Wall clock time and date at job start Mon Mar 30 2020 05:39:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86796 * 120.00129 * 2 1 4 4 H 1.48501 * 109.47172 * 270.00114 * 3 2 1 5 5 H 1.48493 * 109.47236 * 30.00502 * 3 2 1 6 6 H 1.48502 * 109.46738 * 150.00131 * 3 2 1 7 7 C 1.37884 * 119.99489 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00089 * 359.97438 * 7 2 1 9 9 C 1.50700 * 119.99416 * 179.97438 * 7 2 1 10 10 O 1.42908 * 109.46758 * 179.97438 * 9 7 2 11 11 C 1.42899 * 114.00004 * 179.97438 * 10 9 7 12 12 C 1.52998 * 109.47007 * 180.02562 * 11 10 9 13 13 O 1.45196 * 109.47070 * 65.00337 * 12 11 10 14 14 C 1.34234 * 116.99938 * 179.97438 * 13 12 11 15 15 O 1.20822 * 119.99973 * 0.02562 * 14 13 12 16 16 C 1.50700 * 120.00068 * 179.97438 * 14 13 12 17 17 N 1.46497 * 109.47128 * 180.02562 * 16 14 13 18 18 C 1.35963 * 126.07094 * 125.00118 * 17 16 14 19 19 C 1.35705 * 107.55016 * 179.97438 * 18 17 16 20 20 N 1.40802 * 126.06892 * 179.97438 * 19 18 17 21 21 C 1.40217 * 107.86798 * 0.02562 * 19 18 17 22 22 N 1.30868 * 108.35810 * 359.71614 * 21 19 18 23 23 H 0.96998 * 119.99982 * 359.97438 * 1 2 3 24 24 H 1.08995 * 109.47500 * 60.00209 * 9 7 2 25 25 H 1.09001 * 109.47294 * 299.99344 * 9 7 2 26 26 H 1.09001 * 109.46782 * 59.99770 * 11 10 9 27 27 H 1.09002 * 109.46914 * 300.00219 * 11 10 9 28 28 H 1.08996 * 109.47090 * 304.99969 * 12 11 10 29 29 H 1.08999 * 109.47084 * 185.00141 * 12 11 10 30 30 H 1.09004 * 109.46932 * 300.00373 * 16 14 13 31 31 H 1.08997 * 109.47392 * 59.99712 * 16 14 13 32 32 H 1.08004 * 126.22597 * 359.96280 * 18 17 16 33 33 H 0.97010 * 119.99619 * 0.02562 * 20 19 18 34 34 H 0.96991 * 120.00553 * 180.02562 * 20 19 18 35 35 H 1.07999 * 125.82135 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4468 2.6526 0.7001 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1942 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 8 3.9878 -2.5415 -0.0010 11 6 5.4123 -2.6544 -0.0021 12 6 5.8067 -4.1327 -0.0025 13 8 5.3716 -4.7493 -1.2429 14 6 5.6432 -6.0542 -1.4029 15 8 6.2248 -6.6610 -0.5349 16 6 5.2216 -6.7624 -2.6645 17 7 5.6302 -8.1676 -2.5955 18 6 4.8165 -9.2463 -2.7466 19 6 5.5822 -10.3585 -2.6125 20 7 5.1324 -11.6900 -2.6983 21 6 6.9008 -9.9467 -2.3720 22 7 6.9296 -8.6383 -2.3677 23 1 -0.4850 0.8400 0.0004 24 1 3.8752 -0.6806 0.8888 25 1 3.8745 -0.6802 -0.8912 26 1 5.8158 -2.1705 0.8874 27 1 5.8144 -2.1712 -0.8926 28 1 5.3315 -4.6357 0.8396 29 1 6.8896 -4.2198 0.0862 30 1 4.1382 -6.7041 -2.7692 31 1 5.6956 -6.2876 -3.5235 32 1 3.7539 -9.2223 -2.9384 33 1 4.1955 -11.8754 -2.8684 34 1 5.7592 -12.4218 -2.5875 35 1 7.7488 -10.5980 -2.2207 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385829488.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:17 Heat of formation + Delta-G solvation = -68.006265 kcal Electronic energy + Delta-G solvation = -19470.356074 eV Core-core repulsion = 16084.018505 eV Total energy + Delta-G solvation = -3386.337569 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -42.14996 -41.30581 -38.83920 -37.51621 -35.45676 -34.88945 -33.65093 -31.92464 -30.16777 -29.49252 -27.71899 -24.26034 -23.92123 -22.88342 -21.77078 -21.53112 -19.12067 -18.95894 -18.37890 -18.02074 -17.40995 -17.12618 -16.78607 -16.50607 -16.24860 -15.92390 -15.56461 -15.03040 -14.82017 -14.57165 -14.45336 -13.90745 -13.54160 -13.39598 -13.27549 -12.99445 -12.64937 -12.33586 -11.91856 -11.87071 -11.74912 -11.60470 -11.49773 -11.35297 -10.92983 -10.42536 -10.35485 -8.36746 -8.07926 -6.45076 0.80138 1.06004 1.31443 1.35351 1.38476 1.49059 1.83481 2.08050 2.30453 2.93566 2.96234 3.25984 3.53917 3.78071 3.90595 4.05276 4.09559 4.16369 4.24183 4.35658 4.48212 4.57053 4.67941 4.70938 4.84843 5.00353 5.32431 5.43119 5.53817 5.91132 5.99021 6.58324 6.61776 6.70768 6.73078 6.82313 7.19139 7.30544 8.80399 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.037634 B = 0.002957 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.836945 B = 9466.251877 C = 9975.467453 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C 0.012 3.988 3 Si 0.957 3.043 4 H -0.258 1.258 5 H -0.276 1.276 6 H -0.242 1.242 7 C -0.547 4.547 8 H 0.029 0.971 9 C 0.178 3.822 10 O -0.406 6.406 11 C 0.051 3.949 12 C 0.077 3.923 13 O -0.353 6.353 14 C 0.445 3.555 15 O -0.524 6.524 16 C 0.154 3.846 17 N -0.378 5.378 18 C -0.037 4.037 19 C 0.054 3.946 20 N -0.867 5.867 21 C 0.000 4.000 22 N -0.296 5.296 23 H 0.273 0.727 24 H 0.017 0.983 25 H 0.017 0.983 26 H 0.090 0.910 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.107 0.893 30 H 0.170 0.830 31 H 0.151 0.849 32 H 0.200 0.800 33 H 0.404 0.596 34 H 0.405 0.595 35 H 0.201 0.799 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.016 -17.317 -7.645 23.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.186 4.186 3 Si 0.778 3.222 4 H -0.183 1.183 5 H -0.201 1.201 6 H -0.166 1.166 7 C -0.585 4.585 8 H 0.047 0.953 9 C 0.102 3.898 10 O -0.326 6.326 11 C -0.025 4.025 12 C 0.003 3.997 13 O -0.268 6.268 14 C 0.287 3.713 15 O -0.412 6.412 16 C 0.031 3.969 17 N -0.167 5.167 18 C -0.183 4.183 19 C -0.055 4.055 20 N -0.416 5.416 21 C -0.189 4.189 22 N -0.117 5.117 23 H 0.082 0.918 24 H 0.035 0.965 25 H 0.034 0.966 26 H 0.108 0.892 27 H 0.088 0.912 28 H 0.084 0.916 29 H 0.125 0.875 30 H 0.188 0.812 31 H 0.169 0.831 32 H 0.217 0.783 33 H 0.233 0.767 34 H 0.235 0.765 35 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges 14.622 -16.274 -7.224 23.040 hybrid contribution -0.588 -0.269 0.313 0.718 sum 14.034 -16.543 -6.911 22.768 Atomic orbital electron populations 1.70035 1.08335 1.28824 1.51031 1.25871 0.95820 1.03509 0.93421 0.85587 0.79493 0.77276 0.79858 1.18277 1.20076 1.16565 1.21171 0.91058 0.93818 1.52464 0.95268 1.20372 0.93259 0.80604 0.95522 1.87915 1.20595 1.28709 1.95392 1.22742 0.82862 0.94182 1.02723 1.23203 1.00585 0.92047 0.83833 1.86562 1.73889 1.24471 1.41919 1.24370 0.76118 0.81004 0.89823 1.90703 1.39016 1.67304 1.44185 1.21239 1.05476 0.76581 0.93581 1.47730 1.05349 1.04981 1.58689 1.22229 0.98569 0.85156 1.12319 1.17875 0.92328 0.87457 1.07866 1.41467 1.12355 1.01042 1.86702 1.24059 0.98042 0.92238 1.04564 1.77238 1.00595 1.12426 1.21490 0.91790 0.96520 0.96558 0.89240 0.91244 0.91634 0.87547 0.81244 0.83144 0.78337 0.76685 0.76547 0.78205 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.83 13.96 21.45 0.30 -58.53 16 2 C 0.01 0.68 5.47 84.66 0.46 1.15 16 3 Si 0.96 42.33 27.47 68.60 1.88 44.21 16 4 H -0.26 -10.78 7.11 99.48 0.71 -10.08 16 5 H -0.28 -11.83 7.11 99.48 0.71 -11.12 16 6 H -0.24 -9.73 6.54 99.48 0.65 -9.08 16 7 C -0.55 -32.95 9.99 25.60 0.26 -32.69 16 8 H 0.03 1.99 8.06 -2.91 -0.02 1.96 16 9 C 0.18 8.66 4.76 71.24 0.34 9.00 16 10 O -0.41 -18.44 10.30 -145.57 -1.50 -19.94 16 11 C 0.05 1.63 6.33 71.98 0.46 2.09 16 12 C 0.08 2.26 5.84 71.98 0.42 2.68 16 13 O -0.35 -10.76 10.19 -48.81 -0.50 -11.26 16 14 C 0.44 12.63 7.99 71.24 0.57 13.19 16 15 O -0.52 -18.40 15.47 21.98 0.34 -18.06 16 16 C 0.15 2.99 7.11 85.63 0.61 3.59 16 17 N -0.38 -8.79 3.42 -350.64 -1.20 -9.99 16 18 C -0.04 -0.71 11.52 83.47 0.96 0.26 16 19 C 0.05 1.02 7.26 37.59 0.27 1.29 16 20 N -0.87 -10.11 9.20 -51.74 -0.48 -10.59 16 21 C 0.00 0.01 12.03 85.32 1.03 1.03 16 22 N -0.30 -8.10 11.65 -56.78 -0.66 -8.76 16 23 H 0.27 15.60 8.31 -92.71 -0.77 14.83 16 24 H 0.02 0.78 7.20 -2.39 -0.02 0.76 16 25 H 0.02 0.76 7.57 -2.39 -0.02 0.74 16 26 H 0.09 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.07 1.98 8.14 -2.39 -0.02 1.97 16 28 H 0.07 2.08 8.13 -2.39 -0.02 2.06 16 29 H 0.11 2.56 8.13 -2.39 -0.02 2.54 16 30 H 0.17 2.20 8.07 -2.38 -0.02 2.18 16 31 H 0.15 2.13 8.14 -2.39 -0.02 2.11 16 32 H 0.20 2.41 8.06 -2.91 -0.02 2.39 16 33 H 0.40 3.34 8.96 -92.70 -0.83 2.50 16 34 H 0.41 3.31 8.96 -92.72 -0.83 2.48 16 35 H 0.20 3.06 8.06 -2.91 -0.02 3.04 16 Total: -1.00 -82.63 314.65 2.97 -79.66 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: -0.59 Total: 11.66 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 5.37 Total: 1.59 kcal Atomic # 7 Polarization: -85.83 SS G_CDS: -2.04 Total: -87.87 kcal Atomic # 8 Polarization: -47.60 SS G_CDS: -1.66 Total: -49.26 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 1.88 Total: 44.21 kcal Total: -82.63 2.97 -79.66 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385829488.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.652 kcal (2) G-P(sol) polarization free energy of solvation -82.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.973 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds