Wall clock time and date at job start Mon Mar 30 2020 05:15:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86798 * 119.99751 * 2 1 4 4 H 1.48502 * 109.47245 * 270.00062 * 3 2 1 5 5 H 1.48508 * 109.47285 * 30.00279 * 3 2 1 6 6 H 1.48499 * 109.47170 * 150.00222 * 3 2 1 7 7 C 1.37874 * 119.99776 * 180.02562 * 2 1 3 8 8 H 1.08009 * 119.99350 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00310 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46912 * 179.97438 * 9 7 2 11 11 C 1.53001 * 109.46886 * 179.97438 * 10 9 7 12 12 C 1.53000 * 109.46886 * 180.02562 * 11 10 9 13 13 S 1.81002 * 109.47004 * 180.02562 * 12 11 10 14 14 C 1.76193 * 100.00049 * 180.02562 * 13 12 11 15 15 N 1.31625 * 119.53323 * 359.97438 * 14 13 12 16 16 C 1.34506 * 121.24945 * 179.97438 * 15 14 13 17 17 N 1.31010 * 119.89126 * 180.02562 * 16 15 14 18 18 N 1.38428 * 120.22024 * 0.02562 * 16 15 14 19 19 H 0.96993 * 120.45980 * 180.02562 * 18 16 15 20 20 C 1.38034 * 119.07540 * 359.97438 * 18 16 15 21 21 N 1.30239 * 120.59007 * 180.02562 * 20 18 16 22 22 N 1.37088 * 119.53434 * 179.72772 * 14 13 12 23 23 H 0.96999 * 120.15106 * 0.02562 * 22 14 13 24 24 H 0.96998 * 120.00187 * 359.97438 * 1 2 3 25 25 H 1.08992 * 109.46894 * 60.00012 * 9 7 2 26 26 H 1.09001 * 109.46436 * 299.99731 * 9 7 2 27 27 H 1.09001 * 109.46741 * 59.99975 * 10 9 7 28 28 H 1.09002 * 109.47398 * 300.00078 * 10 9 7 29 29 H 1.09001 * 109.46652 * 60.00345 * 11 10 9 30 30 H 1.08992 * 109.47514 * 300.00434 * 11 10 9 31 31 H 1.09002 * 109.47398 * 300.00496 * 12 11 10 32 32 H 1.09001 * 109.47194 * 60.00677 * 12 11 10 33 33 H 0.96996 * 120.00124 * 359.97438 * 17 16 15 34 34 H 0.96996 * 119.99734 * 0.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 6 2.4746 -6.1500 -0.0018 13 16 1.5697 -7.7175 -0.0018 14 6 2.9194 -8.8500 -0.0018 15 7 4.1526 -8.3898 -0.0023 16 6 5.2084 -9.2231 -0.0018 17 7 6.4246 -8.7360 -0.0019 18 7 5.0142 -10.5937 -0.0013 19 1 5.7731 -11.1978 -0.0006 20 6 3.7257 -11.0886 -0.0008 21 7 3.5090 -12.3729 0.0003 22 7 2.6704 -10.1981 0.0038 23 1 1.7572 -10.5249 0.0074 24 1 -0.4850 0.8400 0.0004 25 1 0.6241 -2.5567 -0.8902 26 1 0.6248 -2.5570 0.8898 27 1 2.8726 -3.6046 0.8877 28 1 2.8713 -3.6039 -0.8923 29 1 0.8528 -5.0446 -0.8905 30 1 0.8546 -5.0450 0.8894 31 1 3.1007 -6.0922 -0.8922 32 1 3.1019 -6.0922 0.8878 33 1 6.5625 -7.7759 -0.0026 34 1 4.2567 -12.9908 0.0010 RHF calculation, no. of doubly occupied orbitals= 47 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385183363.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:15:00 Heat of formation + Delta-G solvation = 44.818240 kcal Electronic energy + Delta-G solvation = -17081.091975 eV Core-core repulsion = 14174.692466 eV Total energy + Delta-G solvation = -2906.399509 eV No. of doubly occupied orbitals = 47 Molecular weight (most abundant/longest-lived isotopes) = 269.101 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -42.15040 -37.29204 -36.85068 -36.74009 -34.65928 -32.65225 -32.37916 -31.23232 -27.24680 -26.44296 -24.03668 -23.50689 -21.80535 -20.75831 -20.44001 -19.25181 -18.38133 -17.81669 -17.03459 -16.88865 -16.57623 -16.45829 -16.43908 -15.35970 -14.53601 -14.53219 -13.78956 -13.77608 -13.58997 -13.35793 -12.89031 -12.53273 -12.35732 -12.30123 -11.94162 -11.76683 -11.38372 -11.29279 -11.24196 -11.01402 -10.84698 -10.51687 -9.92430 -9.86477 -9.08904 -8.17530 -6.27502 -0.34852 -0.34384 0.80962 0.92905 1.37502 1.42230 1.42523 1.53646 1.72230 2.38847 2.43163 3.16114 3.32074 3.89314 3.99743 4.03025 4.21874 4.41241 4.57071 4.73750 4.85506 4.89271 5.14265 5.15560 5.30027 5.32282 5.54244 5.58362 5.82265 5.91774 5.94034 6.29579 6.62792 6.90594 6.93373 7.25045 7.41683 8.94048 Molecular weight = 269.10amu Principal moments of inertia in cm(-1) A = 0.039820 B = 0.002986 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.998900 B = 9374.906658 C =10046.853390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.000 4.000 3 Si 0.960 3.040 4 H -0.273 1.273 5 H -0.283 1.283 6 H -0.264 1.264 7 C -0.543 4.543 8 H 0.059 0.941 9 C 0.021 3.979 10 C -0.092 4.092 11 C -0.099 4.099 12 C -0.095 4.095 13 S 0.060 5.940 14 C 0.417 3.583 15 N -0.610 5.610 16 C 0.558 3.442 17 N -0.758 5.758 18 N -0.680 5.680 19 H 0.434 0.566 20 C 0.618 3.382 21 N -0.761 5.761 22 N -0.618 5.618 23 H 0.450 0.550 24 H 0.263 0.737 25 H -0.005 1.005 26 H -0.005 1.005 27 H 0.054 0.946 28 H 0.054 0.946 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.102 0.898 32 H 0.102 0.898 33 H 0.356 0.644 34 H 0.367 0.633 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.331 -22.581 -0.001 22.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.198 4.198 3 Si 0.785 3.215 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.077 0.923 9 C -0.016 4.016 10 C -0.132 4.132 11 C -0.139 4.139 12 C -0.244 4.244 13 S 0.294 5.706 14 C 0.035 3.965 15 N -0.352 5.352 16 C 0.182 3.818 17 N -0.396 5.396 18 N -0.330 5.330 19 H 0.276 0.724 20 C 0.247 3.753 21 N -0.405 5.405 22 N -0.259 5.259 23 H 0.294 0.706 24 H 0.072 0.928 25 H 0.013 0.987 26 H 0.013 0.987 27 H 0.073 0.927 28 H 0.073 0.927 29 H 0.091 0.909 30 H 0.091 0.909 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.174 0.826 34 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges 3.522 -22.866 0.005 23.136 hybrid contribution 1.886 1.021 -0.012 2.145 sum 5.408 -21.845 -0.007 22.504 Atomic orbital electron populations 1.70082 1.07664 1.27667 1.51928 1.25933 0.95741 1.03185 0.94949 0.85524 0.78728 0.78839 0.78432 1.19887 1.20851 1.18874 1.21755 0.93576 0.92621 1.50116 0.92307 1.19040 0.94540 0.92894 0.95117 1.21400 0.97984 0.92736 1.01077 1.21347 0.97237 0.91895 1.03389 1.23732 1.00930 0.91602 1.08090 1.86038 1.00643 0.96756 1.87174 1.25769 0.98353 0.85929 0.86475 1.70380 0.96622 1.33645 1.34521 1.20014 0.89437 0.82196 0.90137 1.69732 1.16455 1.22980 1.30399 1.43927 1.07419 1.06162 1.75461 0.72356 1.19045 0.78390 0.87934 0.89922 1.69552 1.39788 0.97182 1.34015 1.42248 1.10106 1.02093 1.71435 0.70607 0.92835 0.98703 0.98687 0.92720 0.92692 0.90860 0.90867 0.87970 0.87972 0.82610 0.81123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.86 13.29 21.45 0.28 -55.58 16 2 C 0.00 -0.03 5.46 84.65 0.46 0.44 16 3 Si 0.96 43.73 29.54 68.60 2.03 45.76 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 7 C -0.54 -30.15 9.11 25.60 0.23 -29.92 16 8 H 0.06 3.14 7.74 -2.91 -0.02 3.12 16 9 C 0.02 1.07 4.97 29.85 0.15 1.22 16 10 C -0.09 -3.39 5.15 30.59 0.16 -3.23 16 11 C -0.10 -2.70 5.22 30.59 0.16 -2.54 16 12 C -0.09 -2.03 4.82 71.98 0.35 -1.68 16 13 S 0.06 0.96 22.21 -56.49 -1.25 -0.29 16 14 C 0.42 7.49 8.00 179.27 1.43 8.92 16 15 N -0.61 -13.85 9.16 -196.65 -1.80 -15.65 16 16 C 0.56 13.17 8.73 261.21 2.28 15.45 16 17 N -0.76 -19.74 14.17 -59.40 -0.84 -20.58 16 18 N -0.68 -12.09 5.56 -198.54 -1.10 -13.19 16 19 H 0.43 6.14 8.88 -92.71 -0.82 5.31 16 20 C 0.62 10.14 8.87 260.01 2.31 12.44 16 21 N -0.76 -11.68 14.13 -57.85 -0.82 -12.49 16 22 N -0.62 -8.95 5.47 -194.82 -1.07 -10.02 16 23 H 0.45 4.35 8.85 -92.71 -0.82 3.53 16 24 H 0.26 14.81 8.31 -92.71 -0.77 14.04 16 25 H -0.01 -0.29 8.14 -2.39 -0.02 -0.31 16 26 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 27 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 28 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 30 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.10 2.24 8.12 -2.39 -0.02 2.22 16 32 H 0.10 2.24 8.12 -2.39 -0.02 2.22 16 33 H 0.36 9.29 8.90 -92.71 -0.82 8.47 16 34 H 0.37 4.41 8.85 -92.71 -0.82 3.59 16 Total: -1.00 -66.24 311.80 0.84 -65.41 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: -2.12 Total: 15.54 kcal Atomic # 6 Polarization: -6.43 SS G_CDS: 7.53 Total: 1.10 kcal Atomic # 7 Polarization: -122.17 SS G_CDS: -5.35 Total: -127.52 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.03 Total: 45.76 kcal Atomic # 16 Polarization: 0.96 SS G_CDS: -1.25 Total: -0.29 kcal Total: -66.24 0.84 -65.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385183363.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.226 kcal (2) G-P(sol) polarization free energy of solvation -66.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds