Wall clock time and date at job start Mon Mar 30 2020 05:28:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99332 * 2 1 4 4 H 1.48503 * 109.46973 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47148 * 300.00013 * 3 2 1 6 6 H 1.48497 * 109.47029 * 60.00398 * 3 2 1 7 7 C 1.37868 * 120.00542 * 179.97438 * 2 1 3 8 8 H 1.08001 * 119.99977 * 179.97438 * 7 2 1 9 9 C 1.50701 * 120.00134 * 0.02562 * 7 2 1 10 10 O 1.42901 * 109.47372 * 179.97438 * 9 7 2 11 11 C 1.42895 * 113.99948 * 179.97438 * 10 9 7 12 12 C 1.53006 * 109.47036 * 179.97438 * 11 10 9 13 13 O 1.42897 * 109.46881 * 65.00230 * 12 11 10 14 14 C 1.35894 * 117.00234 * 180.02562 * 13 12 11 15 15 C 1.38713 * 120.03899 * 359.97438 * 14 13 12 16 16 C 1.38345 * 119.91821 * 179.97438 * 15 14 13 17 17 F 1.35103 * 119.99420 * 180.02562 * 16 15 14 18 18 C 1.38515 * 120.00955 * 0.03334 * 16 15 14 19 19 C 1.38211 * 120.08231 * 359.97438 * 18 16 15 20 20 C 1.50697 * 119.96242 * 179.97438 * 19 18 16 21 21 N 1.46900 * 109.46843 * 90.00269 * 20 19 18 22 22 C 1.38180 * 120.08013 * 359.71026 * 19 18 16 23 23 H 0.96998 * 120.00821 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.46887 * 59.99374 * 9 7 2 25 25 H 1.09003 * 109.46932 * 299.99824 * 9 7 2 26 26 H 1.09001 * 109.46798 * 60.00190 * 11 10 9 27 27 H 1.08993 * 109.47318 * 299.99656 * 11 10 9 28 28 H 1.08992 * 109.47046 * 185.00128 * 12 11 10 29 29 H 1.08997 * 109.47395 * 305.00669 * 12 11 10 30 30 H 1.07991 * 120.04407 * 359.96618 * 15 14 13 31 31 H 1.07995 * 119.96381 * 179.97438 * 18 16 15 32 32 H 1.08998 * 109.47660 * 210.00365 * 20 19 18 33 33 H 1.09000 * 109.47308 * 330.00608 * 20 19 18 34 34 H 1.00896 * 111.00436 * 56.05117 * 21 20 19 35 35 H 1.00905 * 111.00074 * 180.02562 * 21 20 19 36 36 H 1.08002 * 120.00365 * 180.27650 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3467 0.0006 5 1 1.8902 2.3965 -1.2125 6 1 1.8902 2.3965 1.2125 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1938 0.0001 9 6 1.2512 -2.4991 0.0005 10 8 2.1799 -3.5852 0.0005 11 6 1.5655 -4.8753 0.0011 12 6 2.6486 -5.9560 0.0004 13 8 3.3888 -5.8893 1.2209 14 6 4.3961 -6.7872 1.3815 15 6 4.6659 -7.7137 0.3850 16 6 5.6923 -8.6263 0.5509 17 9 5.9568 -9.5290 -0.4190 18 6 6.4487 -8.6148 1.7112 19 6 6.1800 -7.6920 2.7043 20 6 7.0042 -7.6823 3.9658 21 7 8.1582 -6.7905 3.7898 22 6 5.1598 -6.7746 2.5396 23 1 -0.4851 0.8400 0.0004 24 1 0.6249 -2.5570 -0.8896 25 1 0.6243 -2.5567 0.8903 26 1 0.9451 -4.9826 -0.8887 27 1 0.9457 -4.9822 0.8913 28 1 2.1826 -6.9373 -0.0887 29 1 3.3216 -5.7955 -0.8418 30 1 4.0754 -7.7226 -0.5192 31 1 7.2495 -9.3279 1.8401 32 1 6.3939 -7.3271 4.7960 33 1 7.3547 -8.6923 4.1786 34 1 7.8614 -5.8624 3.5281 35 1 8.7275 -6.7671 4.6226 36 1 4.9538 -6.0511 3.3145 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385277176.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:28:57 Heat of formation + Delta-G solvation = -135.378800 kcal Electronic energy + Delta-G solvation = -19511.260861 eV Core-core repulsion = 16102.081838 eV Total energy + Delta-G solvation = -3409.179023 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -49.98970 -41.23995 -39.16831 -38.22906 -35.41376 -34.95462 -32.14681 -31.38559 -30.43152 -28.96724 -26.29866 -24.60984 -23.95154 -23.66980 -21.95007 -19.30294 -18.71975 -17.96298 -17.78842 -17.25270 -17.19890 -16.87676 -16.70405 -16.47689 -16.18781 -15.93096 -15.54566 -15.43687 -14.85356 -14.45838 -14.04518 -13.76087 -13.40313 -13.21815 -13.08551 -12.84980 -12.75302 -12.71874 -12.34713 -12.23955 -11.94142 -11.83179 -11.29034 -10.92047 -10.29411 -9.97712 -9.59745 -9.31135 -8.34295 -6.46695 0.02133 0.22525 1.39495 1.40716 1.55572 2.07493 2.33431 2.46913 2.99667 3.05626 3.11399 3.56556 3.85816 3.88365 3.91786 4.00087 4.07810 4.15406 4.27593 4.39619 4.46650 4.50315 4.63703 4.73197 4.82999 4.97638 5.00261 5.13369 5.14941 5.37525 5.52591 5.65505 5.93079 6.15696 6.30918 6.49121 6.57386 6.77869 7.25289 8.78194 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.021189 B = 0.003502 C = 0.003167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1321.126771 B = 7992.420374 C = 8838.214557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.008 3.992 3 Si 0.983 3.017 4 H -0.266 1.266 5 H -0.270 1.270 6 H -0.270 1.270 7 C -0.551 4.551 8 H 0.059 0.941 9 C 0.208 3.792 10 O -0.410 6.410 11 C 0.051 3.949 12 C 0.067 3.933 13 O -0.321 6.321 14 C 0.148 3.852 15 C -0.254 4.254 16 C 0.127 3.873 17 F -0.141 7.141 18 C -0.173 4.173 19 C -0.016 4.016 20 C 0.104 3.896 21 N -0.855 5.855 22 C -0.167 4.167 23 H 0.272 0.728 24 H -0.007 1.007 25 H -0.013 1.013 26 H 0.082 0.918 27 H 0.051 0.949 28 H 0.111 0.889 29 H 0.073 0.927 30 H 0.150 0.850 31 H 0.154 0.846 32 H 0.054 0.946 33 H 0.100 0.900 34 H 0.345 0.655 35 H 0.358 0.642 36 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.787 -18.209 6.068 22.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.191 4.191 3 Si 0.805 3.195 4 H -0.190 1.190 5 H -0.195 1.195 6 H -0.196 1.196 7 C -0.588 4.588 8 H 0.077 0.923 9 C 0.133 3.867 10 O -0.330 6.330 11 C -0.026 4.026 12 C -0.007 4.007 13 O -0.235 6.235 14 C 0.102 3.898 15 C -0.273 4.273 16 C 0.107 3.893 17 F -0.119 7.119 18 C -0.193 4.193 19 C -0.017 4.017 20 C -0.026 4.026 21 N -0.387 5.387 22 C -0.186 4.186 23 H 0.081 0.919 24 H 0.011 0.989 25 H 0.005 0.995 26 H 0.100 0.900 27 H 0.069 0.931 28 H 0.128 0.872 29 H 0.092 0.908 30 H 0.168 0.832 31 H 0.172 0.828 32 H 0.072 0.928 33 H 0.119 0.881 34 H 0.157 0.843 35 H 0.173 0.827 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 11.985 -18.459 5.590 22.708 hybrid contribution -0.868 1.108 0.159 1.417 sum 11.117 -17.351 5.749 21.394 Atomic orbital electron populations 1.70059 1.07688 1.28678 1.50432 1.25939 0.95974 1.03323 0.93815 0.85143 0.78601 0.77313 0.78395 1.18996 1.19465 1.19551 1.21416 0.94063 0.90974 1.52397 0.92263 1.19867 0.88561 0.84468 0.93806 1.87867 1.35525 1.14283 1.95308 1.22661 0.94802 0.83479 1.01614 1.23057 0.93388 0.99114 0.85188 1.86209 1.43714 1.52980 1.40564 1.18933 0.88441 0.88242 0.94151 1.21301 1.03512 1.00082 1.02438 1.17470 0.96108 0.88815 0.86882 1.91491 1.93283 1.65329 1.61837 1.21072 1.02214 1.03240 0.92736 1.19578 0.93476 0.92397 0.96226 1.20749 0.90685 0.99682 0.91509 1.58689 1.21849 1.15578 1.42578 1.20594 0.97812 1.02648 0.97564 0.91947 0.98935 0.99477 0.89965 0.93075 0.87156 0.90840 0.83230 0.82834 0.92826 0.88149 0.84256 0.82746 0.84430 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.76 13.29 21.44 0.28 -55.48 16 2 C 0.01 0.47 5.46 84.65 0.46 0.93 16 3 Si 0.98 44.52 29.54 68.60 2.03 46.55 16 4 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 5 H -0.27 -11.62 7.11 99.48 0.71 -10.92 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 7 C -0.55 -33.26 9.43 25.60 0.24 -33.01 16 8 H 0.06 3.58 7.81 -2.91 -0.02 3.55 16 9 C 0.21 11.75 5.69 71.24 0.41 12.16 16 10 O -0.41 -20.33 10.29 -144.34 -1.49 -21.82 16 11 C 0.05 1.84 6.32 71.98 0.45 2.30 16 12 C 0.07 1.93 5.12 71.98 0.37 2.29 16 13 O -0.32 -10.62 10.10 -87.71 -0.89 -11.50 16 14 C 0.15 4.15 6.69 22.50 0.15 4.30 16 15 C -0.25 -6.33 9.02 22.41 0.20 -6.13 16 16 C 0.13 2.98 7.30 22.36 0.16 3.14 16 17 F -0.14 -3.36 17.27 44.97 0.78 -2.58 16 18 C -0.17 -3.54 9.68 22.33 0.22 -3.32 16 19 C -0.02 -0.32 5.39 -19.89 -0.11 -0.42 16 20 C 0.10 1.45 6.91 85.56 0.59 2.04 16 21 N -0.86 -12.11 9.61 -190.01 -1.83 -13.93 16 22 C -0.17 -4.06 9.64 22.37 0.22 -3.84 16 23 H 0.27 15.01 8.31 -92.71 -0.77 14.24 16 24 H -0.01 -0.41 8.14 -2.39 -0.02 -0.43 16 25 H -0.01 -0.74 8.14 -2.39 -0.02 -0.76 16 26 H 0.08 2.60 8.14 -2.39 -0.02 2.59 16 27 H 0.05 1.82 8.14 -2.39 -0.02 1.80 16 28 H 0.11 2.29 7.66 -2.39 -0.02 2.27 16 29 H 0.07 2.07 7.66 -2.39 -0.02 2.05 16 30 H 0.15 3.30 6.30 -2.92 -0.02 3.28 16 31 H 0.15 2.51 8.06 -2.91 -0.02 2.48 16 32 H 0.05 0.65 8.09 -2.39 -0.02 0.63 16 33 H 0.10 1.10 8.08 -2.39 -0.02 1.08 16 34 H 0.34 5.23 8.99 -89.70 -0.81 4.43 16 35 H 0.36 3.40 9.08 -89.69 -0.81 2.59 16 36 H 0.14 3.20 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -70.06 318.71 1.74 -68.32 By element: Atomic # 1 Polarization: 10.52 SS G_CDS: -0.51 Total: 10.01 kcal Atomic # 6 Polarization: -22.93 SS G_CDS: 3.36 Total: -19.56 kcal Atomic # 7 Polarization: -67.87 SS G_CDS: -1.54 Total: -69.41 kcal Atomic # 8 Polarization: -30.95 SS G_CDS: -2.37 Total: -33.32 kcal Atomic # 9 Polarization: -3.36 SS G_CDS: 0.78 Total: -2.58 kcal Atomic # 14 Polarization: 44.52 SS G_CDS: 2.03 Total: 46.55 kcal Total: -70.06 1.74 -68.32 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385277176.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.058 kcal (2) G-P(sol) polarization free energy of solvation -70.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.122 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds