Wall clock time and date at job start Mon Mar 30 2020 05:39:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00129 * 2 1 4 4 H 1.48501 * 109.47172 * 270.00114 * 3 2 1 5 5 H 1.48493 * 109.47236 * 30.00502 * 3 2 1 6 6 H 1.48502 * 109.46738 * 150.00131 * 3 2 1 7 7 C 1.37884 * 119.99489 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00089 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99416 * 179.97438 * 7 2 1 10 10 O 1.42908 * 109.46758 * 179.97438 * 9 7 2 11 11 C 1.42899 * 114.00004 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47007 * 180.02562 * 11 10 9 13 13 O 1.45196 * 109.47070 * 65.00337 * 12 11 10 14 14 C 1.34234 * 116.99938 * 179.97438 * 13 12 11 15 15 O 1.20822 * 119.99973 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00068 * 179.97438 * 14 13 12 17 17 N 1.46497 * 109.47128 * 180.02562 * 16 14 13 18 18 C 1.35963 * 126.07094 * 125.00118 * 17 16 14 19 19 C 1.35705 * 107.55016 * 179.97438 * 18 17 16 20 20 N 1.40802 * 126.06892 * 179.97438 * 19 18 17 21 21 C 1.40217 * 107.86798 * 0.02562 * 19 18 17 22 22 N 1.30868 * 108.35810 * 359.71614 * 21 19 18 23 23 H 0.96998 * 119.99982 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47500 * 60.00209 * 9 7 2 25 25 H 1.09001 * 109.47294 * 299.99344 * 9 7 2 26 26 H 1.09001 * 109.46782 * 59.99770 * 11 10 9 27 27 H 1.09002 * 109.46914 * 300.00219 * 11 10 9 28 28 H 1.08996 * 109.47090 * 304.99969 * 12 11 10 29 29 H 1.08999 * 109.47084 * 185.00141 * 12 11 10 30 30 H 1.09004 * 109.46932 * 300.00373 * 16 14 13 31 31 H 1.08997 * 109.47392 * 59.99712 * 16 14 13 32 32 H 1.08004 * 126.22597 * 359.96280 * 18 17 16 33 33 H 0.97010 * 119.99619 * 0.02562 * 20 19 18 34 34 H 0.96991 * 120.00553 * 180.02562 * 20 19 18 35 35 H 1.07999 * 125.82135 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 8 3.9878 -2.5415 -0.0010 11 6 5.4123 -2.6544 -0.0021 12 6 5.8067 -4.1327 -0.0025 13 8 5.3716 -4.7493 -1.2429 14 6 5.6432 -6.0542 -1.4029 15 8 6.2248 -6.6610 -0.5349 16 6 5.2216 -6.7624 -2.6645 17 7 5.6302 -8.1676 -2.5955 18 6 4.8165 -9.2463 -2.7466 19 6 5.5822 -10.3585 -2.6125 20 7 5.1324 -11.6900 -2.6983 21 6 6.9008 -9.9467 -2.3720 22 7 6.9296 -8.6383 -2.3677 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6806 0.8888 25 1 3.8745 -0.6802 -0.8912 26 1 5.8158 -2.1705 0.8874 27 1 5.8144 -2.1712 -0.8926 28 1 5.3315 -4.6357 0.8396 29 1 6.8896 -4.2198 0.0862 30 1 4.1382 -6.7041 -2.7692 31 1 5.6956 -6.2876 -3.5235 32 1 3.7539 -9.2223 -2.9384 33 1 4.1955 -11.8754 -2.8684 34 1 5.7592 -12.4218 -2.5875 35 1 7.7488 -10.5980 -2.2207 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385829488.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:18 Heat of formation + Delta-G solvation = -39.409451 kcal Electronic energy + Delta-G solvation = -19469.116023 eV Core-core repulsion = 16084.018505 eV Total energy + Delta-G solvation = -3385.097518 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.29491 -40.20520 -37.28509 -36.19068 -34.73113 -32.87787 -32.70057 -30.50499 -29.21668 -27.69728 -26.84483 -23.03288 -21.96087 -21.76526 -20.99037 -20.59148 -17.87510 -17.57420 -16.99428 -16.76702 -16.21028 -16.19270 -15.65797 -15.12552 -14.82964 -14.72229 -14.42629 -14.09569 -13.47297 -13.33787 -12.77401 -12.60534 -12.46059 -12.39863 -11.76039 -11.21094 -11.05305 -10.90355 -10.82487 -10.70835 -10.53275 -10.45647 -9.90598 -9.50573 -9.24492 -8.94627 -8.54465 -7.40199 -6.15506 -4.15010 1.65173 2.11319 2.15672 2.78958 2.85329 3.21788 3.29004 3.29637 3.87244 4.31593 4.41548 4.48478 4.60739 4.73584 4.86589 4.93851 5.11697 5.15672 5.34093 5.40756 5.59655 5.66036 5.74709 5.91055 6.26647 6.46519 6.52131 6.73585 6.93090 7.40238 7.50602 7.53694 7.72940 7.79618 7.91654 8.59540 8.95423 9.43167 10.97475 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.037634 B = 0.002957 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.836945 B = 9466.251877 C = 9975.467453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.072 3.928 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.520 4.520 8 H 0.083 0.917 9 C 0.168 3.832 10 O -0.376 6.376 11 C 0.058 3.942 12 C 0.077 3.923 13 O -0.341 6.341 14 C 0.445 3.555 15 O -0.488 6.488 16 C 0.154 3.846 17 N -0.367 5.367 18 C -0.028 4.028 19 C 0.061 3.939 20 N -0.877 5.877 21 C 0.007 3.993 22 N -0.248 5.248 23 H 0.267 0.733 24 H 0.004 0.996 25 H 0.001 0.999 26 H 0.065 0.935 27 H 0.052 0.948 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.140 0.860 31 H 0.126 0.874 32 H 0.172 0.828 33 H 0.395 0.605 34 H 0.397 0.603 35 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.569 -17.996 -6.958 23.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.130 4.130 3 Si 0.703 3.297 4 H -0.199 1.199 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.558 4.558 8 H 0.101 0.899 9 C 0.093 3.907 10 O -0.295 6.295 11 C -0.020 4.020 12 C 0.003 3.997 13 O -0.256 6.256 14 C 0.285 3.715 15 O -0.374 6.374 16 C 0.030 3.970 17 N -0.156 5.156 18 C -0.174 4.174 19 C -0.048 4.048 20 N -0.424 5.424 21 C -0.183 4.183 22 N -0.070 5.070 23 H 0.077 0.923 24 H 0.022 0.978 25 H 0.019 0.981 26 H 0.083 0.917 27 H 0.071 0.929 28 H 0.097 0.903 29 H 0.098 0.902 30 H 0.158 0.842 31 H 0.144 0.856 32 H 0.190 0.810 33 H 0.223 0.777 34 H 0.224 0.776 35 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges 13.165 -16.907 -6.527 22.400 hybrid contribution -0.094 0.112 0.099 0.177 sum 13.071 -16.795 -6.427 22.231 Atomic orbital electron populations 1.69873 1.06068 1.27157 1.50186 1.24774 0.94824 0.98782 0.94596 0.86839 0.80319 0.83706 0.78809 1.19865 1.20745 1.19113 1.20873 0.88179 0.95364 1.51400 0.89934 1.20640 0.96323 0.79219 0.94507 1.87972 1.16656 1.29809 1.95100 1.22408 0.86121 0.92745 1.00736 1.23195 0.99239 0.93068 0.84154 1.86559 1.73630 1.23573 1.41886 1.23545 0.77246 0.81676 0.89033 1.90724 1.37227 1.66843 1.42601 1.20902 1.03580 0.77277 0.95212 1.47565 1.05525 1.04243 1.58286 1.21675 0.97398 0.85527 1.12827 1.17675 0.92655 0.86182 1.08258 1.41480 1.11570 1.02016 1.87309 1.23595 0.96683 0.92516 1.05472 1.77316 0.99097 1.11055 1.19504 0.92305 0.97825 0.98117 0.91704 0.92936 0.90311 0.90166 0.84183 0.85616 0.81032 0.77738 0.77578 0.80252 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.35 13.96 55.43 0.77 -26.57 16 2 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 3 Si 0.88 21.07 27.47 -169.99 -4.67 16.40 16 4 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 7 C -0.52 -15.33 9.99 -34.44 -0.34 -15.67 16 8 H 0.08 2.66 8.06 -52.49 -0.42 2.24 16 9 C 0.17 4.20 4.76 36.01 0.17 4.37 16 10 O -0.38 -8.63 10.30 -38.80 -0.40 -9.03 16 11 C 0.06 0.97 6.33 37.16 0.24 1.21 16 12 C 0.08 1.17 5.84 37.16 0.22 1.39 16 13 O -0.34 -5.32 10.19 -42.04 -0.43 -5.75 16 14 C 0.44 6.42 7.99 36.01 0.29 6.71 16 15 O -0.49 -8.52 15.47 -18.75 -0.29 -8.81 16 16 C 0.15 1.59 7.11 -5.20 -0.04 1.55 16 17 N -0.37 -4.44 3.42 -62.18 -0.21 -4.65 16 18 C -0.03 -0.29 11.52 -16.63 -0.19 -0.48 16 19 C 0.06 0.61 7.26 -83.90 -0.61 0.00 16 20 N -0.88 -5.86 9.20 32.30 0.30 -5.56 16 21 C 0.01 0.08 12.03 -17.22 -0.21 -0.13 16 22 N -0.25 -3.43 11.65 30.70 0.36 -3.07 16 23 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 24 H 0.00 0.10 7.20 -51.93 -0.37 -0.28 16 25 H 0.00 0.03 7.57 -51.93 -0.39 -0.37 16 26 H 0.07 0.97 8.14 -51.93 -0.42 0.54 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.08 1.25 8.13 -51.93 -0.42 0.82 16 29 H 0.08 1.03 8.13 -51.93 -0.42 0.61 16 30 H 0.14 1.04 8.07 -51.93 -0.42 0.62 16 31 H 0.13 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.17 1.23 8.06 -52.48 -0.42 0.81 16 33 H 0.40 2.01 8.96 -40.82 -0.37 1.64 16 34 H 0.40 1.95 8.96 -40.82 -0.37 1.59 16 35 H 0.18 1.44 8.06 -52.49 -0.42 1.02 16 LS Contribution 314.65 15.07 4.74 4.74 Total: -1.00 -37.03 314.65 -4.87 -41.90 By element: Atomic # 1 Polarization: 3.92 SS G_CDS: -4.47 Total: -0.54 kcal Atomic # 6 Polarization: 1.53 SS G_CDS: -0.57 Total: 0.95 kcal Atomic # 7 Polarization: -41.07 SS G_CDS: 1.22 Total: -39.86 kcal Atomic # 8 Polarization: -22.47 SS G_CDS: -1.12 Total: -23.59 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -4.67 Total: 16.40 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -37.03 -4.87 -41.90 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385829488.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.486 kcal (2) G-P(sol) polarization free energy of solvation -37.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.871 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds