Wall clock time and date at job start Mon Mar 30 2020 05:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99751 * 2 1 4 4 H 1.48502 * 109.47245 * 270.00062 * 3 2 1 5 5 H 1.48508 * 109.47285 * 30.00279 * 3 2 1 6 6 H 1.48499 * 109.47170 * 150.00222 * 3 2 1 7 7 C 1.37874 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99350 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00310 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46886 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 180.02562 * 11 10 9 13 13 S 1.81002 * 109.47004 * 180.02562 * 12 11 10 14 14 C 1.76193 * 100.00049 * 180.02562 * 13 12 11 15 15 N 1.31625 * 119.53323 * 359.97438 * 14 13 12 16 16 C 1.34506 * 121.24945 * 179.97438 * 15 14 13 17 17 N 1.31010 * 119.89126 * 180.02562 * 16 15 14 18 18 N 1.38428 * 120.22024 * 0.02562 * 16 15 14 19 19 H 0.96993 * 120.45980 * 180.02562 * 18 16 15 20 20 C 1.38034 * 119.07540 * 359.97438 * 18 16 15 21 21 N 1.30239 * 120.59007 * 180.02562 * 20 18 16 22 22 N 1.37088 * 119.53434 * 179.72772 * 14 13 12 23 23 H 0.96999 * 120.15106 * 0.02562 * 22 14 13 24 24 H 0.96998 * 120.00187 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.46894 * 60.00012 * 9 7 2 26 26 H 1.09001 * 109.46436 * 299.99731 * 9 7 2 27 27 H 1.09001 * 109.46741 * 59.99975 * 10 9 7 28 28 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 29 29 H 1.09001 * 109.46652 * 60.00345 * 11 10 9 30 30 H 1.08992 * 109.47514 * 300.00434 * 11 10 9 31 31 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 32 32 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 33 33 H 0.96996 * 120.00124 * 359.97438 * 17 16 15 34 34 H 0.96996 * 119.99734 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0018 13 16 1.5697 -7.7175 -0.0018 14 6 2.9194 -8.8500 -0.0018 15 7 4.1526 -8.3898 -0.0023 16 6 5.2084 -9.2231 -0.0018 17 7 6.4246 -8.7360 -0.0019 18 7 5.0142 -10.5937 -0.0013 19 1 5.7731 -11.1978 -0.0006 20 6 3.7257 -11.0886 -0.0008 21 7 3.5090 -12.3729 0.0003 22 7 2.6704 -10.1981 0.0038 23 1 1.7572 -10.5249 0.0074 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8902 26 1 0.6248 -2.5570 0.8898 27 1 2.8726 -3.6046 0.8877 28 1 2.8713 -3.6039 -0.8923 29 1 0.8528 -5.0446 -0.8905 30 1 0.8546 -5.0450 0.8894 31 1 3.1007 -6.0922 -0.8922 32 1 3.1019 -6.0922 0.8878 33 1 6.5625 -7.7759 -0.0026 34 1 4.2567 -12.9908 0.0010 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385183363.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:00 Heat of formation + Delta-G solvation = 61.153840 kcal Electronic energy + Delta-G solvation = -17080.383611 eV Core-core repulsion = 14174.692466 eV Total energy + Delta-G solvation = -2905.691145 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.101 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -41.37439 -36.47969 -35.97325 -35.36683 -32.75649 -31.77206 -31.60794 -29.59610 -25.93145 -25.18747 -23.09884 -22.08474 -20.28060 -19.98211 -19.62382 -18.45430 -17.04477 -16.26552 -16.22696 -16.07985 -15.70719 -15.28878 -14.57818 -14.33019 -13.23928 -12.96063 -12.87688 -12.61867 -12.26440 -11.72912 -11.17200 -11.16122 -11.12519 -10.77569 -10.57740 -10.52286 -10.47603 -9.96525 -9.77369 -9.37889 -9.17513 -9.10118 -9.07515 -8.37926 -8.27260 -6.03060 -4.05534 0.46022 0.46373 1.67768 1.69346 2.10584 2.49763 3.22947 3.30476 3.37003 3.40317 4.11219 4.43727 4.72080 4.94910 5.00991 5.04680 5.33130 5.51002 5.58614 5.82441 5.94725 5.98331 6.16701 6.24587 6.59521 6.64205 6.75559 7.03370 7.43450 7.63219 7.64314 7.76182 7.96530 8.10760 8.38623 9.01620 9.58968 11.08234 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.039820 B = 0.002986 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.998900 B = 9374.906658 C =10046.853390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.056 3.944 3 Si 0.891 3.109 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.274 1.274 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.021 3.979 10 C -0.102 4.102 11 C -0.109 4.109 12 C -0.092 4.092 13 S 0.008 5.992 14 C 0.417 3.583 15 N -0.586 5.586 16 C 0.561 3.439 17 N -0.735 5.735 18 N -0.686 5.686 19 H 0.427 0.573 20 C 0.625 3.375 21 N -0.764 5.764 22 N -0.628 5.628 23 H 0.439 0.561 24 H 0.261 0.739 25 H 0.017 0.983 26 H 0.017 0.983 27 H 0.052 0.948 28 H 0.052 0.948 29 H 0.070 0.930 30 H 0.070 0.930 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.360 0.640 34 H 0.358 0.642 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.047 -21.525 0.005 21.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.145 4.145 3 Si 0.719 3.281 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.016 4.016 10 C -0.142 4.142 11 C -0.149 4.149 12 C -0.240 4.240 13 S 0.242 5.758 14 C 0.034 3.966 15 N -0.326 5.326 16 C 0.185 3.815 17 N -0.371 5.371 18 N -0.335 5.335 19 H 0.268 0.732 20 C 0.253 3.747 21 N -0.408 5.408 22 N -0.268 5.268 23 H 0.281 0.719 24 H 0.070 0.930 25 H 0.035 0.965 26 H 0.035 0.965 27 H 0.071 0.929 28 H 0.071 0.929 29 H 0.089 0.911 30 H 0.089 0.911 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.178 0.822 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 3.263 -21.756 0.012 22.000 hybrid contribution 2.067 0.787 -0.014 2.212 sum 5.330 -20.969 -0.002 21.636 Atomic orbital electron populations 1.69959 1.06055 1.26649 1.50848 1.25023 0.94850 0.99281 0.95304 0.86603 0.79868 0.83468 0.78125 1.20657 1.21224 1.19862 1.21252 0.93073 0.91054 1.50610 0.92649 1.19108 0.93972 0.91201 0.97355 1.21630 0.99156 0.92509 1.00899 1.21600 0.97232 0.92955 1.03087 1.23991 1.01454 0.90617 1.07966 1.86217 1.02846 0.99098 1.87670 1.25641 0.98538 0.85165 0.87253 1.70410 0.96049 1.33130 1.33035 1.19843 0.89457 0.81332 0.90847 1.69714 1.15744 1.23198 1.28469 1.43951 1.06821 1.06917 1.75843 0.73239 1.18951 0.78432 0.87761 0.89513 1.69547 1.39191 0.97297 1.34719 1.42308 1.09589 1.02699 1.72211 0.71921 0.92976 0.96496 0.96480 0.92909 0.92903 0.91130 0.91134 0.87973 0.87969 0.82152 0.82164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.41 13.29 55.43 0.74 -25.68 16 2 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 21.32 29.54 -169.99 -5.02 16.30 16 4 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 5 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 7 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 8 H 0.06 1.48 7.74 -52.48 -0.41 1.08 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.10 -1.89 5.15 -26.73 -0.14 -2.02 16 11 C -0.11 -1.54 5.22 -26.73 -0.14 -1.68 16 12 C -0.09 -1.06 4.82 37.16 0.18 -0.88 16 13 S 0.01 0.07 22.21 -107.50 -2.39 -2.32 16 14 C 0.42 4.16 8.00 -87.54 -0.70 3.46 16 15 N -0.59 -7.03 9.16 -13.51 -0.12 -7.15 16 16 C 0.56 6.88 8.73 -322.01 -2.81 4.07 16 17 N -0.73 -9.67 14.17 29.87 0.42 -9.25 16 18 N -0.69 -6.57 5.56 -14.10 -0.08 -6.65 16 19 H 0.43 3.28 8.88 -40.82 -0.36 2.92 16 20 C 0.62 5.74 8.87 -318.57 -2.83 2.91 16 21 N -0.76 -6.69 14.13 30.36 0.43 -6.26 16 22 N -0.63 -5.26 5.47 -12.93 -0.07 -5.33 16 23 H 0.44 2.71 8.85 -40.82 -0.36 2.35 16 24 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 25 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 28 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 29 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 31 H 0.10 1.20 8.12 -51.91 -0.42 0.78 16 32 H 0.10 1.20 8.12 -51.92 -0.42 0.78 16 33 H 0.36 4.67 8.90 -40.82 -0.36 4.31 16 34 H 0.36 2.52 8.85 -40.82 -0.36 2.16 16 LS Contribution 311.80 15.07 4.70 4.70 Total: -1.00 -30.95 311.80 -12.75 -43.70 By element: Atomic # 1 Polarization: 9.24 SS G_CDS: -4.37 Total: 4.87 kcal Atomic # 6 Polarization: 0.05 SS G_CDS: -6.98 Total: -6.93 kcal Atomic # 7 Polarization: -61.64 SS G_CDS: 1.32 Total: -60.32 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 0.07 SS G_CDS: -2.39 Total: -2.32 kcal Total LS contribution 4.70 Total: 4.70 kcal Total: -30.95 -12.75 -43.70 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385183363.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.855 kcal (2) G-P(sol) polarization free energy of solvation -30.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds