Wall clock time and date at job start Mon Mar 30 2020 05:28:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86805 * 119.99744 * 2 1 4 4 H 1.48500 * 109.46813 * 240.00078 * 3 2 1 5 5 H 1.48499 * 109.46905 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47365 * 120.00148 * 3 2 1 7 7 C 1.37871 * 120.00101 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99854 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00358 * 359.97438 * 7 2 1 10 10 O 1.42898 * 109.47357 * 179.97438 * 9 7 2 11 11 C 1.42906 * 113.99824 * 180.02562 * 10 9 7 12 12 C 1.53006 * 109.46752 * 180.02562 * 11 10 9 13 13 O 1.42903 * 109.47256 * 65.00003 * 12 11 10 14 14 C 1.35952 * 116.99999 * 179.97438 * 13 12 11 15 15 C 1.38950 * 120.06063 * 89.99579 * 14 13 12 16 16 F 1.35098 * 120.05004 * 0.02562 * 15 14 13 17 17 C 1.38295 * 119.90103 * 179.97438 * 15 14 13 18 18 C 1.38297 * 120.02980 * 0.02657 * 17 15 14 19 19 C 1.38214 * 120.12771 * 359.97438 * 18 17 15 20 20 C 1.38227 * 120.09731 * 359.73876 * 19 18 17 21 21 C 1.50701 * 120.02012 * 180.25957 * 20 19 18 22 22 N 1.46902 * 109.46876 * 260.27992 * 21 20 19 23 23 H 0.96999 * 119.99956 * 359.97438 * 1 2 3 24 24 H 1.09008 * 109.47126 * 60.00138 * 9 7 2 25 25 H 1.09002 * 109.47402 * 300.00369 * 9 7 2 26 26 H 1.08993 * 109.47732 * 60.00254 * 11 10 9 27 27 H 1.09000 * 109.47141 * 299.99893 * 11 10 9 28 28 H 1.09004 * 109.46579 * 184.99441 * 12 11 10 29 29 H 1.08992 * 109.47046 * 304.99625 * 12 11 10 30 30 H 1.08002 * 119.98326 * 179.97438 * 17 15 14 31 31 H 1.08008 * 119.93430 * 179.97438 * 18 17 15 32 32 H 1.08007 * 119.95358 * 180.02562 * 19 18 17 33 33 H 1.08998 * 109.46707 * 20.27393 * 21 20 19 34 34 H 1.08998 * 109.47025 * 140.27450 * 21 20 19 35 35 H 1.00896 * 111.00335 * 56.04662 * 22 21 20 36 36 H 1.00896 * 110.99783 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1029 1.6966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0017 10 8 2.1798 -3.5852 0.0015 11 6 1.5653 -4.8754 0.0019 12 6 2.6483 -5.9561 0.0023 13 8 3.3878 -5.8891 1.2233 14 6 4.3947 -6.7881 1.3852 15 6 5.6803 -6.4775 0.9593 16 9 5.9319 -5.2813 0.3841 17 6 6.7022 -7.3943 1.1262 18 6 6.4443 -8.6185 1.7155 19 6 5.1659 -8.9288 2.1396 20 6 4.1418 -8.0141 1.9808 21 6 2.7499 -8.3519 2.4491 22 7 1.9387 -8.7829 1.3027 23 1 -0.4850 0.8400 0.0004 24 1 0.6242 -2.5575 -0.8881 25 1 0.6248 -2.5563 0.8919 26 1 0.9448 -4.9827 -0.8877 27 1 0.9455 -4.9823 0.8922 28 1 2.1823 -6.9375 -0.0868 29 1 3.3218 -5.7958 -0.8396 30 1 7.7019 -7.1544 0.7953 31 1 7.2435 -9.3335 1.8447 32 1 4.9678 -9.8855 2.5999 33 1 2.7987 -9.1566 3.1827 34 1 2.2963 -7.4718 2.9049 35 1 2.3722 -9.5580 0.8240 36 1 1.0000 -9.0148 1.5908 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385264689.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:54 Heat of formation + Delta-G solvation = -131.381989 kcal Electronic energy + Delta-G solvation = -20283.354748 eV Core-core repulsion = 16874.349039 eV Total energy + Delta-G solvation = -3409.005708 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.90548 -40.96251 -38.95834 -37.93828 -35.68236 -34.97153 -32.02652 -31.33347 -30.21494 -28.86345 -26.07083 -24.59754 -23.95394 -23.17660 -22.37973 -19.10048 -18.69146 -18.22448 -17.99773 -17.42499 -17.00954 -16.59861 -16.55675 -16.38905 -15.82137 -15.69032 -15.40937 -15.11334 -14.72961 -14.28741 -14.20826 -13.69017 -13.52496 -13.25369 -13.06985 -12.86648 -12.82260 -12.69952 -12.35194 -12.15005 -11.82097 -11.35000 -10.93135 -10.84197 -10.28740 -9.87123 -9.62537 -9.52669 -8.34503 -6.47250 0.02681 0.09661 1.36885 1.42574 1.51028 2.30767 2.33191 2.79337 2.98518 3.16191 3.20708 3.64862 3.81378 3.96429 4.12315 4.20729 4.21746 4.26816 4.35423 4.49961 4.57900 4.67717 4.70089 4.82866 4.87350 5.02230 5.12163 5.14295 5.30381 5.38169 5.51443 5.73377 5.93065 6.22138 6.47612 6.55617 6.64574 6.78861 7.24476 8.77816 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.025551 B = 0.004205 C = 0.003734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.584013 B = 6656.877557 C = 7497.679674 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.009 3.991 3 Si 0.984 3.016 4 H -0.265 1.265 5 H -0.269 1.269 6 H -0.268 1.268 7 C -0.554 4.554 8 H 0.055 0.945 9 C 0.209 3.791 10 O -0.412 6.412 11 C 0.057 3.943 12 C 0.084 3.916 13 O -0.345 6.345 14 C 0.056 3.944 15 C 0.036 3.964 16 F -0.156 7.156 17 C -0.143 4.143 18 C -0.088 4.088 19 C -0.101 4.101 20 C -0.088 4.088 21 C 0.108 3.892 22 N -0.854 5.854 23 H 0.273 0.727 24 H -0.008 1.008 25 H -0.014 1.014 26 H 0.074 0.926 27 H 0.048 0.952 28 H 0.121 0.879 29 H 0.035 0.965 30 H 0.155 0.845 31 H 0.177 0.823 32 H 0.170 0.830 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.351 0.649 36 H 0.357 0.643 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.500 -24.706 4.367 26.827 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.189 4.189 3 Si 0.806 3.194 4 H -0.190 1.190 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.592 4.592 8 H 0.073 0.927 9 C 0.134 3.866 10 O -0.332 6.332 11 C -0.019 4.019 12 C 0.011 3.989 13 O -0.262 6.262 14 C 0.011 3.989 15 C 0.017 3.983 16 F -0.135 7.135 17 C -0.162 4.162 18 C -0.105 4.105 19 C -0.119 4.119 20 C -0.089 4.089 21 C -0.022 4.022 22 N -0.387 5.387 23 H 0.081 0.919 24 H 0.010 0.990 25 H 0.004 0.996 26 H 0.092 0.908 27 H 0.066 0.934 28 H 0.138 0.862 29 H 0.053 0.947 30 H 0.173 0.827 31 H 0.194 0.806 32 H 0.188 0.812 33 H 0.089 0.911 34 H 0.081 0.919 35 H 0.165 0.835 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 9.579 -23.651 4.185 25.858 hybrid contribution -0.227 0.543 0.094 0.596 sum 9.352 -23.108 4.280 25.293 Atomic orbital electron populations 1.70054 1.07643 1.28822 1.50205 1.25950 0.96030 1.03272 0.93676 0.85239 0.78176 0.76688 0.79323 1.19004 1.19304 1.19281 1.21345 0.93896 0.91131 1.52794 0.92683 1.19849 0.88576 0.84581 0.93628 1.87905 1.35610 1.14461 1.95244 1.22615 0.95036 0.83445 1.00842 1.22975 0.92420 0.99402 0.84151 1.86065 1.45829 1.54765 1.39544 1.19014 0.86537 0.91536 1.01795 1.18842 0.95650 0.83117 1.00728 1.91478 1.94823 1.44563 1.82654 1.21446 0.98655 0.94158 1.01902 1.21466 0.98152 0.95273 0.95624 1.21470 0.91526 0.99726 0.99209 1.20291 0.98122 0.91408 0.99108 1.20540 0.88673 1.00518 0.92447 1.58537 1.06796 1.45285 1.28045 0.91861 0.99042 0.99630 0.90825 0.93351 0.86195 0.94655 0.82736 0.80591 0.81233 0.91110 0.91878 0.83531 0.82790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.91 13.29 21.45 0.28 -57.62 16 2 C 0.01 0.57 5.46 84.65 0.46 1.03 16 3 Si 0.98 46.77 29.54 68.60 2.03 48.79 16 4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 5 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16 6 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 7 C -0.55 -35.64 9.43 25.60 0.24 -35.40 16 8 H 0.05 3.57 7.81 -2.91 -0.02 3.54 16 9 C 0.21 12.72 5.69 71.23 0.41 13.13 16 10 O -0.41 -22.96 10.29 -144.35 -1.49 -24.44 16 11 C 0.06 2.42 6.32 71.98 0.45 2.88 16 12 C 0.08 3.06 6.44 71.98 0.46 3.52 16 13 O -0.34 -13.55 9.12 -88.38 -0.81 -14.36 16 14 C 0.06 1.78 5.70 22.53 0.13 1.91 16 15 C 0.04 1.14 7.31 22.45 0.16 1.30 16 16 F -0.16 -6.17 17.11 44.97 0.77 -5.40 16 17 C -0.14 -2.98 10.02 22.30 0.22 -2.76 16 18 C -0.09 -1.18 10.04 22.28 0.22 -0.96 16 19 C -0.10 -1.40 9.66 22.26 0.22 -1.18 16 20 C -0.09 -1.91 5.40 -19.78 -0.11 -2.02 16 21 C 0.11 1.95 6.57 85.56 0.56 2.51 16 22 N -0.85 -13.13 7.85 -190.00 -1.49 -14.62 16 23 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16 24 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16 25 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 26 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 27 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.12 3.51 6.29 -2.39 -0.02 3.49 16 29 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16 30 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16 31 H 0.18 0.91 8.06 -2.91 -0.02 0.89 16 32 H 0.17 0.99 8.04 -2.91 -0.02 0.97 16 33 H 0.07 0.81 8.01 -2.39 -0.02 0.79 16 34 H 0.06 1.51 7.85 -2.39 -0.02 1.49 16 35 H 0.35 4.01 8.98 -89.70 -0.81 3.21 16 36 H 0.36 4.22 9.08 -89.70 -0.81 3.40 16 Total: -1.00 -80.43 317.78 2.22 -78.21 By element: Atomic # 1 Polarization: 6.00 SS G_CDS: -0.51 Total: 5.49 kcal Atomic # 6 Polarization: -19.48 SS G_CDS: 3.44 Total: -16.04 kcal Atomic # 7 Polarization: -71.04 SS G_CDS: -1.21 Total: -72.25 kcal Atomic # 8 Polarization: -36.51 SS G_CDS: -2.29 Total: -38.80 kcal Atomic # 9 Polarization: -6.17 SS G_CDS: 0.77 Total: -5.40 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.79 kcal Total: -80.43 2.22 -78.21 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385264689.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.174 kcal (2) G-P(sol) polarization free energy of solvation -80.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.606 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.224 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -131.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds