Wall clock time and date at job start Mon Mar 30 2020 05:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31014 * 1 3 3 Si 1.86798 * 120.00135 * 2 1 4 4 H 1.48495 * 109.47572 * 270.00338 * 3 2 1 5 5 H 1.48502 * 109.47033 * 30.01070 * 3 2 1 6 6 H 1.48506 * 109.46784 * 150.00441 * 3 2 1 7 7 C 1.39586 * 119.99649 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00026 * 179.97438 * 7 2 1 9 9 N 1.36118 * 120.00184 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00061 * 180.02562 * 9 7 2 11 11 O 1.21500 * 120.00255 * 0.02562 * 10 9 7 12 12 C 1.48833 * 119.99873 * 180.02562 * 10 9 7 13 13 O 1.21435 * 120.00055 * 359.97438 * 12 10 9 14 14 N 1.34776 * 119.99873 * 180.02562 * 12 10 9 15 15 C 1.46498 * 119.99925 * 179.97438 * 14 12 10 16 16 H 1.09002 * 109.79472 * 43.49331 * 15 14 12 17 17 C 1.53064 * 109.63284 * 163.99005 * 15 14 12 18 18 C 1.51786 * 110.74287 * 34.79082 * 17 15 14 19 19 C 1.51967 * 113.93338 * 66.80391 * 18 17 15 20 20 C 1.52986 * 110.75884 * 293.16177 * 19 18 17 21 21 N 1.47200 * 108.79954 * 86.32401 * 20 19 18 22 22 C 1.33368 * 120.42565 * 287.98068 * 21 20 19 23 23 O 1.21289 * 119.89424 * 180.28631 * 22 21 20 24 24 H 0.97004 * 119.99774 * 359.97438 * 1 2 3 25 25 H 0.97004 * 119.99927 * 359.97438 * 9 7 2 26 26 H 0.96996 * 120.00363 * 0.02562 * 14 12 10 27 27 H 1.09002 * 109.22124 * 155.11766 * 17 15 14 28 28 H 1.09004 * 109.22336 * 274.50455 * 17 15 14 29 29 H 1.09002 * 108.61606 * 187.93120 * 18 17 15 30 30 H 1.09010 * 108.61481 * 305.68406 * 18 17 15 31 31 H 1.08996 * 109.43902 * 172.71875 * 19 18 17 32 32 H 1.08998 * 109.07210 * 53.36746 * 19 18 17 33 33 H 1.08994 * 109.60734 * 326.48574 * 20 19 18 34 34 H 1.08995 * 109.60703 * 206.15451 * 20 19 18 35 35 H 0.96998 * 119.79326 * 107.95613 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 2.4917 2.0465 -1.4000 5 1 1.4417 2.6526 0.7003 6 1 3.5418 1.4400 0.7000 7 6 2.0080 -1.2089 -0.0005 8 1 3.0880 -1.2090 -0.0010 9 7 1.3274 -2.3877 -0.0005 10 6 2.0012 -3.5549 -0.0005 11 8 3.2162 -3.5550 -0.0001 12 6 1.2570 -4.8438 -0.0011 13 8 0.0426 -4.8437 -0.0011 14 7 1.9308 -6.0110 -0.0006 15 6 1.1982 -7.2797 -0.0006 16 1 0.3696 -7.2275 -0.7068 17 6 2.1413 -8.4181 -0.3976 18 6 3.5407 -8.1669 0.1337 19 6 3.6429 -8.2164 1.6492 20 6 2.8747 -7.0549 2.2826 21 7 1.4671 -7.4520 2.4494 22 6 0.6656 -7.5598 1.3889 23 8 -0.4940 -7.8826 1.5380 24 1 -0.4850 0.8401 0.0004 25 1 0.3573 -2.3876 0.0002 26 1 2.9008 -6.0111 0.0005 27 1 1.7647 -9.3554 0.0120 28 1 2.1784 -8.4908 -1.4846 29 1 4.2115 -8.9178 -0.2839 30 1 3.8701 -7.1842 -0.2042 31 1 4.6905 -8.1565 1.9442 32 1 3.2248 -9.1584 2.0037 33 1 2.9337 -6.1806 1.6345 34 1 3.3057 -6.8187 3.2555 35 1 1.1204 -7.6369 3.3362 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000391726191.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:14 Heat of formation + Delta-G solvation = -95.941783 kcal Electronic energy + Delta-G solvation = -21276.782150 eV Core-core repulsion = 17889.233206 eV Total energy + Delta-G solvation = -3387.548944 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.93958 -39.03335 -37.31762 -36.85395 -34.66991 -34.19387 -32.85414 -31.47057 -30.37853 -26.65427 -25.66660 -24.15811 -23.06360 -20.92874 -19.80321 -19.58969 -18.41378 -17.34982 -17.09478 -16.71587 -15.64482 -15.26186 -14.97100 -14.91867 -14.48629 -14.15221 -13.99901 -13.90553 -13.49860 -13.07610 -12.73382 -12.56424 -12.47628 -12.01255 -11.82224 -11.24500 -11.07731 -10.98028 -10.94763 -10.59146 -10.46978 -10.39798 -10.07969 -9.77605 -9.12499 -8.67133 -8.35746 -8.29125 -6.72951 -4.05342 2.31640 2.61851 3.10621 3.12754 3.18114 3.32095 3.39872 4.00928 4.16766 4.40519 4.49529 4.66191 4.68120 4.88637 4.97931 5.12902 5.17472 5.37641 5.39403 5.58044 5.67520 5.75223 5.80129 5.86906 5.96947 6.09124 6.53710 6.84770 7.25009 7.28311 7.54570 7.75289 8.23231 8.31627 8.51338 8.88785 9.24362 9.77278 10.41490 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.030993 B = 0.004886 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.227404 B = 5729.268223 C = 6082.053745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.865 5.865 2 C 0.032 3.968 3 Si 0.940 3.060 4 H -0.273 1.273 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.306 4.306 8 H 0.114 0.886 9 N -0.494 5.494 10 C 0.391 3.609 11 O -0.600 6.600 12 C 0.506 3.494 13 O -0.531 6.531 14 N -0.710 5.710 15 C 0.132 3.868 16 H 0.118 0.882 17 C -0.121 4.121 18 C -0.131 4.131 19 C -0.139 4.139 20 C 0.084 3.916 21 N -0.717 5.717 22 C 0.515 3.485 23 O -0.544 6.544 24 H 0.282 0.718 25 H 0.405 0.595 26 H 0.414 0.586 27 H 0.080 0.920 28 H 0.085 0.915 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.098 0.902 34 H 0.086 0.914 35 H 0.397 0.603 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.386 -13.766 1.971 15.746 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.176 4.176 3 Si 0.766 3.234 4 H -0.198 1.198 5 H -0.205 1.205 6 H -0.188 1.188 7 C -0.437 4.437 8 H 0.132 0.868 9 N -0.128 5.128 10 C 0.175 3.825 11 O -0.489 6.489 12 C 0.291 3.709 13 O -0.405 6.405 14 N -0.373 5.373 15 C 0.024 3.976 16 H 0.135 0.865 17 C -0.159 4.159 18 C -0.169 4.169 19 C -0.177 4.177 20 C -0.040 4.040 21 N -0.370 5.370 22 C 0.299 3.701 23 O -0.420 6.420 24 H 0.092 0.908 25 H 0.241 0.759 26 H 0.258 0.742 27 H 0.098 0.902 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.116 0.884 34 H 0.104 0.896 35 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 6.592 -13.728 1.837 15.339 hybrid contribution 0.114 0.718 0.391 0.826 sum 6.706 -13.010 2.228 14.805 Atomic orbital electron populations 1.69490 1.06577 1.29543 1.44612 1.25626 0.95637 1.00592 0.95729 0.85700 0.79353 0.79540 0.78845 1.19820 1.20475 1.18850 1.19903 0.94019 0.81792 1.47965 0.86828 1.41580 1.10579 1.04249 1.56348 1.18814 0.87766 0.84004 0.91872 1.90570 1.12685 1.86520 1.59148 1.20926 0.87758 0.86011 0.76183 1.90756 1.13961 1.87872 1.47952 1.46307 1.11256 1.03870 1.75874 1.21355 0.96895 0.84880 0.94493 0.86456 1.21558 0.94598 0.97215 1.02505 1.21227 0.96653 1.03112 0.95915 1.21850 1.01189 0.99301 0.95398 1.22258 0.80184 0.98494 1.03109 1.45821 1.11911 1.69804 1.09429 1.20864 0.85483 0.76062 0.87690 1.90740 1.17087 1.47847 1.86298 0.90770 0.75943 0.74200 0.90163 0.89626 0.90757 0.91041 0.90147 0.91206 0.88405 0.89601 0.76706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -22.93 13.03 55.53 0.72 -22.21 16 2 C 0.03 0.81 5.51 -17.40 -0.10 0.71 16 3 Si 0.94 19.64 29.56 -169.99 -5.02 14.62 16 4 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 5 H -0.28 -5.72 7.11 56.52 0.40 -5.31 16 6 H -0.26 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.31 -8.24 9.67 -15.15 -0.15 -8.39 16 8 H 0.11 3.09 7.15 -52.48 -0.38 2.72 16 9 N -0.49 -12.98 5.25 -11.59 -0.06 -13.04 16 10 C 0.39 9.53 7.82 -11.87 -0.09 9.44 16 11 O -0.60 -15.16 16.03 5.37 0.09 -15.08 16 12 C 0.51 10.81 7.72 -11.87 -0.09 10.72 16 13 O -0.53 -12.73 16.16 5.42 0.09 -12.65 16 14 N -0.71 -11.52 3.07 -55.18 -0.17 -11.69 16 15 C 0.13 1.92 2.69 -68.69 -0.18 1.73 16 16 H 0.12 1.87 7.86 -51.93 -0.41 1.47 16 17 C -0.12 -1.18 5.57 -27.31 -0.15 -1.34 16 18 C -0.13 -1.10 5.19 -27.87 -0.14 -1.25 16 19 C -0.14 -1.12 5.76 -27.26 -0.16 -1.28 16 20 C 0.08 0.89 6.42 -3.67 -0.02 0.87 16 21 N -0.72 -9.23 5.28 -59.90 -0.32 -9.55 16 22 C 0.51 8.35 6.49 -11.25 -0.07 8.27 16 23 O -0.54 -10.97 17.92 5.55 0.10 -10.87 16 24 H 0.28 6.92 8.30 -40.82 -0.34 6.59 16 25 H 0.41 10.87 7.35 -40.82 -0.30 10.57 16 26 H 0.41 6.04 3.84 -40.82 -0.16 5.89 16 27 H 0.08 0.74 7.86 -51.93 -0.41 0.33 16 28 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.07 0.67 5.71 -51.92 -0.30 0.37 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.55 8.05 -51.93 -0.42 0.13 16 33 H 0.10 1.29 4.51 -51.93 -0.23 1.06 16 34 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.40 4.60 8.91 -40.82 -0.36 4.24 16 LS Contribution 292.56 15.07 4.41 4.41 Total: -1.00 -32.87 292.56 -5.11 -37.98 By element: Atomic # 1 Polarization: 22.35 SS G_CDS: -3.79 Total: 18.57 kcal Atomic # 6 Polarization: 20.66 SS G_CDS: -1.16 Total: 19.50 kcal Atomic # 7 Polarization: -56.66 SS G_CDS: 0.18 Total: -56.49 kcal Atomic # 8 Polarization: -38.86 SS G_CDS: 0.27 Total: -38.59 kcal Atomic # 14 Polarization: 19.64 SS G_CDS: -5.02 Total: 14.62 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -32.87 -5.11 -37.98 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000391726191.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.959 kcal (2) G-P(sol) polarization free energy of solvation -32.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds