Wall clock time and date at job start Mon Mar 30 2020 05:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99956 * 2 1 4 4 H 1.48499 * 109.47114 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47380 * 299.99676 * 3 2 1 6 6 H 1.48496 * 109.47589 * 59.99862 * 3 2 1 7 7 C 1.37874 * 119.99895 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00101 * 175.07448 * 7 2 1 9 9 C 1.50702 * 119.99919 * 355.35035 * 7 2 1 10 10 C 1.52999 * 115.55000 * 278.61932 * 9 7 2 11 11 N 1.46901 * 109.47034 * 294.78166 * 10 9 7 12 12 C 1.46898 * 110.99874 * 185.27452 * 11 10 9 13 13 C 1.52998 * 109.47378 * 179.97438 * 12 11 10 14 14 N 1.46495 * 109.47444 * 179.97438 * 13 12 11 15 15 C 1.35051 * 126.03712 * 125.00491 * 14 13 12 16 16 C 1.35369 * 107.72666 * 179.97438 * 15 14 13 17 17 Cl 1.73601 * 126.04403 * 179.97438 * 16 15 14 18 18 C 1.39923 * 107.90943 * 359.97438 * 16 15 14 19 19 N 1.30855 * 108.21416 * 359.76127 * 18 16 15 20 20 C 1.53008 * 117.49715 * 132.91155 * 9 7 2 21 21 C 1.53002 * 59.99947 * 252.51079 * 20 9 7 22 22 H 0.97000 * 119.99629 * 5.00705 * 1 2 3 23 23 H 1.08995 * 109.47342 * 54.77919 * 10 9 7 24 24 H 1.09000 * 109.46910 * 174.78304 * 10 9 7 25 25 H 1.00901 * 110.99905 * 61.32216 * 11 10 9 26 26 H 1.08994 * 109.47290 * 300.00023 * 12 11 10 27 27 H 1.09005 * 109.47329 * 59.99790 * 12 11 10 28 28 H 1.09004 * 109.46953 * 300.00378 * 13 12 11 29 29 H 1.09005 * 109.46908 * 59.99722 * 13 12 11 30 30 H 1.07994 * 126.13150 * 359.93467 * 15 14 13 31 31 H 1.08010 * 125.89394 * 179.97438 * 18 16 15 32 32 H 1.08996 * 117.50138 * 0.02562 * 20 9 7 33 33 H 1.09001 * 117.49393 * 145.01925 * 20 9 7 34 34 H 1.09005 * 117.49970 * 252.51089 * 21 20 9 35 35 H 1.08998 * 117.51887 * 107.48426 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0815 -1.1958 -0.0798 9 6 1.2547 -2.4969 0.1069 10 6 0.8433 -2.9079 1.5221 11 7 2.0454 -3.1726 2.3240 12 6 1.6889 -3.6904 3.6517 13 6 2.9638 -3.9541 4.4555 14 7 2.6083 -4.4698 5.7798 15 6 3.0506 -5.6217 6.3288 16 6 2.4919 -5.7342 7.5566 17 17 2.7376 -7.0391 8.6750 18 6 1.6813 -4.6129 7.7649 19 7 1.7548 -3.8521 6.7028 20 6 1.6324 -3.6113 -0.8712 21 6 0.3084 -2.8629 -1.0383 22 1 -0.4849 0.8369 -0.0733 23 1 0.2699 -2.1031 1.9819 24 1 0.2319 -3.8091 1.4754 25 1 2.6185 -2.3457 2.4003 26 1 1.0744 -2.9576 4.1745 27 1 1.1306 -4.6201 3.5413 28 1 3.5779 -4.6872 3.9324 29 1 3.5224 -3.0246 4.5659 30 1 3.7279 -6.3268 5.8702 31 1 1.0984 -4.4087 8.6510 32 1 2.4234 -3.4022 -1.5913 33 1 1.5879 -4.6375 -0.5064 34 1 -0.6072 -3.3968 -0.7835 35 1 0.2278 -2.1612 -1.8684 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380644489.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:09 Heat of formation + Delta-G solvation = 94.581818 kcal Electronic energy + Delta-G solvation = -17604.172541 eV Core-core repulsion = 14665.594484 eV Total energy + Delta-G solvation = -2938.578056 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.099 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.37877 -37.17556 -36.57799 -35.29594 -32.71652 -31.94205 -30.24985 -28.23220 -25.66593 -24.37439 -22.38524 -21.33345 -20.98417 -20.77831 -19.08905 -17.50026 -15.99304 -15.70145 -15.42878 -14.67522 -14.61507 -14.49940 -13.96326 -13.67334 -13.42575 -13.14366 -12.58481 -12.33003 -12.00249 -11.56975 -11.45122 -11.31088 -11.16323 -10.99691 -10.87980 -10.57310 -10.45944 -10.14032 -9.70367 -9.38649 -8.87717 -8.57229 -8.45801 -8.13421 -7.68065 -6.05719 -4.13380 1.60318 1.81922 2.44026 2.66160 3.24147 3.33690 3.36493 4.30216 4.36589 4.58016 4.86899 4.89875 5.06519 5.22898 5.31449 5.36460 5.42713 5.56501 5.86375 6.01533 6.13038 6.22570 6.41987 6.52173 6.68747 6.76418 6.80114 6.86837 7.16072 7.40576 7.43643 7.53172 7.80384 7.85349 8.08616 8.45368 8.90536 9.52902 11.01668 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.029293 B = 0.003408 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.637205 B = 8214.613611 C = 8731.419196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.879 5.879 2 C 0.069 3.931 3 Si 0.887 3.113 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.494 4.494 8 H 0.061 0.939 9 C 0.048 3.952 10 C 0.108 3.892 11 N -0.678 5.678 12 C 0.048 3.952 13 C 0.134 3.866 14 N -0.354 5.354 15 C 0.076 3.924 16 C -0.194 4.194 17 Cl -0.050 7.050 18 C 0.058 3.942 19 N -0.276 5.276 20 C -0.200 4.200 21 C -0.159 4.159 22 H 0.259 0.741 23 H 0.036 0.964 24 H 0.039 0.961 25 H 0.349 0.651 26 H 0.039 0.961 27 H 0.068 0.932 28 H 0.109 0.891 29 H 0.090 0.910 30 H 0.183 0.817 31 H 0.189 0.811 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.059 0.941 35 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.012 -10.837 13.057 17.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.516 5.516 2 C -0.134 4.134 3 Si 0.715 3.285 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.532 4.532 8 H 0.079 0.921 9 C 0.047 3.953 10 C -0.020 4.020 11 N -0.310 5.310 12 C -0.083 4.083 13 C 0.013 3.987 14 N -0.136 5.136 15 C -0.073 4.073 16 C -0.233 4.233 17 Cl -0.022 7.022 18 C -0.129 4.129 19 N -0.098 5.098 20 C -0.237 4.237 21 C -0.198 4.198 22 H 0.069 0.931 23 H 0.054 0.946 24 H 0.058 0.942 25 H 0.168 0.832 26 H 0.058 0.942 27 H 0.087 0.913 28 H 0.127 0.873 29 H 0.108 0.892 30 H 0.200 0.800 31 H 0.206 0.794 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.077 0.923 35 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 4.613 -10.280 12.229 16.629 hybrid contribution 0.271 0.834 0.839 1.214 sum 4.884 -9.445 13.069 16.848 Atomic orbital electron populations 1.70010 1.05862 1.26542 1.49138 1.25021 0.94801 0.98893 0.94698 0.86620 0.80300 0.83996 0.77612 1.19635 1.21076 1.21059 1.20507 0.92832 0.88724 1.51134 0.92102 1.18729 0.97882 0.92607 0.86056 1.21435 0.89138 0.96938 0.94514 1.60433 1.21318 1.38422 1.10873 1.22087 0.94600 1.00845 0.90748 1.21905 0.98772 1.01452 0.76534 1.48643 1.34880 1.15748 1.14304 1.22295 1.00255 0.91033 0.93747 1.20747 1.11058 0.96600 0.94893 1.98315 1.96429 1.46919 1.60515 1.23876 0.99138 0.91674 0.98190 1.77558 1.11977 1.20857 0.99371 1.22847 0.99070 0.95968 1.05846 1.22526 0.91315 1.02157 1.03754 0.93107 0.94599 0.94222 0.83198 0.94236 0.91321 0.87326 0.89221 0.79998 0.79409 0.90875 0.91749 0.92286 0.90095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.35 12.82 55.43 0.71 -23.64 16 2 C 0.07 1.83 5.44 -17.82 -0.10 1.73 16 3 Si 0.89 20.50 29.54 -169.99 -5.02 15.48 16 4 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 5 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 6 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.49 -12.84 8.31 -34.44 -0.29 -13.13 16 8 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16 9 C 0.05 1.14 1.58 -155.65 -0.25 0.89 16 10 C 0.11 2.34 5.54 -3.82 -0.02 2.32 16 11 N -0.68 -12.23 6.47 -113.78 -0.74 -12.97 16 12 C 0.05 0.72 5.87 -3.83 -0.02 0.70 16 13 C 0.13 1.60 6.77 -4.05 -0.03 1.57 16 14 N -0.35 -4.40 3.68 -61.33 -0.23 -4.62 16 15 C 0.08 0.79 11.43 -17.16 -0.20 0.60 16 16 C -0.19 -2.11 6.65 -39.97 -0.27 -2.38 16 17 Cl -0.05 -0.48 29.30 -51.86 -1.52 -2.00 16 18 C 0.06 0.67 12.02 -17.34 -0.21 0.46 16 19 N -0.28 -3.87 12.42 30.64 0.38 -3.48 16 20 C -0.20 -4.34 9.96 -26.73 -0.27 -4.61 16 21 C -0.16 -3.73 9.36 -26.73 -0.25 -3.98 16 22 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 23 H 0.04 0.87 8.14 -51.93 -0.42 0.44 16 24 H 0.04 0.82 8.08 -51.93 -0.42 0.40 16 25 H 0.35 6.50 8.30 -39.29 -0.33 6.18 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 28 H 0.11 1.07 8.07 -51.93 -0.42 0.65 16 29 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.18 1.32 8.06 -52.49 -0.42 0.90 16 31 H 0.19 1.64 8.06 -52.48 -0.42 1.21 16 32 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 34 H 0.06 1.31 8.14 -51.93 -0.42 0.88 16 35 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 LS Contribution 320.33 15.07 4.83 4.83 Total: -1.00 -28.49 320.33 -8.41 -36.90 By element: Atomic # 1 Polarization: 10.29 SS G_CDS: -4.94 Total: 5.35 kcal Atomic # 6 Polarization: -13.94 SS G_CDS: -1.89 Total: -15.83 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 0.13 Total: -44.72 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.02 Total: 15.48 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -1.52 Total: -2.00 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -28.49 -8.41 -36.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380644489.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 131.478 kcal (2) G-P(sol) polarization free energy of solvation -28.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.410 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.897 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.582 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds