Wall clock time and date at job start Mon Mar 30 2020 05:28:54
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 N
2 2 C 1.31518 * 1
3 3 Si 1.86805 * 119.99744 * 2 1
4 4 H 1.48500 * 109.46813 * 240.00078 * 3 2 1
5 5 H 1.48499 * 109.46905 * 359.97438 * 3 2 1
6 6 H 1.48494 * 109.47365 * 120.00148 * 3 2 1
7 7 C 1.37871 * 120.00101 * 179.97438 * 2 1 3
8 8 H 1.08004 * 119.99854 * 180.02562 * 7 2 1
9 9 C 1.50694 * 120.00358 * 359.97438 * 7 2 1
10 10 O 1.42898 * 109.47357 * 179.97438 * 9 7 2
11 11 C 1.42906 * 113.99824 * 180.02562 * 10 9 7
12 12 C 1.53006 * 109.46752 * 180.02562 * 11 10 9
13 13 O 1.42903 * 109.47256 * 65.00003 * 12 11 10
14 14 C 1.35952 * 116.99999 * 179.97438 * 13 12 11
15 15 C 1.38950 * 120.06063 * 89.99579 * 14 13 12
16 16 F 1.35098 * 120.05004 * 0.02562 * 15 14 13
17 17 C 1.38295 * 119.90103 * 179.97438 * 15 14 13
18 18 C 1.38297 * 120.02980 * 0.02657 * 17 15 14
19 19 C 1.38214 * 120.12771 * 359.97438 * 18 17 15
20 20 C 1.38227 * 120.09731 * 359.73876 * 19 18 17
21 21 C 1.50701 * 120.02012 * 180.25957 * 20 19 18
22 22 N 1.46902 * 109.46876 * 260.27992 * 21 20 19
23 23 H 0.96999 * 119.99956 * 359.97438 * 1 2 3
24 24 H 1.09008 * 109.47126 * 60.00138 * 9 7 2
25 25 H 1.09002 * 109.47402 * 300.00369 * 9 7 2
26 26 H 1.08993 * 109.47732 * 60.00254 * 11 10 9
27 27 H 1.09000 * 109.47141 * 299.99893 * 11 10 9
28 28 H 1.09004 * 109.46579 * 184.99441 * 12 11 10
29 29 H 1.08992 * 109.47046 * 304.99625 * 12 11 10
30 30 H 1.08002 * 119.98326 * 179.97438 * 17 15 14
31 31 H 1.08008 * 119.93430 * 179.97438 * 18 17 15
32 32 H 1.08007 * 119.95358 * 180.02562 * 19 18 17
33 33 H 1.08998 * 109.46707 * 20.27393 * 21 20 19
34 34 H 1.08998 * 109.47025 * 140.27450 * 21 20 19
35 35 H 1.00896 * 111.00335 * 56.04662 * 22 21 20
36 36 H 1.00896 * 110.99783 * 180.02562 * 22 21 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 7 0.0000 0.0000 0.0000
2 6 1.3152 0.0000 0.0000
3 14 2.2491 1.6178 0.0000
4 1 3.1028 1.6965 -1.2125
5 1 1.2840 2.7465 -0.0006
6 1 3.1029 1.6966 1.2124
7 6 2.0046 -1.1940 0.0005
8 1 3.0846 -1.1939 0.0010
9 6 1.2512 -2.4991 0.0017
10 8 2.1798 -3.5852 0.0015
11 6 1.5653 -4.8754 0.0019
12 6 2.6483 -5.9561 0.0023
13 8 3.3878 -5.8891 1.2233
14 6 4.3947 -6.7881 1.3852
15 6 5.6803 -6.4775 0.9593
16 9 5.9319 -5.2813 0.3841
17 6 6.7022 -7.3943 1.1262
18 6 6.4443 -8.6185 1.7155
19 6 5.1659 -8.9288 2.1396
20 6 4.1418 -8.0141 1.9808
21 6 2.7499 -8.3519 2.4491
22 7 1.9387 -8.7829 1.3027
23 1 -0.4850 0.8400 0.0004
24 1 0.6242 -2.5575 -0.8881
25 1 0.6248 -2.5563 0.8919
26 1 0.9448 -4.9827 -0.8877
27 1 0.9455 -4.9823 0.8922
28 1 2.1823 -6.9375 -0.0868
29 1 3.3218 -5.7958 -0.8396
30 1 7.7019 -7.1544 0.7953
31 1 7.2435 -9.3335 1.8447
32 1 4.9678 -9.8855 2.5999
33 1 2.7987 -9.1566 3.1827
34 1 2.2963 -7.4718 2.9049
35 1 2.3722 -9.5580 0.8240
36 1 1.0000 -9.0148 1.5908
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000385264689.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 05:28:54
Heat of formation + Delta-G solvation = -131.381989 kcal
Electronic energy + Delta-G solvation = -20283.354748 eV
Core-core repulsion = 16874.349039 eV
Total energy + Delta-G solvation = -3409.005708 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 269.121 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-49.90548 -40.96251 -38.95834 -37.93828 -35.68236 -34.97153 -32.02652 -31.33347
-30.21494 -28.86345 -26.07083 -24.59754 -23.95394 -23.17660 -22.37973 -19.10048
-18.69146 -18.22448 -17.99773 -17.42499 -17.00954 -16.59861 -16.55675 -16.38905
-15.82137 -15.69032 -15.40937 -15.11334 -14.72961 -14.28741 -14.20826 -13.69017
-13.52496 -13.25369 -13.06985 -12.86648 -12.82260 -12.69952 -12.35194 -12.15005
-11.82097 -11.35000 -10.93135 -10.84197 -10.28740 -9.87123 -9.62537 -9.52669
-8.34503 -6.47250 0.02681 0.09661 1.36885 1.42574 1.51028 2.30767
2.33191 2.79337 2.98518 3.16191 3.20708 3.64862 3.81378 3.96429
4.12315 4.20729 4.21746 4.26816 4.35423 4.49961 4.57900 4.67717
4.70089 4.82866 4.87350 5.02230 5.12163 5.14295 5.30381 5.38169
5.51443 5.73377 5.93065 6.22138 6.47612 6.55617 6.64574 6.78861
7.24476 8.77816
Molecular weight = 269.12amu
Principal moments of inertia in cm(-1)
A = 0.025551 B = 0.004205 C = 0.003734
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1095.584013 B = 6656.877557 C = 7497.679674
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 N -0.928 5.928
2 C 0.009 3.991
3 Si 0.984 3.016
4 H -0.265 1.265
5 H -0.269 1.269
6 H -0.268 1.268
7 C -0.554 4.554
8 H 0.055 0.945
9 C 0.209 3.791
10 O -0.412 6.412
11 C 0.057 3.943
12 C 0.084 3.916
13 O -0.345 6.345
14 C 0.056 3.944
15 C 0.036 3.964
16 F -0.156 7.156
17 C -0.143 4.143
18 C -0.088 4.088
19 C -0.101 4.101
20 C -0.088 4.088
21 C 0.108 3.892
22 N -0.854 5.854
23 H 0.273 0.727
24 H -0.008 1.008
25 H -0.014 1.014
26 H 0.074 0.926
27 H 0.048 0.952
28 H 0.121 0.879
29 H 0.035 0.965
30 H 0.155 0.845
31 H 0.177 0.823
32 H 0.170 0.830
33 H 0.071 0.929
34 H 0.063 0.937
35 H 0.351 0.649
36 H 0.357 0.643
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.500 -24.706 4.367 26.827
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 N -0.567 5.567
2 C -0.189 4.189
3 Si 0.806 3.194
4 H -0.190 1.190
5 H -0.193 1.193
6 H -0.193 1.193
7 C -0.592 4.592
8 H 0.073 0.927
9 C 0.134 3.866
10 O -0.332 6.332
11 C -0.019 4.019
12 C 0.011 3.989
13 O -0.262 6.262
14 C 0.011 3.989
15 C 0.017 3.983
16 F -0.135 7.135
17 C -0.162 4.162
18 C -0.105 4.105
19 C -0.119 4.119
20 C -0.089 4.089
21 C -0.022 4.022
22 N -0.387 5.387
23 H 0.081 0.919
24 H 0.010 0.990
25 H 0.004 0.996
26 H 0.092 0.908
27 H 0.066 0.934
28 H 0.138 0.862
29 H 0.053 0.947
30 H 0.173 0.827
31 H 0.194 0.806
32 H 0.188 0.812
33 H 0.089 0.911
34 H 0.081 0.919
35 H 0.165 0.835
36 H 0.172 0.828
Dipole moment (debyes) X Y Z Total
from point charges 9.579 -23.651 4.185 25.858
hybrid contribution -0.227 0.543 0.094 0.596
sum 9.352 -23.108 4.280 25.293
Atomic orbital electron populations
1.70054 1.07643 1.28822 1.50205 1.25950 0.96030 1.03272 0.93676
0.85239 0.78176 0.76688 0.79323 1.19004 1.19304 1.19281 1.21345
0.93896 0.91131 1.52794 0.92683 1.19849 0.88576 0.84581 0.93628
1.87905 1.35610 1.14461 1.95244 1.22615 0.95036 0.83445 1.00842
1.22975 0.92420 0.99402 0.84151 1.86065 1.45829 1.54765 1.39544
1.19014 0.86537 0.91536 1.01795 1.18842 0.95650 0.83117 1.00728
1.91478 1.94823 1.44563 1.82654 1.21446 0.98655 0.94158 1.01902
1.21466 0.98152 0.95273 0.95624 1.21470 0.91526 0.99726 0.99209
1.20291 0.98122 0.91408 0.99108 1.20540 0.88673 1.00518 0.92447
1.58537 1.06796 1.45285 1.28045 0.91861 0.99042 0.99630 0.90825
0.93351 0.86195 0.94655 0.82736 0.80591 0.81233 0.91110 0.91878
0.83531 0.82790
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 N -0.93 -57.91 13.29 21.45 0.28 -57.62 16
2 C 0.01 0.57 5.46 84.65 0.46 1.03 16
3 Si 0.98 46.77 29.54 68.60 2.03 48.79 16
4 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16
5 H -0.27 -11.92 7.11 99.48 0.71 -11.22 16
6 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16
7 C -0.55 -35.64 9.43 25.60 0.24 -35.40 16
8 H 0.05 3.57 7.81 -2.91 -0.02 3.54 16
9 C 0.21 12.72 5.69 71.23 0.41 13.13 16
10 O -0.41 -22.96 10.29 -144.35 -1.49 -24.44 16
11 C 0.06 2.42 6.32 71.98 0.45 2.88 16
12 C 0.08 3.06 6.44 71.98 0.46 3.52 16
13 O -0.34 -13.55 9.12 -88.38 -0.81 -14.36 16
14 C 0.06 1.78 5.70 22.53 0.13 1.91 16
15 C 0.04 1.14 7.31 22.45 0.16 1.30 16
16 F -0.16 -6.17 17.11 44.97 0.77 -5.40 16
17 C -0.14 -2.98 10.02 22.30 0.22 -2.76 16
18 C -0.09 -1.18 10.04 22.28 0.22 -0.96 16
19 C -0.10 -1.40 9.66 22.26 0.22 -1.18 16
20 C -0.09 -1.91 5.40 -19.78 -0.11 -2.02 16
21 C 0.11 1.95 6.57 85.56 0.56 2.51 16
22 N -0.85 -13.13 7.85 -190.00 -1.49 -14.62 16
23 H 0.27 15.66 8.31 -92.71 -0.77 14.89 16
24 H -0.01 -0.50 8.14 -2.38 -0.02 -0.52 16
25 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16
26 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16
27 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16
28 H 0.12 3.51 6.29 -2.39 -0.02 3.49 16
29 H 0.04 1.35 8.14 -2.39 -0.02 1.33 16
30 H 0.15 2.56 8.06 -2.91 -0.02 2.53 16
31 H 0.18 0.91 8.06 -2.91 -0.02 0.89 16
32 H 0.17 0.99 8.04 -2.91 -0.02 0.97 16
33 H 0.07 0.81 8.01 -2.39 -0.02 0.79 16
34 H 0.06 1.51 7.85 -2.39 -0.02 1.49 16
35 H 0.35 4.01 8.98 -89.70 -0.81 3.21 16
36 H 0.36 4.22 9.08 -89.70 -0.81 3.40 16
Total: -1.00 -80.43 317.78 2.22 -78.21
By element:
Atomic # 1 Polarization: 6.00 SS G_CDS: -0.51 Total: 5.49 kcal
Atomic # 6 Polarization: -19.48 SS G_CDS: 3.44 Total: -16.04 kcal
Atomic # 7 Polarization: -71.04 SS G_CDS: -1.21 Total: -72.25 kcal
Atomic # 8 Polarization: -36.51 SS G_CDS: -2.29 Total: -38.80 kcal
Atomic # 9 Polarization: -6.17 SS G_CDS: 0.77 Total: -5.40 kcal
Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.79 kcal
Total: -80.43 2.22 -78.21 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000385264689.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -53.174 kcal
(2) G-P(sol) polarization free energy of solvation -80.432 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.606 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.224 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.208 kcal
(6) G-S(sol) free energy of system = (1) + (5) -131.382 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds