Wall clock time and date at job start Mon Mar 30 2020 05:28:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99332 * 2 1 4 4 H 1.48503 * 109.46973 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47148 * 300.00013 * 3 2 1 6 6 H 1.48497 * 109.47029 * 60.00398 * 3 2 1 7 7 C 1.37868 * 120.00542 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99977 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00134 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.47372 * 179.97438 * 9 7 2 11 11 C 1.42895 * 113.99948 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47036 * 179.97438 * 11 10 9 13 13 O 1.42897 * 109.46881 * 65.00230 * 12 11 10 14 14 C 1.35894 * 117.00234 * 180.02562 * 13 12 11 15 15 C 1.38713 * 120.03899 * 359.97438 * 14 13 12 16 16 C 1.38345 * 119.91821 * 179.97438 * 15 14 13 17 17 F 1.35103 * 119.99420 * 180.02562 * 16 15 14 18 18 C 1.38515 * 120.00955 * 0.03334 * 16 15 14 19 19 C 1.38211 * 120.08231 * 359.97438 * 18 16 15 20 20 C 1.50697 * 119.96242 * 179.97438 * 19 18 16 21 21 N 1.46900 * 109.46843 * 90.00269 * 20 19 18 22 22 C 1.38180 * 120.08013 * 359.71026 * 19 18 16 23 23 H 0.96998 * 120.00821 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.46887 * 59.99374 * 9 7 2 25 25 H 1.09003 * 109.46932 * 299.99824 * 9 7 2 26 26 H 1.09001 * 109.46798 * 60.00190 * 11 10 9 27 27 H 1.08993 * 109.47318 * 299.99656 * 11 10 9 28 28 H 1.08992 * 109.47046 * 185.00128 * 12 11 10 29 29 H 1.08997 * 109.47395 * 305.00669 * 12 11 10 30 30 H 1.07991 * 120.04407 * 359.96618 * 15 14 13 31 31 H 1.07995 * 119.96381 * 179.97438 * 18 16 15 32 32 H 1.08998 * 109.47660 * 210.00365 * 20 19 18 33 33 H 1.09000 * 109.47308 * 330.00608 * 20 19 18 34 34 H 1.00896 * 111.00436 * 56.05117 * 21 20 19 35 35 H 1.00905 * 111.00074 * 180.02562 * 21 20 19 36 36 H 1.08002 * 120.00365 * 180.27650 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3467 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1938 0.0001 9 6 1.2512 -2.4991 0.0005 10 8 2.1799 -3.5852 0.0005 11 6 1.5655 -4.8753 0.0011 12 6 2.6486 -5.9560 0.0004 13 8 3.3888 -5.8893 1.2209 14 6 4.3961 -6.7872 1.3815 15 6 4.6659 -7.7137 0.3850 16 6 5.6923 -8.6263 0.5509 17 9 5.9568 -9.5290 -0.4190 18 6 6.4487 -8.6148 1.7112 19 6 6.1800 -7.6920 2.7043 20 6 7.0042 -7.6823 3.9658 21 7 8.1582 -6.7905 3.7898 22 6 5.1598 -6.7746 2.5396 23 1 -0.4851 0.8400 0.0004 24 1 0.6249 -2.5570 -0.8896 25 1 0.6243 -2.5567 0.8903 26 1 0.9451 -4.9826 -0.8887 27 1 0.9457 -4.9822 0.8913 28 1 2.1826 -6.9373 -0.0887 29 1 3.3216 -5.7955 -0.8418 30 1 4.0754 -7.7226 -0.5192 31 1 7.2495 -9.3279 1.8401 32 1 6.3939 -7.3271 4.7960 33 1 7.3547 -8.6923 4.1786 34 1 7.8614 -5.8624 3.5281 35 1 8.7275 -6.7671 4.6226 36 1 4.9538 -6.0511 3.3145 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385277176.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:58 Heat of formation + Delta-G solvation = -112.622512 kcal Electronic energy + Delta-G solvation = -19510.274074 eV Core-core repulsion = 16102.081838 eV Total energy + Delta-G solvation = -3408.192236 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -49.02485 -40.20525 -38.02555 -36.56276 -34.64475 -32.79973 -30.90035 -30.50279 -29.18329 -26.95846 -25.47258 -22.88092 -22.70472 -22.30325 -20.95041 -18.30140 -17.07476 -16.46032 -16.34064 -16.28613 -16.16396 -15.91422 -15.65818 -14.98667 -14.76501 -14.55948 -14.32119 -14.11346 -13.66796 -13.41657 -12.70578 -12.41778 -12.24989 -12.03519 -11.69578 -11.56067 -11.27023 -11.01991 -10.86977 -10.74503 -10.57277 -10.07148 -9.15229 -9.13770 -8.90908 -8.89049 -8.30626 -8.24036 -6.13914 -4.15632 0.95330 1.18730 3.14985 3.27855 3.34349 3.40666 3.41181 4.03920 4.30086 4.38211 4.51244 4.66510 4.80663 4.86375 4.94659 5.09633 5.15761 5.22853 5.24030 5.33945 5.36228 5.75598 5.82683 5.90616 5.93954 6.03618 6.11117 6.25171 6.58358 6.75359 7.02351 7.10589 7.36279 7.38333 7.76564 8.10189 8.49666 8.97357 9.49402 10.97714 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.021189 B = 0.003502 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.126771 B = 7992.420374 C = 8838.214557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.515 4.515 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.390 6.390 11 C 0.063 3.937 12 C 0.062 3.938 13 O -0.292 6.292 14 C 0.171 3.829 15 C -0.250 4.250 16 C 0.137 3.863 17 F -0.139 7.139 18 C -0.178 4.178 19 C -0.022 4.022 20 C 0.102 3.898 21 N -0.847 5.847 22 C -0.159 4.159 23 H 0.264 0.736 24 H 0.006 0.994 25 H 0.007 0.993 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.141 0.859 31 H 0.135 0.865 32 H 0.043 0.957 33 H 0.084 0.916 34 H 0.347 0.653 35 H 0.345 0.655 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.471 -17.847 5.665 21.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.145 4.145 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.553 4.553 8 H 0.086 0.914 9 C 0.120 3.880 10 O -0.310 6.310 11 C -0.015 4.015 12 C -0.013 4.013 13 O -0.204 6.204 14 C 0.124 3.876 15 C -0.270 4.270 16 C 0.118 3.882 17 F -0.117 7.117 18 C -0.198 4.198 19 C -0.022 4.022 20 C -0.028 4.028 21 N -0.377 5.377 22 C -0.179 4.179 23 H 0.073 0.927 24 H 0.024 0.976 25 H 0.025 0.975 26 H 0.080 0.920 27 H 0.068 0.932 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.158 0.842 31 H 0.152 0.848 32 H 0.061 0.939 33 H 0.102 0.898 34 H 0.160 0.840 35 H 0.158 0.842 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 10.663 -18.064 5.179 21.606 hybrid contribution -0.471 1.118 0.254 1.239 sum 10.192 -16.947 5.433 20.508 Atomic orbital electron populations 1.69965 1.06117 1.27124 1.50615 1.24948 0.94982 0.99471 0.95083 0.86275 0.80059 0.82501 0.77648 1.19434 1.20805 1.20798 1.21089 0.94161 0.89272 1.50761 0.91434 1.20246 0.88743 0.83521 0.95498 1.87924 1.35286 1.12570 1.95217 1.22279 0.93154 0.85485 1.00584 1.23053 0.94030 0.98754 0.85447 1.86274 1.42600 1.51598 1.39918 1.18737 0.88122 0.87738 0.92990 1.21214 1.03157 1.00262 1.02346 1.17331 0.95778 0.88701 0.86386 1.91497 1.93269 1.65306 1.61665 1.20784 1.02366 1.03229 0.93389 1.19299 0.94071 0.93490 0.95373 1.20688 0.90744 0.98636 0.92704 1.58688 1.21750 1.15728 1.41581 1.20386 0.97501 1.02128 0.97859 0.92666 0.97608 0.97497 0.91988 0.93170 0.91065 0.91007 0.84158 0.84752 0.93889 0.89790 0.83952 0.84234 0.84610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.81 13.29 55.43 0.74 -26.07 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.91 21.83 29.54 -169.99 -5.02 16.81 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.51 -15.22 9.43 -34.44 -0.32 -15.55 16 8 H 0.07 2.00 7.81 -52.49 -0.41 1.59 16 9 C 0.19 5.31 5.69 36.01 0.20 5.51 16 10 O -0.39 -9.44 10.29 -40.09 -0.41 -9.86 16 11 C 0.06 1.12 6.32 37.16 0.23 1.36 16 12 C 0.06 0.91 5.12 37.16 0.19 1.10 16 13 O -0.29 -4.80 10.10 -24.26 -0.25 -5.05 16 14 C 0.17 2.42 6.69 -39.22 -0.26 2.16 16 15 C -0.25 -3.23 9.02 -39.37 -0.35 -3.58 16 16 C 0.14 1.71 7.30 -39.44 -0.29 1.42 16 17 F -0.14 -1.75 17.27 2.25 0.04 -1.71 16 18 C -0.18 -1.99 9.68 -39.49 -0.38 -2.37 16 19 C -0.02 -0.23 5.39 -104.65 -0.56 -0.80 16 20 C 0.10 0.83 6.91 -4.98 -0.03 0.80 16 21 N -0.85 -6.82 9.61 -11.41 -0.11 -6.93 16 22 C -0.16 -1.99 9.64 -39.42 -0.38 -2.37 16 23 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 24 H 0.01 0.17 8.14 -51.93 -0.42 -0.25 16 25 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 26 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 27 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.07 0.80 7.66 -51.93 -0.40 0.40 16 29 H 0.07 1.03 7.66 -51.93 -0.40 0.63 16 30 H 0.14 1.62 6.30 -52.49 -0.33 1.29 16 31 H 0.13 1.28 8.06 -52.49 -0.42 0.86 16 32 H 0.04 0.31 8.09 -51.93 -0.42 -0.11 16 33 H 0.08 0.59 8.08 -51.93 -0.42 0.17 16 34 H 0.35 2.87 8.99 -39.29 -0.35 2.51 16 35 H 0.34 2.00 9.08 -39.29 -0.36 1.64 16 36 H 0.14 1.59 8.06 -52.49 -0.42 1.16 16 LS Contribution 318.71 15.07 4.80 4.80 Total: -1.00 -32.53 318.71 -7.02 -39.56 By element: Atomic # 1 Polarization: 3.99 SS G_CDS: -4.76 Total: -0.77 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -2.06 Total: -10.78 kcal Atomic # 7 Polarization: -33.63 SS G_CDS: 0.63 Total: -33.01 kcal Atomic # 8 Polarization: -14.25 SS G_CDS: -0.66 Total: -14.90 kcal Atomic # 9 Polarization: -1.75 SS G_CDS: 0.04 Total: -1.71 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -32.53 -7.02 -39.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385277176.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.063 kcal (2) G-P(sol) polarization free energy of solvation -32.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.025 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds