Wall clock time and date at job start Mon Mar 30 2020 05:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99744 * 2 1 4 4 H 1.48500 * 109.46813 * 240.00078 * 3 2 1 5 5 H 1.48499 * 109.46905 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47365 * 120.00148 * 3 2 1 7 7 C 1.37871 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99854 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00358 * 359.97438 * 7 2 1 10 10 O 1.42898 * 109.47357 * 179.97438 * 9 7 2 11 11 C 1.42906 * 113.99824 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46752 * 180.02562 * 11 10 9 13 13 O 1.42903 * 109.47256 * 65.00003 * 12 11 10 14 14 C 1.35952 * 116.99999 * 179.97438 * 13 12 11 15 15 C 1.38950 * 120.06063 * 89.99579 * 14 13 12 16 16 F 1.35098 * 120.05004 * 0.02562 * 15 14 13 17 17 C 1.38295 * 119.90103 * 179.97438 * 15 14 13 18 18 C 1.38297 * 120.02980 * 0.02657 * 17 15 14 19 19 C 1.38214 * 120.12771 * 359.97438 * 18 17 15 20 20 C 1.38227 * 120.09731 * 359.73876 * 19 18 17 21 21 C 1.50701 * 120.02012 * 180.25957 * 20 19 18 22 22 N 1.46902 * 109.46876 * 260.27992 * 21 20 19 23 23 H 0.96999 * 119.99956 * 359.97438 * 1 2 3 24 24 H 1.09008 * 109.47126 * 60.00138 * 9 7 2 25 25 H 1.09002 * 109.47402 * 300.00369 * 9 7 2 26 26 H 1.08993 * 109.47732 * 60.00254 * 11 10 9 27 27 H 1.09000 * 109.47141 * 299.99893 * 11 10 9 28 28 H 1.09004 * 109.46579 * 184.99441 * 12 11 10 29 29 H 1.08992 * 109.47046 * 304.99625 * 12 11 10 30 30 H 1.08002 * 119.98326 * 179.97438 * 17 15 14 31 31 H 1.08008 * 119.93430 * 179.97438 * 18 17 15 32 32 H 1.08007 * 119.95358 * 180.02562 * 19 18 17 33 33 H 1.08998 * 109.46707 * 20.27393 * 21 20 19 34 34 H 1.08998 * 109.47025 * 140.27450 * 21 20 19 35 35 H 1.00896 * 111.00335 * 56.04662 * 22 21 20 36 36 H 1.00896 * 110.99783 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1029 1.6966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 8 2.1798 -3.5852 0.0015 11 6 1.5653 -4.8754 0.0019 12 6 2.6483 -5.9561 0.0023 13 8 3.3878 -5.8891 1.2233 14 6 4.3947 -6.7881 1.3852 15 6 5.6803 -6.4775 0.9593 16 9 5.9319 -5.2813 0.3841 17 6 6.7022 -7.3943 1.1262 18 6 6.4443 -8.6185 1.7155 19 6 5.1659 -8.9288 2.1396 20 6 4.1418 -8.0141 1.9808 21 6 2.7499 -8.3519 2.4491 22 7 1.9387 -8.7829 1.3027 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5575 -0.8881 25 1 0.6248 -2.5563 0.8919 26 1 0.9448 -4.9827 -0.8877 27 1 0.9455 -4.9823 0.8922 28 1 2.1823 -6.9375 -0.0868 29 1 3.3218 -5.7958 -0.8396 30 1 7.7019 -7.1544 0.7953 31 1 7.2435 -9.3335 1.8447 32 1 4.9678 -9.8855 2.5999 33 1 2.7987 -9.1566 3.1827 34 1 2.2963 -7.4718 2.9049 35 1 2.3722 -9.5580 0.8240 36 1 1.0000 -9.0148 1.5908 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385264689.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:54 Heat of formation + Delta-G solvation = -105.712711 kcal Electronic energy + Delta-G solvation = -20282.241644 eV Core-core repulsion = 16874.349039 eV Total energy + Delta-G solvation = -3407.892605 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -48.68488 -39.94490 -37.53019 -36.22333 -34.92903 -32.67788 -30.74781 -30.42456 -28.84959 -26.72919 -25.26640 -22.81927 -22.29332 -21.85422 -21.43939 -17.96049 -17.12834 -17.02115 -16.38608 -15.91614 -15.64010 -15.50938 -15.20452 -14.74027 -14.48957 -14.38471 -14.01860 -13.80468 -13.49940 -13.18819 -12.76379 -12.46513 -12.17090 -11.99909 -11.75830 -11.29637 -11.21220 -10.77760 -10.72804 -10.48251 -9.93513 -9.62217 -9.05519 -9.00442 -8.86451 -8.75015 -8.59078 -8.08084 -6.03181 -4.04018 0.93760 0.98776 3.22426 3.38780 3.40236 3.45449 3.86839 4.17132 4.41649 4.42689 4.56429 4.65300 4.96718 4.99360 5.04357 5.22431 5.33048 5.33272 5.59115 5.66880 5.70852 5.82076 5.95602 6.09892 6.10812 6.18077 6.22776 6.32354 6.61022 6.83273 7.16603 7.17729 7.51402 7.72857 7.88403 8.24136 8.67732 9.09889 9.60437 11.08514 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.025551 B = 0.004205 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.584013 B = 6656.877557 C = 7497.679674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.275 1.275 5 H -0.286 1.286 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.066 0.934 9 C 0.194 3.806 10 O -0.389 6.389 11 C 0.067 3.933 12 C 0.072 3.928 13 O -0.313 6.313 14 C 0.096 3.904 15 C 0.081 3.919 16 F -0.124 7.124 17 C -0.145 4.145 18 C -0.105 4.105 19 C -0.117 4.117 20 C -0.087 4.087 21 C 0.105 3.895 22 N -0.843 5.843 23 H 0.264 0.736 24 H 0.004 0.996 25 H 0.005 0.995 26 H 0.055 0.945 27 H 0.046 0.954 28 H 0.090 0.910 29 H 0.049 0.951 30 H 0.137 0.863 31 H 0.132 0.868 32 H 0.128 0.872 33 H 0.038 0.962 34 H 0.092 0.908 35 H 0.340 0.660 36 H 0.347 0.653 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.254 -22.669 3.670 24.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.550 4.550 8 H 0.084 0.916 9 C 0.120 3.880 10 O -0.309 6.309 11 C -0.011 4.011 12 C -0.002 4.002 13 O -0.230 6.230 14 C 0.050 3.950 15 C 0.061 3.939 16 F -0.102 7.102 17 C -0.164 4.164 18 C -0.123 4.123 19 C -0.136 4.136 20 C -0.088 4.088 21 C -0.025 4.025 22 N -0.374 5.374 23 H 0.073 0.927 24 H 0.022 0.978 25 H 0.023 0.977 26 H 0.073 0.927 27 H 0.064 0.936 28 H 0.107 0.893 29 H 0.068 0.932 30 H 0.155 0.845 31 H 0.150 0.850 32 H 0.146 0.854 33 H 0.057 0.943 34 H 0.110 0.890 35 H 0.152 0.848 36 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges 8.341 -21.575 3.488 23.393 hybrid contribution 0.150 0.105 0.263 0.320 sum 8.492 -21.470 3.751 23.391 Atomic orbital electron populations 1.69959 1.06081 1.27146 1.50849 1.24937 0.94965 0.99362 0.95221 0.86398 0.79305 0.81915 0.78878 1.20024 1.21192 1.20002 1.21046 0.94107 0.89403 1.50480 0.91577 1.20194 0.88786 0.83727 0.95279 1.87947 1.35126 1.12704 1.95153 1.22256 0.93559 0.85409 0.99889 1.23097 0.93300 0.99447 0.84341 1.86127 1.44631 1.52714 1.39550 1.18605 0.87279 0.90103 0.99015 1.18282 0.94163 0.83026 0.98441 1.91575 1.94572 1.42411 1.81665 1.21131 0.98885 0.94091 1.02278 1.20918 0.96976 0.96037 0.98352 1.20975 0.92454 0.99077 1.01056 1.20026 0.96319 0.92454 1.00008 1.20599 0.89690 1.00592 0.91581 1.58651 1.06147 1.44448 1.28106 0.92691 0.97796 0.97689 0.92664 0.93588 0.89263 0.93240 0.84488 0.84980 0.85437 0.94339 0.89010 0.84796 0.83954 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.79 13.29 55.43 0.74 -27.06 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.91 22.72 29.54 -169.99 -5.02 17.70 16 4 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 6 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 7 C -0.51 -15.90 9.43 -34.45 -0.32 -16.22 16 8 H 0.07 2.06 7.81 -52.48 -0.41 1.65 16 9 C 0.19 5.65 5.69 36.00 0.20 5.85 16 10 O -0.39 -10.28 10.29 -40.08 -0.41 -10.69 16 11 C 0.07 1.34 6.32 37.16 0.23 1.58 16 12 C 0.07 1.25 6.44 37.16 0.24 1.49 16 13 O -0.31 -5.85 9.12 -24.44 -0.22 -6.07 16 14 C 0.10 1.48 5.70 -39.18 -0.22 1.26 16 15 C 0.08 1.23 7.31 -39.30 -0.29 0.94 16 16 F -0.12 -2.26 17.11 2.25 0.04 -2.22 16 17 C -0.14 -1.62 10.02 -39.54 -0.40 -2.02 16 18 C -0.10 -0.93 10.04 -39.57 -0.40 -1.32 16 19 C -0.12 -1.05 9.66 -39.59 -0.38 -1.43 16 20 C -0.09 -1.01 5.40 -104.48 -0.56 -1.58 16 21 C 0.11 1.04 6.57 -4.97 -0.03 1.00 16 22 N -0.84 -7.22 7.85 -11.41 -0.09 -7.31 16 23 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 24 H 0.00 0.12 8.14 -51.92 -0.42 -0.30 16 25 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.09 1.30 6.29 -51.93 -0.33 0.97 16 29 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.14 1.25 8.06 -52.49 -0.42 0.83 16 31 H 0.13 0.76 8.06 -52.48 -0.42 0.34 16 32 H 0.13 0.79 8.04 -52.48 -0.42 0.36 16 33 H 0.04 0.29 8.01 -51.93 -0.42 -0.13 16 34 H 0.09 1.09 7.85 -51.93 -0.41 0.68 16 35 H 0.34 2.39 8.98 -39.29 -0.35 2.03 16 36 H 0.35 2.34 9.08 -39.29 -0.36 1.98 16 LS Contribution 317.78 15.07 4.79 4.79 Total: -1.00 -35.04 317.78 -7.00 -42.03 By element: Atomic # 1 Polarization: 2.49 SS G_CDS: -4.79 Total: -2.29 kcal Atomic # 6 Polarization: -6.85 SS G_CDS: -2.03 Total: -8.88 kcal Atomic # 7 Polarization: -35.02 SS G_CDS: 0.65 Total: -34.37 kcal Atomic # 8 Polarization: -16.13 SS G_CDS: -0.64 Total: -16.76 kcal Atomic # 9 Polarization: -2.26 SS G_CDS: 0.04 Total: -2.22 kcal Atomic # 14 Polarization: 22.72 SS G_CDS: -5.02 Total: 17.70 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -35.04 -7.00 -42.03 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385264689.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.679 kcal (2) G-P(sol) polarization free energy of solvation -35.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.034 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.713 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds