Wall clock time and date at job start Mon Mar 30 2020 05:28:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31518 * 1
3 3 Si 1.86805 * 119.99744 * 2 1
4 4 H 1.48500 * 109.46813 * 240.00078 * 3 2 1
5 5 H 1.48499 * 109.46905 * 359.97438 * 3 2 1
6 6 H 1.48494 * 109.47365 * 120.00148 * 3 2 1
7 7 C 1.37871 * 120.00101 * 179.97438 * 2 1 3
8 8 H 1.08004 * 119.99854 * 180.02562 * 7 2 1
9 9 C 1.50694 * 120.00358 * 359.97438 * 7 2 1
10 10 O 1.42898 * 109.47357 * 179.97438 * 9 7 2
11 11 C 1.42906 * 113.99824 * 180.02562 * 10 9 7
12 12 C 1.53006 * 109.46752 * 180.02562 * 11 10 9
13 13 O 1.42903 * 109.47256 * 65.00003 * 12 11 10
14 14 C 1.35952 * 116.99999 * 179.97438 * 13 12 11
15 15 C 1.38950 * 120.06063 * 89.99579 * 14 13 12
16 16 F 1.35098 * 120.05004 * 0.02562 * 15 14 13
17 17 C 1.38295 * 119.90103 * 179.97438 * 15 14 13
18 18 C 1.38297 * 120.02980 * 0.02657 * 17 15 14
19 19 C 1.38214 * 120.12771 * 359.97438 * 18 17 15
20 20 C 1.38227 * 120.09731 * 359.73876 * 19 18 17
21 21 C 1.50701 * 120.02012 * 180.25957 * 20 19 18
22 22 N 1.46902 * 109.46876 * 260.27992 * 21 20 19
23 23 H 0.96999 * 119.99956 * 359.97438 * 1 2 3
24 24 H 1.09008 * 109.47126 * 60.00138 * 9 7 2
25 25 H 1.09002 * 109.47402 * 300.00369 * 9 7 2
26 26 H 1.08993 * 109.47732 * 60.00254 * 11 10 9
27 27 H 1.09000 * 109.47141 * 299.99893 * 11 10 9
28 28 H 1.09004 * 109.46579 * 184.99441 * 12 11 10
29 29 H 1.08992 * 109.47046 * 304.99625 * 12 11 10
30 30 H 1.08002 * 119.98326 * 179.97438 * 17 15 14
31 31 H 1.08008 * 119.93430 * 179.97438 * 18 17 15
32 32 H 1.08007 * 119.95358 * 180.02562 * 19 18 17
33 33 H 1.08998 * 109.46707 * 20.27393 * 21 20 19
34 34 H 1.08998 * 109.47025 * 140.27450 * 21 20 19
35 35 H 1.00896 * 111.00335 * 56.04662 * 22 21 20
36 36 H 1.00896 * 110.99783 * 180.02562 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.1028 1.6965 -1.2125
5 1 1.2840 2.7465 -0.0006
6 1 3.1029 1.6966 1.2124
7 6 2.0046 -1.1940 0.0005
8 1 3.0846 -1.1939 0.0010
9 6 1.2512 -2.4991 0.0017
10 8 2.1798 -3.5852 0.0015
11 6 1.5653 -4.8754 0.0019
12 6 2.6483 -5.9561 0.0023
13 8 3.3878 -5.8891 1.2233
14 6 4.3947 -6.7881 1.3852
15 6 5.6803 -6.4775 0.9593
16 9 5.9319 -5.2813 0.3841
17 6 6.7022 -7.3943 1.1262
18 6 6.4443 -8.6185 1.7155
19 6 5.1659 -8.9288 2.1396
20 6 4.1418 -8.0141 1.9808
21 6 2.7499 -8.3519 2.4491
22 7 1.9387 -8.7829 1.3027
23 1 -0.4850 0.8400 0.0004
24 1 0.6242 -2.5575 -0.8881
25 1 0.6248 -2.5563 0.8919
26 1 0.9448 -4.9827 -0.8877
27 1 0.9455 -4.9823 0.8922
28 1 2.1823 -6.9375 -0.0868
29 1 3.3218 -5.7958 -0.8396
30 1 7.7019 -7.1544 0.7953
31 1 7.2435 -9.3335 1.8447
32 1 4.9678 -9.8855 2.5999
33 1 2.7987 -9.1566 3.1827
34 1 2.2963 -7.4718 2.9049
35 1 2.3722 -9.5580 0.8240
36 1 1.0000 -9.0148 1.5908
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000385264689.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:28:54
Heat of formation + Delta-G solvation = -105.712711 kcal
Electronic energy + Delta-G solvation = -20282.241644 eV
Core-core repulsion = 16874.349039 eV
Total energy + Delta-G solvation = -3407.892605 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 269.121 amu
Computer time = 0.33 seconds
Orbital eigenvalues (eV)
-48.68488 -39.94490 -37.53019 -36.22333 -34.92903 -32.67788 -30.74781 -30.42456
-28.84959 -26.72919 -25.26640 -22.81927 -22.29332 -21.85422 -21.43939 -17.96049
-17.12834 -17.02115 -16.38608 -15.91614 -15.64010 -15.50938 -15.20452 -14.74027
-14.48957 -14.38471 -14.01860 -13.80468 -13.49940 -13.18819 -12.76379 -12.46513
-12.17090 -11.99909 -11.75830 -11.29637 -11.21220 -10.77760 -10.72804 -10.48251
-9.93513 -9.62217 -9.05519 -9.00442 -8.86451 -8.75015 -8.59078 -8.08084
-6.03181 -4.04018 0.93760 0.98776 3.22426 3.38780 3.40236 3.45449
3.86839 4.17132 4.41649 4.42689 4.56429 4.65300 4.96718 4.99360
5.04357 5.22431 5.33048 5.33272 5.59115 5.66880 5.70852 5.82076
5.95602 6.09892 6.10812 6.18077 6.22776 6.32354 6.61022 6.83273
7.16603 7.17729 7.51402 7.72857 7.88403 8.24136 8.67732 9.09889
9.60437 11.08514
Molecular weight = 269.12amu
Principal moments of inertia in cm(-1)
A = 0.025551 B = 0.004205 C = 0.003734
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1095.584013 B = 6656.877557 C = 7497.679674
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.901 5.901
2 C 0.056 3.944
3 Si 0.908 3.092
4 H -0.275 1.275
5 H -0.286 1.286
6 H -0.275 1.275
7 C -0.512 4.512
8 H 0.066 0.934
9 C 0.194 3.806
10 O -0.389 6.389
11 C 0.067 3.933
12 C 0.072 3.928
13 O -0.313 6.313
14 C 0.096 3.904
15 C 0.081 3.919
16 F -0.124 7.124
17 C -0.145 4.145
18 C -0.105 4.105
19 C -0.117 4.117
20 C -0.087 4.087
21 C 0.105 3.895
22 N -0.843 5.843
23 H 0.264 0.736
24 H 0.004 0.996
25 H 0.005 0.995
26 H 0.055 0.945
27 H 0.046 0.954
28 H 0.090 0.910
29 H 0.049 0.951
30 H 0.137 0.863
31 H 0.132 0.868
32 H 0.128 0.872
33 H 0.038 0.962
34 H 0.092 0.908
35 H 0.340 0.660
36 H 0.347 0.653
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 8.254 -22.669 3.670 24.403
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.540 5.540
2 C -0.145 4.145
3 Si 0.735 3.265
4 H -0.200 1.200
5 H -0.212 1.212
6 H -0.200 1.200
7 C -0.550 4.550
8 H 0.084 0.916
9 C 0.120 3.880
10 O -0.309 6.309
11 C -0.011 4.011
12 C -0.002 4.002
13 O -0.230 6.230
14 C 0.050 3.950
15 C 0.061 3.939
16 F -0.102 7.102
17 C -0.164 4.164
18 C -0.123 4.123
19 C -0.136 4.136
20 C -0.088 4.088
21 C -0.025 4.025
22 N -0.374 5.374
23 H 0.073 0.927
24 H 0.022 0.978
25 H 0.023 0.977
26 H 0.073 0.927
27 H 0.064 0.936
28 H 0.107 0.893
29 H 0.068 0.932
30 H 0.155 0.845
31 H 0.150 0.850
32 H 0.146 0.854
33 H 0.057 0.943
34 H 0.110 0.890
35 H 0.152 0.848
36 H 0.160 0.840
Dipole moment (debyes) X Y Z Total
from point charges 8.341 -21.575 3.488 23.393
hybrid contribution 0.150 0.105 0.263 0.320
sum 8.492 -21.470 3.751 23.391
Atomic orbital electron populations
1.69959 1.06081 1.27146 1.50849 1.24937 0.94965 0.99362 0.95221
0.86398 0.79305 0.81915 0.78878 1.20024 1.21192 1.20002 1.21046
0.94107 0.89403 1.50480 0.91577 1.20194 0.88786 0.83727 0.95279
1.87947 1.35126 1.12704 1.95153 1.22256 0.93559 0.85409 0.99889
1.23097 0.93300 0.99447 0.84341 1.86127 1.44631 1.52714 1.39550
1.18605 0.87279 0.90103 0.99015 1.18282 0.94163 0.83026 0.98441
1.91575 1.94572 1.42411 1.81665 1.21131 0.98885 0.94091 1.02278
1.20918 0.96976 0.96037 0.98352 1.20975 0.92454 0.99077 1.01056
1.20026 0.96319 0.92454 1.00008 1.20599 0.89690 1.00592 0.91581
1.58651 1.06147 1.44448 1.28106 0.92691 0.97796 0.97689 0.92664
0.93588 0.89263 0.93240 0.84488 0.84980 0.85437 0.94339 0.89010
0.84796 0.83954
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.90 -27.79 13.29 55.43 0.74 -27.06 16
2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16
3 Si 0.91 22.72 29.54 -169.99 -5.02 17.70 16
4 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16
5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16
6 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16
7 C -0.51 -15.90 9.43 -34.45 -0.32 -16.22 16
8 H 0.07 2.06 7.81 -52.48 -0.41 1.65 16
9 C 0.19 5.65 5.69 36.00 0.20 5.85 16
10 O -0.39 -10.28 10.29 -40.08 -0.41 -10.69 16
11 C 0.07 1.34 6.32 37.16 0.23 1.58 16
12 C 0.07 1.25 6.44 37.16 0.24 1.49 16
13 O -0.31 -5.85 9.12 -24.44 -0.22 -6.07 16
14 C 0.10 1.48 5.70 -39.18 -0.22 1.26 16
15 C 0.08 1.23 7.31 -39.30 -0.29 0.94 16
16 F -0.12 -2.26 17.11 2.25 0.04 -2.22 16
17 C -0.14 -1.62 10.02 -39.54 -0.40 -2.02 16
18 C -0.10 -0.93 10.04 -39.57 -0.40 -1.32 16
19 C -0.12 -1.05 9.66 -39.59 -0.38 -1.43 16
20 C -0.09 -1.01 5.40 -104.48 -0.56 -1.58 16
21 C 0.11 1.04 6.57 -4.97 -0.03 1.00 16
22 N -0.84 -7.22 7.85 -11.41 -0.09 -7.31 16
23 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16
24 H 0.00 0.12 8.14 -51.92 -0.42 -0.30 16
25 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16
26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16
27 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16
28 H 0.09 1.30 6.29 -51.93 -0.33 0.97 16
29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16
30 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16
31 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16
32 H 0.13 0.79 8.04 -52.48 -0.42 0.36 16
33 H 0.04 0.29 8.01 -51.93 -0.42 -0.13 16
34 H 0.09 1.09 7.85 -51.93 -0.41 0.68 16
35 H 0.34 2.39 8.98 -39.29 -0.35 2.03 16
36 H 0.35 2.34 9.08 -39.29 -0.36 1.98 16
LS Contribution 317.78 15.07 4.79 4.79
Total: -1.00 -35.04 317.78 -7.00 -42.03
By element:
Atomic # 1 Polarization: 2.49 SS G_CDS: -4.79 Total: -2.29 kcal
Atomic # 6 Polarization: -6.85 SS G_CDS: -2.03 Total: -8.88 kcal
Atomic # 7 Polarization: -35.02 SS G_CDS: 0.65 Total: -34.37 kcal
Atomic # 8 Polarization: -16.13 SS G_CDS: -0.64 Total: -16.76 kcal
Atomic # 9 Polarization: -2.26 SS G_CDS: 0.04 Total: -2.22 kcal
Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal
Total LS contribution 4.79 Total: 4.79 kcal
Total: -35.04 -7.00 -42.03 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385264689.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -63.679 kcal
(2) G-P(sol) polarization free energy of solvation -35.039 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.717 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.995 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.034 kcal
(6) G-S(sol) free energy of system = (1) + (5) -105.713 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.33 seconds