Wall clock time and date at job start Mon Mar 30 2020 04:49:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.46816 * 2 1 4 4 C 1.50699 * 109.47155 * 119.99554 * 2 1 3 5 5 H 1.07996 * 120.00077 * 120.00106 * 4 2 1 6 6 C 1.37882 * 119.99965 * 300.00191 * 4 2 1 7 7 N 1.31509 * 120.00423 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 119.99707 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47120 * 90.00042 * 8 6 4 10 10 H 1.48504 * 109.46986 * 209.99836 * 8 6 4 11 11 H 1.48503 * 109.47282 * 330.00008 * 8 6 4 12 12 N 1.46891 * 109.47150 * 239.99785 * 2 1 3 13 13 C 1.46906 * 111.00342 * 85.00227 * 12 2 1 14 14 C 1.52998 * 109.47406 * 180.02562 * 13 12 2 15 15 N 1.46496 * 109.46846 * 179.97438 * 14 13 12 16 16 C 1.34777 * 119.99613 * 179.97438 * 15 14 13 17 17 O 1.21691 * 120.00306 * 0.02562 * 16 15 14 18 18 C 1.46686 * 119.99903 * 180.02562 * 16 15 14 19 19 C 1.35665 * 126.12849 * 179.71479 * 18 16 15 20 20 N 1.30942 * 114.18884 * 179.78368 * 19 18 16 21 21 C 1.29439 * 117.36603 * 0.53522 * 20 19 18 22 22 S 1.70951 * 110.38604 * 359.70044 * 21 20 19 23 23 H 1.09002 * 109.47544 * 60.00343 * 1 2 3 24 24 H 1.08998 * 109.47117 * 180.02562 * 1 2 3 25 25 H 1.09006 * 109.47411 * 299.99932 * 1 2 3 26 26 H 0.96995 * 120.00485 * 179.97438 * 7 6 4 27 27 H 1.00905 * 111.00050 * 208.95097 * 12 2 1 28 28 H 1.08995 * 109.46933 * 59.99120 * 13 12 2 29 29 H 1.09004 * 109.46612 * 300.00098 * 13 12 2 30 30 H 1.09002 * 109.47106 * 59.99539 * 14 13 12 31 31 H 1.08999 * 109.46731 * 299.99427 * 14 13 12 32 32 H 0.96996 * 120.00516 * 0.02562 * 15 14 13 33 33 H 1.07995 * 122.90459 * 0.02562 * 19 18 16 34 34 H 1.07992 * 124.80920 * 179.68404 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4828 7 7 0.9435 0.8304 2.6035 8 14 2.3225 -1.1193 4.0080 9 1 3.6305 -0.5436 4.4119 10 1 1.3444 -0.9487 5.1124 11 1 2.4881 -2.5651 3.7124 12 7 2.0196 -0.6925 -1.1993 13 6 2.0825 0.2225 -2.3469 14 6 2.5950 -0.5333 -3.5744 15 7 2.6571 0.3791 -4.7189 16 6 3.0834 -0.0697 -5.9161 17 8 3.4163 -1.2328 -6.0465 18 6 3.1461 0.8440 -7.0619 19 6 3.5586 0.5282 -8.3151 20 7 3.5156 1.5264 -9.1616 21 6 3.1061 2.6695 -8.7133 22 16 2.7066 2.5504 -7.0554 23 1 -0.3634 0.5138 -0.8900 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3634 0.5138 0.8900 26 1 0.7088 1.1616 3.4844 27 1 2.9173 -1.1205 -1.0286 28 1 2.7587 1.0461 -2.1182 29 1 1.0870 0.6162 -2.5525 30 1 1.9183 -1.3567 -3.8029 31 1 3.5904 -0.9273 -3.3690 32 1 2.3921 1.3064 -4.6149 33 1 3.8899 -0.4617 -8.5917 34 1 3.0281 3.5708 -9.3030 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381172960.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:00 Heat of formation + Delta-G solvation = -15.207086 kcal Electronic energy + Delta-G solvation = -17301.004711 eV Core-core repulsion = 14359.709558 eV Total energy + Delta-G solvation = -2941.295154 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.094 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.25710 -40.14804 -38.07951 -36.12173 -34.38669 -32.19200 -31.03687 -28.43037 -27.31290 -26.70956 -23.76328 -22.68444 -21.76967 -21.04746 -19.96037 -18.58240 -17.78861 -17.27884 -17.07577 -16.72293 -16.04911 -15.86175 -15.31912 -15.19752 -14.98157 -14.89815 -14.63311 -14.23558 -13.60780 -13.11996 -12.89985 -12.68836 -12.65034 -12.45254 -12.21272 -12.12453 -11.89319 -11.48565 -10.90576 -10.80272 -10.70447 -10.57594 -10.27037 -10.08467 -9.12637 -8.14169 -6.27778 -0.81737 0.14990 0.53979 1.36444 1.42545 1.44395 1.54562 1.88198 2.04532 2.42141 3.15069 3.28937 3.62629 3.70599 3.96799 4.10856 4.19087 4.33448 4.49095 4.79316 4.89282 4.95731 4.97811 5.08368 5.15936 5.23006 5.47342 5.66513 5.85629 6.22196 6.24042 6.42479 6.52761 6.73390 6.92894 6.97106 7.42646 8.91487 Molecular weight = 269.09amu Principal moments of inertia in cm(-1) A = 0.044554 B = 0.002986 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 628.296540 B = 9375.250991 C = 9718.024663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.217 3.783 3 H -0.023 1.023 4 C -0.541 4.541 5 H 0.059 0.941 6 C 0.015 3.985 7 N -0.916 5.916 8 Si 0.961 3.039 9 H -0.275 1.275 10 H -0.283 1.283 11 H -0.270 1.270 12 N -0.687 5.687 13 C 0.057 3.943 14 C 0.135 3.865 15 N -0.710 5.710 16 C 0.595 3.405 17 O -0.567 6.567 18 C -0.320 4.320 19 C 0.114 3.886 20 N -0.505 5.505 21 C 0.046 3.954 22 S 0.223 5.777 23 H 0.026 0.974 24 H 0.026 0.974 25 H 0.058 0.942 26 H 0.263 0.737 27 H 0.336 0.664 28 H 0.032 0.968 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.410 0.590 33 H 0.184 0.816 34 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.088 7.636 -20.028 21.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.109 3.891 3 H -0.005 1.005 4 C -0.579 4.579 5 H 0.078 0.922 6 C -0.184 4.184 7 N -0.555 5.555 8 Si 0.786 3.214 9 H -0.201 1.201 10 H -0.209 1.209 11 H -0.194 1.194 12 N -0.319 5.319 13 C -0.073 4.073 14 C 0.011 3.989 15 N -0.362 5.362 16 C 0.381 3.619 17 O -0.448 6.448 18 C -0.444 4.444 19 C -0.045 4.045 20 N -0.218 5.218 21 C -0.248 4.248 22 S 0.478 5.522 23 H 0.045 0.955 24 H 0.045 0.955 25 H 0.076 0.924 26 H 0.072 0.928 27 H 0.154 0.846 28 H 0.050 0.950 29 H 0.092 0.908 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.246 0.754 33 H 0.201 0.799 34 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 2.366 7.429 -19.947 21.417 hybrid contribution 1.102 -0.336 1.004 1.529 sum 3.468 7.093 -18.943 20.522 Atomic orbital electron populations 1.21568 0.97619 0.98941 0.99286 1.18918 0.92796 0.91003 0.86390 1.00534 1.21606 1.31804 1.12824 0.91667 0.92246 1.25693 0.95133 0.95674 1.01948 1.70001 1.37324 1.23977 1.24236 0.85516 0.78015 0.79042 0.78795 1.20097 1.20871 1.19413 1.60533 1.32638 1.33255 1.05440 1.22008 1.00722 0.94213 0.90381 1.21163 1.01530 0.92335 0.83882 1.45720 1.66618 1.14763 1.09074 1.16983 0.76726 0.86266 0.81915 1.90832 1.50630 1.18788 1.84532 1.25649 1.18807 1.00248 0.99719 1.22335 0.95489 0.99854 0.86782 1.66345 1.18947 0.99921 1.36620 1.29600 0.97465 1.00757 0.96960 1.83888 1.57074 1.00688 1.10572 0.95521 0.95455 0.92372 0.92776 0.84632 0.95019 0.90755 0.91213 0.91637 0.75361 0.79916 0.73744 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.60 9.19 71.98 0.66 -4.94 16 2 C 0.22 10.69 2.60 44.17 0.11 10.80 16 3 H -0.02 -1.22 7.80 -2.39 -0.02 -1.24 16 4 C -0.54 -29.12 8.59 25.60 0.22 -28.90 16 5 H 0.06 3.14 7.62 -2.91 -0.02 3.12 16 6 C 0.02 0.81 5.30 84.66 0.45 1.26 16 7 N -0.92 -51.60 11.32 21.45 0.24 -51.35 16 8 Si 0.96 42.79 29.54 68.60 2.03 44.82 16 9 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 12 N -0.69 -27.77 6.30 -495.47 -3.12 -30.90 16 13 C 0.06 1.81 5.60 86.30 0.48 2.29 16 14 C 0.13 3.82 5.93 86.38 0.51 4.33 16 15 N -0.71 -16.90 5.55 -467.09 -2.59 -19.49 16 16 C 0.59 15.81 7.79 86.45 0.67 16.49 16 17 O -0.57 -19.46 16.87 -4.32 -0.07 -19.54 16 18 C -0.32 -6.57 6.48 23.88 0.15 -6.41 16 19 C 0.11 2.35 11.09 84.23 0.93 3.28 16 20 N -0.50 -9.06 10.51 -202.57 -2.13 -11.19 16 21 C 0.05 0.49 12.22 130.60 1.60 2.08 16 22 S 0.22 2.63 22.35 -56.49 -1.26 1.37 16 23 H 0.03 1.12 7.45 -2.39 -0.02 1.10 16 24 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 25 H 0.06 3.09 6.07 -2.38 -0.01 3.08 16 26 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 27 H 0.34 13.30 8.22 -89.69 -0.74 12.56 16 28 H 0.03 0.99 8.05 -2.39 -0.02 0.97 16 29 H 0.07 2.32 7.44 -2.39 -0.02 2.30 16 30 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 32 H 0.41 7.60 7.66 -92.71 -0.71 6.89 16 33 H 0.18 3.73 8.06 -2.91 -0.02 3.71 16 34 H 0.25 0.38 8.06 -2.91 -0.02 0.35 16 Total: -1.00 -67.07 307.73 -1.42 -68.50 By element: Atomic # 1 Polarization: 17.80 SS G_CDS: -0.31 Total: 17.49 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: 5.80 Total: 0.29 kcal Atomic # 7 Polarization: -105.33 SS G_CDS: -7.60 Total: -112.93 kcal Atomic # 8 Polarization: -19.46 SS G_CDS: -0.07 Total: -19.54 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Atomic # 16 Polarization: 2.63 SS G_CDS: -1.26 Total: 1.37 kcal Total: -67.07 -1.42 -68.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381172960.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.290 kcal (2) G-P(sol) polarization free energy of solvation -67.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.497 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds