Wall clock time and date at job start Mon Mar 30 2020 05:07:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31520 * 1 3 3 Si 1.86795 * 119.99956 * 2 1 4 4 H 1.48499 * 109.47114 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47380 * 299.99676 * 3 2 1 6 6 H 1.48496 * 109.47589 * 59.99862 * 3 2 1 7 7 C 1.37874 * 119.99895 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00101 * 175.07448 * 7 2 1 9 9 C 1.50702 * 119.99919 * 355.35035 * 7 2 1 10 10 C 1.52999 * 115.55000 * 278.61932 * 9 7 2 11 11 N 1.46901 * 109.47034 * 294.78166 * 10 9 7 12 12 C 1.46898 * 110.99874 * 185.27452 * 11 10 9 13 13 C 1.52998 * 109.47378 * 179.97438 * 12 11 10 14 14 N 1.46495 * 109.47444 * 179.97438 * 13 12 11 15 15 C 1.35051 * 126.03712 * 125.00491 * 14 13 12 16 16 C 1.35369 * 107.72666 * 179.97438 * 15 14 13 17 17 Cl 1.73601 * 126.04403 * 179.97438 * 16 15 14 18 18 C 1.39923 * 107.90943 * 359.97438 * 16 15 14 19 19 N 1.30855 * 108.21416 * 359.76127 * 18 16 15 20 20 C 1.53008 * 117.49715 * 132.91155 * 9 7 2 21 21 C 1.53002 * 59.99947 * 252.51079 * 20 9 7 22 22 H 0.97000 * 119.99629 * 5.00705 * 1 2 3 23 23 H 1.08995 * 109.47342 * 54.77919 * 10 9 7 24 24 H 1.09000 * 109.46910 * 174.78304 * 10 9 7 25 25 H 1.00901 * 110.99905 * 61.32216 * 11 10 9 26 26 H 1.08994 * 109.47290 * 300.00023 * 12 11 10 27 27 H 1.09005 * 109.47329 * 59.99790 * 12 11 10 28 28 H 1.09004 * 109.46953 * 300.00378 * 13 12 11 29 29 H 1.09005 * 109.46908 * 59.99722 * 13 12 11 30 30 H 1.07994 * 126.13150 * 359.93467 * 15 14 13 31 31 H 1.08010 * 125.89394 * 179.97438 * 18 16 15 32 32 H 1.08996 * 117.50138 * 0.02562 * 20 9 7 33 33 H 1.09001 * 117.49393 * 145.01925 * 20 9 7 34 34 H 1.09005 * 117.49970 * 252.51089 * 21 20 9 35 35 H 1.08998 * 117.51887 * 107.48426 * 21 20 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8905 2.3965 1.2124 7 6 2.0045 -1.1940 0.0005 8 1 3.0815 -1.1958 -0.0798 9 6 1.2547 -2.4969 0.1069 10 6 0.8433 -2.9079 1.5221 11 7 2.0454 -3.1726 2.3240 12 6 1.6889 -3.6904 3.6517 13 6 2.9638 -3.9541 4.4555 14 7 2.6083 -4.4698 5.7798 15 6 3.0506 -5.6217 6.3288 16 6 2.4919 -5.7342 7.5566 17 17 2.7376 -7.0391 8.6750 18 6 1.6813 -4.6129 7.7649 19 7 1.7548 -3.8521 6.7028 20 6 1.6324 -3.6113 -0.8712 21 6 0.3084 -2.8629 -1.0383 22 1 -0.4849 0.8369 -0.0733 23 1 0.2699 -2.1031 1.9819 24 1 0.2319 -3.8091 1.4754 25 1 2.6185 -2.3457 2.4003 26 1 1.0744 -2.9576 4.1745 27 1 1.1306 -4.6201 3.5413 28 1 3.5779 -4.6872 3.9324 29 1 3.5224 -3.0246 4.5659 30 1 3.7279 -6.3268 5.8702 31 1 1.0984 -4.4087 8.6510 32 1 2.4234 -3.4022 -1.5913 33 1 1.5879 -4.6375 -0.5064 34 1 -0.6072 -3.3968 -0.7835 35 1 0.2278 -2.1612 -1.8684 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380644489.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:07:09 Heat of formation + Delta-G solvation = 77.612178 kcal Electronic energy + Delta-G solvation = -17604.908399 eV Core-core repulsion = 14665.594484 eV Total energy + Delta-G solvation = -2939.313915 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.099 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -42.24718 -38.86572 -37.39500 -36.65422 -34.03063 -33.78917 -31.15836 -29.41691 -27.58427 -25.84327 -23.64900 -22.76489 -22.17131 -21.80366 -20.92114 -18.43980 -17.85223 -16.87988 -16.63508 -16.52475 -15.80222 -15.57154 -15.44746 -14.97843 -14.48256 -14.30697 -14.21101 -13.62186 -13.31784 -12.99427 -12.94227 -12.87169 -12.59512 -12.38980 -12.28902 -12.22920 -11.96183 -11.43924 -11.24347 -10.81938 -10.60429 -10.39083 -9.95455 -9.41651 -9.26528 -8.08085 -6.20366 0.75622 0.98857 1.39991 1.44405 1.53850 1.59588 1.81299 2.43164 3.16502 3.20291 3.60726 3.85478 3.85846 3.90401 4.03972 4.32038 4.36323 4.44061 4.60416 4.64004 4.69596 4.79376 4.83398 4.97830 5.02318 5.08994 5.31091 5.37432 5.63040 5.69727 5.81830 5.86089 6.18043 6.47187 6.53118 6.54880 6.89718 7.48527 8.98962 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.029293 B = 0.003408 C = 0.003206 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.637205 B = 8214.613611 C = 8731.419196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.910 5.910 2 C 0.023 3.977 3 Si 0.947 3.053 4 H -0.262 1.262 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.500 4.500 8 H 0.057 0.943 9 C 0.025 3.975 10 C 0.122 3.878 11 N -0.668 5.668 12 C 0.056 3.944 13 C 0.143 3.857 14 N -0.364 5.364 15 C 0.084 3.916 16 C -0.205 4.205 17 Cl -0.039 7.039 18 C 0.058 3.942 19 N -0.323 5.323 20 C -0.173 4.173 21 C -0.170 4.170 22 H 0.257 0.743 23 H 0.000 1.000 24 H 0.047 0.953 25 H 0.346 0.654 26 H 0.016 0.984 27 H 0.068 0.932 28 H 0.137 0.863 29 H 0.091 0.909 30 H 0.216 0.784 31 H 0.208 0.792 32 H 0.074 0.926 33 H 0.088 0.912 34 H 0.067 0.933 35 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.571 -12.148 13.716 19.465 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.177 4.177 3 Si 0.773 3.227 4 H -0.186 1.186 5 H -0.212 1.212 6 H -0.212 1.212 7 C -0.538 4.538 8 H 0.076 0.924 9 C 0.024 3.976 10 C -0.007 4.007 11 N -0.300 5.300 12 C -0.074 4.074 13 C 0.022 3.978 14 N -0.146 5.146 15 C -0.064 4.064 16 C -0.244 4.244 17 Cl -0.011 7.011 18 C -0.128 4.128 19 N -0.144 5.144 20 C -0.211 4.211 21 C -0.208 4.208 22 H 0.066 0.934 23 H 0.018 0.982 24 H 0.066 0.934 25 H 0.164 0.836 26 H 0.034 0.966 27 H 0.087 0.913 28 H 0.155 0.845 29 H 0.109 0.891 30 H 0.233 0.767 31 H 0.225 0.775 32 H 0.092 0.908 33 H 0.106 0.894 34 H 0.086 0.914 35 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.191 -11.606 12.898 18.423 hybrid contribution -0.219 1.161 0.679 1.363 sum 5.972 -10.445 13.577 18.141 Atomic orbital electron populations 1.70124 1.07164 1.27024 1.50511 1.25685 0.95456 1.01881 0.94695 0.85678 0.79555 0.80284 0.77170 1.18638 1.21244 1.21210 1.20761 0.92815 0.89932 1.50292 0.92445 1.18875 0.98425 0.92945 0.87327 1.21146 0.90034 0.95860 0.93689 1.60384 1.19499 1.37829 1.12249 1.22018 0.96260 0.99765 0.89374 1.21808 0.96938 1.02676 0.76338 1.48633 1.35319 1.16434 1.14235 1.22860 0.99697 0.90416 0.93474 1.20880 1.11165 0.96848 0.95468 1.98319 1.96375 1.46256 1.60164 1.24298 0.98810 0.91515 0.98176 1.77519 1.13751 1.22550 1.00622 1.22828 0.97530 0.96417 1.04286 1.22443 0.92642 1.02586 1.03113 0.93382 0.98198 0.93413 0.83590 0.96583 0.91313 0.84474 0.89063 0.76709 0.77496 0.90791 0.89405 0.91418 0.92534 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -51.37 12.82 21.45 0.28 -51.10 16 2 C 0.02 1.21 5.44 84.65 0.46 1.67 16 3 Si 0.95 42.29 29.54 68.60 2.03 44.32 16 4 H -0.26 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.29 -12.78 7.11 99.48 0.71 -12.08 16 6 H -0.29 -12.75 7.11 99.48 0.71 -12.05 16 7 C -0.50 -25.94 8.31 25.60 0.21 -25.73 16 8 H 0.06 2.96 7.82 -2.91 -0.02 2.94 16 9 C 0.02 1.18 1.58 -52.92 -0.08 1.09 16 10 C 0.12 5.26 5.54 86.30 0.48 5.74 16 11 N -0.67 -23.49 6.47 -513.90 -3.33 -26.81 16 12 C 0.06 1.65 5.87 86.30 0.51 2.16 16 13 C 0.14 3.12 6.77 86.38 0.58 3.71 16 14 N -0.36 -8.42 3.68 -347.94 -1.28 -9.70 16 15 C 0.08 1.53 11.43 83.53 0.95 2.49 16 16 C -0.20 -4.05 6.65 22.02 0.15 -3.91 16 17 Cl -0.04 -0.67 29.30 -2.72 -0.08 -0.75 16 18 C 0.06 1.28 12.02 85.25 1.02 2.31 16 19 N -0.32 -8.81 12.42 -56.97 -0.71 -9.52 16 20 C -0.17 -7.24 9.96 30.60 0.30 -6.94 16 21 C -0.17 -7.92 9.36 30.60 0.29 -7.64 16 22 H 0.26 13.99 8.32 -92.71 -0.77 13.22 16 23 H 0.00 -0.01 8.14 -2.39 -0.02 -0.03 16 24 H 0.05 1.95 8.08 -2.39 -0.02 1.93 16 25 H 0.35 12.66 8.30 -89.69 -0.74 11.92 16 26 H 0.02 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.07 2.02 8.14 -2.38 -0.02 2.00 16 28 H 0.14 2.22 8.07 -2.38 -0.02 2.20 16 29 H 0.09 1.97 8.14 -2.38 -0.02 1.96 16 30 H 0.22 2.27 8.06 -2.91 -0.02 2.25 16 31 H 0.21 3.36 8.06 -2.91 -0.02 3.34 16 32 H 0.07 3.07 8.14 -2.39 -0.02 3.05 16 33 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 34 H 0.07 2.99 8.14 -2.38 -0.02 2.97 16 35 H 0.06 2.88 8.14 -2.39 -0.02 2.86 16 Total: -1.00 -60.99 320.33 2.13 -58.87 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: 0.34 Total: 19.73 kcal Atomic # 6 Polarization: -29.92 SS G_CDS: 4.88 Total: -25.04 kcal Atomic # 7 Polarization: -92.09 SS G_CDS: -5.04 Total: -97.12 kcal Atomic # 14 Polarization: 42.29 SS G_CDS: 2.03 Total: 44.32 kcal Atomic # 17 Polarization: -0.67 SS G_CDS: -0.08 Total: -0.75 kcal Total: -60.99 2.13 -58.87 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380644489.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.480 kcal (2) G-P(sol) polarization free energy of solvation -60.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.867 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds