Wall clock time and date at job start Mon Mar 30 2020 04:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47078 * 2 1 4 4 C 1.50700 * 109.47079 * 240.00337 * 2 1 3 5 5 H 1.08001 * 119.99956 * 239.99833 * 4 2 1 6 6 C 1.37879 * 120.00186 * 59.99811 * 4 2 1 7 7 N 1.31509 * 119.99735 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99761 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47176 * 60.00192 * 8 6 4 10 10 H 1.48507 * 109.46854 * 180.02562 * 8 6 4 11 11 H 1.48510 * 109.47107 * 300.00046 * 8 6 4 12 12 N 1.46903 * 109.46790 * 120.00172 * 2 1 3 13 13 C 1.46896 * 111.00106 * 274.99630 * 12 2 1 14 14 C 1.52996 * 109.47256 * 180.02562 * 13 12 2 15 15 N 1.46498 * 109.47059 * 180.02562 * 14 13 12 16 16 C 1.34777 * 119.99828 * 179.72339 * 15 14 13 17 17 O 1.21693 * 120.00014 * 0.28042 * 16 15 14 18 18 C 1.46682 * 120.00182 * 180.27909 * 16 15 14 19 19 C 1.35660 * 126.13242 * 179.72193 * 18 16 15 20 20 N 1.30942 * 114.19058 * 179.78673 * 19 18 16 21 21 C 1.29424 * 117.36634 * 0.51607 * 20 19 18 22 22 S 1.70958 * 110.38906 * 359.71406 * 21 20 19 23 23 H 1.08999 * 109.47149 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47528 * 300.00162 * 1 2 3 25 25 H 1.09000 * 109.46911 * 59.99799 * 1 2 3 26 26 H 0.97003 * 119.99530 * 180.02562 * 7 6 4 27 27 H 1.00900 * 110.99242 * 151.04607 * 12 2 1 28 28 H 1.09004 * 109.46774 * 60.00282 * 13 12 2 29 29 H 1.09000 * 109.47249 * 300.00908 * 13 12 2 30 30 H 1.09004 * 109.47066 * 60.00378 * 14 13 12 31 31 H 1.08994 * 109.46974 * 300.00526 * 14 13 12 32 32 H 0.97001 * 120.00384 * 0.02562 * 15 14 13 33 33 H 1.08000 * 122.90702 * 359.95300 * 19 18 16 34 34 H 1.07997 * 124.80924 * 179.68675 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.8258 -2.5201 -4.0078 10 1 1.8269 -0.4197 -5.2205 11 1 3.8064 -1.1208 -4.0082 12 7 2.0196 -0.6926 1.1995 13 6 2.0824 0.2225 2.3469 14 6 2.5961 -0.5330 3.5742 15 7 2.6582 0.3794 4.7186 16 6 3.0796 -0.0706 5.9171 17 8 3.4134 -1.2336 6.0473 18 6 3.1360 0.8414 7.0645 19 6 3.5330 0.5217 8.3217 20 7 3.4959 1.5214 9.1667 21 6 3.0858 2.6642 8.7185 22 16 2.6931 2.5470 7.0588 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 0.7089 1.1614 -3.4844 27 1 2.9172 -1.1205 1.0287 28 1 1.0870 0.6162 2.5525 29 1 2.7588 1.0461 2.1182 30 1 3.5916 -0.9264 3.3683 31 1 1.9201 -1.3568 3.8029 32 1 2.3919 1.3064 4.6150 33 1 3.8547 -0.4707 8.6009 34 1 3.0030 3.5644 9.3094 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381172951.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:57 Heat of formation + Delta-G solvation = 8.801284 kcal Electronic energy + Delta-G solvation = -17299.975004 eV Core-core repulsion = 14359.720931 eV Total energy + Delta-G solvation = -2940.254073 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.38769 -39.22836 -36.49180 -34.70827 -32.60268 -31.17850 -29.55012 -27.08713 -25.93457 -25.15363 -22.55025 -21.57425 -20.30565 -19.86958 -19.08704 -17.14524 -16.41942 -16.21406 -15.82232 -15.15945 -14.93272 -14.62317 -14.36107 -14.13986 -13.91992 -13.46917 -13.17968 -12.55633 -11.99855 -11.85001 -11.52488 -11.09260 -10.83786 -10.81063 -10.50041 -10.34783 -10.19639 -10.13921 -9.94943 -9.94054 -9.48134 -9.15303 -8.90946 -8.52944 -7.42539 -6.08308 -4.15090 -0.11534 0.79975 1.18486 2.15186 2.92084 2.96855 3.28534 3.32961 3.36102 3.88735 4.36142 4.56712 4.75303 4.94148 5.09320 5.23365 5.31627 5.55580 5.68730 5.80132 6.11900 6.22046 6.35356 6.79576 7.05810 7.13952 7.14533 7.28205 7.40489 7.71832 7.80986 7.94127 8.19332 8.27116 8.56020 8.94026 9.51199 10.98082 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.044626 B = 0.002986 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.286124 B = 9375.954911 C = 9720.214475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.213 3.787 3 H 0.002 0.998 4 C -0.522 4.522 5 H 0.061 0.939 6 C 0.063 3.937 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.685 5.685 13 C 0.050 3.950 14 C 0.120 3.880 15 N -0.718 5.718 16 C 0.593 3.407 17 O -0.524 6.524 18 C -0.285 4.285 19 C 0.113 3.887 20 N -0.476 5.476 21 C 0.030 3.970 22 S 0.170 5.830 23 H 0.033 0.967 24 H 0.004 0.996 25 H 0.081 0.919 26 H 0.262 0.738 27 H 0.334 0.666 28 H 0.070 0.930 29 H 0.026 0.974 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.398 0.602 33 H 0.190 0.810 34 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.883 6.449 19.238 20.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.106 3.894 3 H 0.020 0.980 4 C -0.560 4.560 5 H 0.079 0.921 6 C -0.139 4.139 7 N -0.529 5.529 8 Si 0.726 3.274 9 H -0.201 1.201 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.317 5.317 13 C -0.081 4.081 14 C -0.003 4.003 15 N -0.370 5.370 16 C 0.377 3.623 17 O -0.402 6.402 18 C -0.409 4.409 19 C -0.044 4.044 20 N -0.189 5.189 21 C -0.265 4.265 22 S 0.424 5.576 23 H 0.052 0.948 24 H 0.023 0.977 25 H 0.100 0.900 26 H 0.072 0.928 27 H 0.151 0.849 28 H 0.088 0.912 29 H 0.044 0.956 30 H 0.088 0.912 31 H 0.098 0.902 32 H 0.232 0.768 33 H 0.206 0.794 34 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges 2.178 6.212 19.144 20.244 hybrid contribution 1.157 -0.101 -0.845 1.436 sum 3.335 6.111 18.299 19.578 Atomic orbital electron populations 1.21731 0.97761 0.99508 0.99386 1.19117 0.92689 0.92316 0.85277 0.98030 1.21220 1.31732 1.12667 0.90397 0.92129 1.24916 0.94967 0.94971 0.99094 1.69881 1.36491 1.22828 1.23685 0.86556 0.79090 0.79817 0.81922 1.20115 1.21273 1.20288 1.60666 1.32355 1.32750 1.05881 1.22050 1.00188 0.94619 0.91224 1.21497 1.02175 0.92592 0.84022 1.45898 1.66899 1.14447 1.09722 1.16676 0.77811 0.86402 0.81362 1.90864 1.48643 1.16813 1.83867 1.25904 1.16382 0.98078 1.00542 1.22282 0.96091 0.99491 0.86582 1.66272 1.17045 0.99131 1.36481 1.28842 1.00429 1.00514 0.96673 1.84085 1.58398 1.04399 1.10750 0.94820 0.97735 0.90000 0.92799 0.84882 0.91158 0.95616 0.91241 0.90188 0.76824 0.79353 0.77737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.05 9.19 37.16 0.34 -2.71 16 2 C 0.21 5.24 2.60 -68.86 -0.18 5.06 16 3 H 0.00 0.05 7.80 -51.93 -0.40 -0.35 16 4 C -0.52 -14.04 8.59 -34.44 -0.30 -14.33 16 5 H 0.06 1.60 7.62 -52.49 -0.40 1.20 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -24.97 11.32 55.43 0.63 -24.34 16 8 Si 0.90 20.96 29.54 -169.99 -5.02 15.94 16 9 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 10 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 12 N -0.68 -13.98 6.30 -107.95 -0.68 -14.66 16 13 C 0.05 0.82 5.60 -3.83 -0.02 0.79 16 14 C 0.12 1.74 5.93 -4.04 -0.02 1.71 16 15 N -0.72 -8.88 5.55 -61.62 -0.34 -9.22 16 16 C 0.59 7.96 7.79 -12.85 -0.10 7.86 16 17 O -0.52 -8.81 16.87 5.20 0.09 -8.72 16 18 C -0.28 -3.06 6.48 -37.10 -0.24 -3.30 16 19 C 0.11 1.19 11.09 -18.85 -0.21 0.98 16 20 N -0.48 -4.69 10.51 -15.38 -0.16 -4.86 16 21 C 0.03 0.21 12.22 51.75 0.63 0.84 16 22 S 0.17 1.23 22.35 -107.50 -2.40 -1.17 16 23 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 24 H 0.00 0.08 7.45 -51.93 -0.39 -0.31 16 25 H 0.08 2.16 6.07 -51.93 -0.32 1.85 16 26 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 27 H 0.33 6.64 8.22 -39.29 -0.32 6.32 16 28 H 0.07 1.15 7.44 -51.93 -0.39 0.76 16 29 H 0.03 0.42 8.06 -51.93 -0.42 0.00 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.40 4.02 7.66 -40.82 -0.31 3.71 16 33 H 0.19 1.85 8.06 -52.49 -0.42 1.43 16 34 H 0.21 0.64 8.06 -52.49 -0.42 0.21 16 LS Contribution 307.73 15.07 4.64 4.64 Total: -1.00 -31.12 307.73 -7.64 -38.77 By element: Atomic # 1 Polarization: 9.29 SS G_CDS: -4.20 Total: 5.10 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -0.19 Total: -1.48 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: -0.56 Total: -53.07 kcal Atomic # 8 Polarization: -8.81 SS G_CDS: 0.09 Total: -8.72 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Atomic # 16 Polarization: 1.23 SS G_CDS: -2.40 Total: -1.17 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -31.12 -7.64 -38.77 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381172951.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.568 kcal (2) G-P(sol) polarization free energy of solvation -31.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.443 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.801 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds