: -0.39 kcal Atomic # 7 Polarization: -95.20 SS G_CDS: -4.46 Total: -99.66 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.07 Total: -23.99 kcal Atomic # 14 Polarization: 43.80 SS G_CDS: 2.03 Total: 45.83 kcal Atomic # 16 Polarization: -1.44 SS G_CDS: -1.17 Total: -2.61 kcal Total: -72.38 2.82 -69.57 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000359859225.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.005 kcal (2) G-P(sol) polarization free energy of solvation -72.385 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.817 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds