Wall clock time and date at job start Mon Mar 30 2020 04:48:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47078 * 2 1 4 4 C 1.50700 * 109.47079 * 240.00337 * 2 1 3 5 5 H 1.08001 * 119.99956 * 239.99833 * 4 2 1 6 6 C 1.37879 * 120.00186 * 59.99811 * 4 2 1 7 7 N 1.31509 * 119.99735 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99761 * 180.02562 * 6 4 2 9 9 H 1.48492 * 109.47176 * 60.00192 * 8 6 4 10 10 H 1.48507 * 109.46854 * 180.02562 * 8 6 4 11 11 H 1.48510 * 109.47107 * 300.00046 * 8 6 4 12 12 N 1.46903 * 109.46790 * 120.00172 * 2 1 3 13 13 C 1.46896 * 111.00106 * 274.99630 * 12 2 1 14 14 C 1.52996 * 109.47256 * 180.02562 * 13 12 2 15 15 N 1.46498 * 109.47059 * 180.02562 * 14 13 12 16 16 C 1.34777 * 119.99828 * 179.72339 * 15 14 13 17 17 O 1.21693 * 120.00014 * 0.28042 * 16 15 14 18 18 C 1.46682 * 120.00182 * 180.27909 * 16 15 14 19 19 C 1.35660 * 126.13242 * 179.72193 * 18 16 15 20 20 N 1.30942 * 114.19058 * 179.78673 * 19 18 16 21 21 C 1.29424 * 117.36634 * 0.51607 * 20 19 18 22 22 S 1.70958 * 110.38906 * 359.71406 * 21 20 19 23 23 H 1.08999 * 109.47149 * 179.97438 * 1 2 3 24 24 H 1.08998 * 109.47528 * 300.00162 * 1 2 3 25 25 H 1.09000 * 109.46911 * 59.99799 * 1 2 3 26 26 H 0.97003 * 119.99530 * 180.02562 * 7 6 4 27 27 H 1.00900 * 110.99242 * 151.04607 * 12 2 1 28 28 H 1.09004 * 109.46774 * 60.00282 * 13 12 2 29 29 H 1.09000 * 109.47249 * 300.00908 * 13 12 2 30 30 H 1.09004 * 109.47066 * 60.00378 * 14 13 12 31 31 H 1.08994 * 109.46974 * 300.00526 * 14 13 12 32 32 H 0.97001 * 120.00384 * 0.02562 * 15 14 13 33 33 H 1.08000 * 122.90702 * 359.95300 * 19 18 16 34 34 H 1.07997 * 124.80924 * 179.68675 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6034 8 14 2.3213 -1.1203 -4.0080 9 1 1.8258 -2.5201 -4.0078 10 1 1.8269 -0.4197 -5.2205 11 1 3.8064 -1.1208 -4.0082 12 7 2.0196 -0.6926 1.1995 13 6 2.0824 0.2225 2.3469 14 6 2.5961 -0.5330 3.5742 15 7 2.6582 0.3794 4.7186 16 6 3.0796 -0.0706 5.9171 17 8 3.4134 -1.2336 6.0473 18 6 3.1360 0.8414 7.0645 19 6 3.5330 0.5217 8.3217 20 7 3.4959 1.5214 9.1667 21 6 3.0858 2.6642 8.7185 22 16 2.6931 2.5470 7.0588 23 1 -0.3633 -1.0277 -0.0005 24 1 -0.3634 0.5138 0.8899 25 1 -0.3633 0.5139 -0.8900 26 1 0.7089 1.1614 -3.4844 27 1 2.9172 -1.1205 1.0287 28 1 1.0870 0.6162 2.5525 29 1 2.7588 1.0461 2.1182 30 1 3.5916 -0.9264 3.3683 31 1 1.9201 -1.3568 3.8029 32 1 2.3919 1.3064 4.6150 33 1 3.8547 -0.4707 8.6009 34 1 3.0030 3.5644 9.3094 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381172951.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:48:57 Heat of formation + Delta-G solvation = -15.153487 kcal Electronic energy + Delta-G solvation = -17301.013761 eV Core-core repulsion = 14359.720931 eV Total energy + Delta-G solvation = -2941.292830 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -41.25785 -40.14909 -38.07950 -36.12128 -34.38673 -32.19264 -31.03738 -28.43052 -27.31142 -26.70897 -23.76330 -22.68468 -21.76956 -21.04721 -19.96072 -18.57984 -17.78798 -17.27829 -17.07609 -16.72263 -16.05135 -15.86389 -15.31669 -15.19550 -14.98255 -14.89998 -14.63194 -14.23742 -13.60098 -13.11626 -12.89891 -12.68477 -12.64844 -12.45886 -12.20979 -12.13473 -11.89349 -11.48539 -10.91313 -10.80305 -10.70513 -10.57041 -10.27058 -10.08464 -9.12700 -8.14007 -6.27735 -0.81727 0.14994 0.53962 1.36448 1.43706 1.45277 1.52702 1.88156 2.04532 2.42242 3.15168 3.28932 3.62613 3.70560 3.96859 4.10803 4.19024 4.33425 4.49058 4.79335 4.89270 4.95645 4.97791 5.08321 5.15886 5.22944 5.47321 5.66303 5.85656 6.22199 6.24006 6.42426 6.52769 6.73270 6.92841 6.97027 7.42646 8.91449 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.044626 B = 0.002986 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 627.286124 B = 9375.954911 C = 9720.214475 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.217 3.783 3 H -0.023 1.023 4 C -0.542 4.542 5 H 0.060 0.940 6 C 0.015 3.985 7 N -0.916 5.916 8 Si 0.961 3.039 9 H -0.273 1.273 10 H -0.284 1.284 11 H -0.271 1.271 12 N -0.687 5.687 13 C 0.057 3.943 14 C 0.135 3.865 15 N -0.710 5.710 16 C 0.595 3.405 17 O -0.567 6.567 18 C -0.320 4.320 19 C 0.114 3.886 20 N -0.505 5.505 21 C 0.046 3.954 22 S 0.223 5.777 23 H 0.026 0.974 24 H 0.026 0.974 25 H 0.058 0.942 26 H 0.263 0.737 27 H 0.336 0.664 28 H 0.074 0.926 29 H 0.032 0.968 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.410 0.590 33 H 0.184 0.816 34 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.030 7.621 20.034 21.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.109 3.891 3 H -0.005 1.005 4 C -0.580 4.580 5 H 0.078 0.922 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.786 3.214 9 H -0.198 1.198 10 H -0.209 1.209 11 H -0.196 1.196 12 N -0.319 5.319 13 C -0.073 4.073 14 C 0.011 3.989 15 N -0.362 5.362 16 C 0.381 3.619 17 O -0.448 6.448 18 C -0.444 4.444 19 C -0.045 4.045 20 N -0.218 5.218 21 C -0.248 4.248 22 S 0.477 5.523 23 H 0.045 0.955 24 H 0.045 0.955 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.154 0.846 28 H 0.093 0.907 29 H 0.050 0.950 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.246 0.754 33 H 0.201 0.799 34 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 2.318 7.423 19.949 21.411 hybrid contribution 1.096 -0.352 -0.997 1.523 sum 3.414 7.070 18.951 20.513 Atomic orbital electron populations 1.21569 0.97628 0.98930 0.99290 1.18915 0.92785 0.91000 0.86377 1.00534 1.21583 1.31911 1.12859 0.91682 0.92231 1.25692 0.95135 0.95653 1.01944 1.70000 1.37300 1.23932 1.24296 0.85571 0.78748 0.78647 0.78410 1.19805 1.20908 1.19595 1.60535 1.32638 1.33251 1.05440 1.22007 1.00715 0.94214 0.90386 1.21163 1.01526 0.92334 0.83888 1.45722 1.66702 1.14757 1.08995 1.16983 0.76736 0.86248 0.81924 1.90832 1.50553 1.18791 1.84608 1.25646 1.18959 1.00226 0.99582 1.22334 0.95505 0.99850 0.86771 1.66339 1.18872 0.99884 1.36733 1.29598 0.97389 1.00784 0.96996 1.83891 1.57072 1.00873 1.10417 0.95470 0.95519 0.92367 0.92768 0.84633 0.90747 0.95031 0.91633 0.91216 0.75361 0.79914 0.73741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.60 9.19 71.98 0.66 -4.94 16 2 C 0.22 10.71 2.60 44.17 0.11 10.82 16 3 H -0.02 -1.22 7.80 -2.39 -0.02 -1.24 16 4 C -0.54 -29.20 8.59 25.60 0.22 -28.98 16 5 H 0.06 3.14 7.62 -2.91 -0.02 3.12 16 6 C 0.02 0.83 5.30 84.66 0.45 1.28 16 7 N -0.92 -51.63 11.32 21.45 0.24 -51.39 16 8 Si 0.96 42.78 29.54 68.60 2.03 44.80 16 9 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 10 H -0.28 -12.38 7.11 99.48 0.71 -11.67 16 11 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 12 N -0.69 -27.78 6.30 -495.46 -3.12 -30.90 16 13 C 0.06 1.81 5.60 86.30 0.48 2.29 16 14 C 0.13 3.82 5.93 86.38 0.51 4.33 16 15 N -0.71 -16.90 5.55 -467.09 -2.59 -19.50 16 16 C 0.59 15.82 7.79 86.45 0.67 16.49 16 17 O -0.57 -19.47 16.87 -4.33 -0.07 -19.54 16 18 C -0.32 -6.57 6.48 23.88 0.15 -6.41 16 19 C 0.11 2.35 11.09 84.23 0.93 3.28 16 20 N -0.50 -9.06 10.51 -202.57 -2.13 -11.19 16 21 C 0.05 0.49 12.22 130.60 1.60 2.09 16 22 S 0.22 2.63 22.35 -56.49 -1.26 1.37 16 23 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 24 H 0.03 1.12 7.45 -2.39 -0.02 1.10 16 25 H 0.06 3.10 6.07 -2.39 -0.01 3.08 16 26 H 0.26 14.11 8.31 -92.71 -0.77 13.34 16 27 H 0.34 13.30 8.22 -89.69 -0.74 12.57 16 28 H 0.07 2.32 7.44 -2.38 -0.02 2.30 16 29 H 0.03 0.99 8.06 -2.39 -0.02 0.97 16 30 H 0.07 1.93 8.14 -2.38 -0.02 1.91 16 31 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 32 H 0.41 7.61 7.66 -92.71 -0.71 6.90 16 33 H 0.18 3.73 8.06 -2.91 -0.02 3.71 16 34 H 0.25 0.38 8.06 -2.91 -0.02 0.35 16 Total: -1.00 -67.05 307.73 -1.42 -68.48 By element: Atomic # 1 Polarization: 17.94 SS G_CDS: -0.31 Total: 17.62 kcal Atomic # 6 Polarization: -5.56 SS G_CDS: 5.80 Total: 0.24 kcal Atomic # 7 Polarization: -105.37 SS G_CDS: -7.60 Total: -112.97 kcal Atomic # 8 Polarization: -19.47 SS G_CDS: -0.07 Total: -19.54 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.80 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -1.26 Total: 1.37 kcal Total: -67.05 -1.42 -68.48 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381172951.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.322 kcal (2) G-P(sol) polarization free energy of solvation -67.051 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds