Wall clock time and date at job start Mon Mar 30 2020 05:39:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31014 * 1 3 3 Si 1.86798 * 120.00135 * 2 1 4 4 H 1.48495 * 109.47572 * 270.00338 * 3 2 1 5 5 H 1.48502 * 109.47033 * 30.01070 * 3 2 1 6 6 H 1.48506 * 109.46784 * 150.00441 * 3 2 1 7 7 C 1.39586 * 119.99649 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00026 * 179.97438 * 7 2 1 9 9 N 1.36118 * 120.00184 * 359.97438 * 7 2 1 10 10 C 1.34776 * 120.00061 * 180.02562 * 9 7 2 11 11 O 1.21500 * 120.00255 * 0.02562 * 10 9 7 12 12 C 1.48833 * 119.99873 * 180.02562 * 10 9 7 13 13 O 1.21435 * 120.00055 * 359.97438 * 12 10 9 14 14 N 1.34776 * 119.99873 * 180.02562 * 12 10 9 15 15 C 1.46498 * 119.99925 * 179.97438 * 14 12 10 16 16 H 1.09002 * 109.79472 * 43.49331 * 15 14 12 17 17 C 1.53064 * 109.63284 * 163.99005 * 15 14 12 18 18 C 1.51786 * 110.74287 * 34.79082 * 17 15 14 19 19 C 1.51967 * 113.93338 * 66.80391 * 18 17 15 20 20 C 1.52986 * 110.75884 * 293.16177 * 19 18 17 21 21 N 1.47200 * 108.79954 * 86.32401 * 20 19 18 22 22 C 1.33368 * 120.42565 * 287.98068 * 21 20 19 23 23 O 1.21289 * 119.89424 * 180.28631 * 22 21 20 24 24 H 0.97004 * 119.99774 * 359.97438 * 1 2 3 25 25 H 0.97004 * 119.99927 * 359.97438 * 9 7 2 26 26 H 0.96996 * 120.00363 * 0.02562 * 14 12 10 27 27 H 1.09002 * 109.22124 * 155.11766 * 17 15 14 28 28 H 1.09004 * 109.22336 * 274.50455 * 17 15 14 29 29 H 1.09002 * 108.61606 * 187.93120 * 18 17 15 30 30 H 1.09010 * 108.61481 * 305.68406 * 18 17 15 31 31 H 1.08996 * 109.43902 * 172.71875 * 19 18 17 32 32 H 1.08998 * 109.07210 * 53.36746 * 19 18 17 33 33 H 1.08994 * 109.60734 * 326.48574 * 20 19 18 34 34 H 1.08995 * 109.60703 * 206.15451 * 20 19 18 35 35 H 0.96998 * 119.79326 * 107.95613 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 14 2.2442 1.6177 0.0000 4 1 2.4917 2.0465 -1.4000 5 1 1.4417 2.6526 0.7003 6 1 3.5418 1.4400 0.7000 7 6 2.0080 -1.2089 -0.0005 8 1 3.0880 -1.2090 -0.0010 9 7 1.3274 -2.3877 -0.0005 10 6 2.0012 -3.5549 -0.0005 11 8 3.2162 -3.5550 -0.0001 12 6 1.2570 -4.8438 -0.0011 13 8 0.0426 -4.8437 -0.0011 14 7 1.9308 -6.0110 -0.0006 15 6 1.1982 -7.2797 -0.0006 16 1 0.3696 -7.2275 -0.7068 17 6 2.1413 -8.4181 -0.3976 18 6 3.5407 -8.1669 0.1337 19 6 3.6429 -8.2164 1.6492 20 6 2.8747 -7.0549 2.2826 21 7 1.4671 -7.4520 2.4494 22 6 0.6656 -7.5598 1.3889 23 8 -0.4940 -7.8826 1.5380 24 1 -0.4850 0.8401 0.0004 25 1 0.3573 -2.3876 0.0002 26 1 2.9008 -6.0111 0.0005 27 1 1.7647 -9.3554 0.0120 28 1 2.1784 -8.4908 -1.4846 29 1 4.2115 -8.9178 -0.2839 30 1 3.8701 -7.1842 -0.2042 31 1 4.6905 -8.1565 1.9442 32 1 3.2248 -9.1584 2.0037 33 1 2.9337 -6.1806 1.6345 34 1 3.3057 -6.8187 3.2555 35 1 1.1204 -7.6369 3.3362 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000391726191.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:39:14 Heat of formation + Delta-G solvation = -122.844286 kcal Electronic energy + Delta-G solvation = -21277.948730 eV Core-core repulsion = 17889.233206 eV Total energy + Delta-G solvation = -3388.715524 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.26218 -40.72228 -39.08291 -38.16613 -36.40255 -35.63096 -34.02952 -33.42691 -31.52103 -28.13137 -27.18305 -25.14005 -24.76916 -22.04257 -21.29014 -20.74796 -20.39141 -18.87019 -18.49473 -18.04069 -17.33116 -16.76092 -16.59203 -16.29194 -15.86809 -15.66964 -15.37332 -14.98084 -14.83195 -14.56622 -14.35081 -13.74871 -13.64919 -13.51093 -12.97302 -12.96270 -12.58803 -12.35993 -12.10145 -12.03914 -11.74474 -11.67952 -11.66535 -11.28734 -10.32971 -10.29437 -10.28935 -9.98983 -8.67162 -6.12078 0.50976 1.25378 1.43205 1.47293 1.58041 1.84905 2.22538 2.28772 2.37307 3.13485 3.20235 3.38755 3.61138 3.80201 3.89775 3.96642 4.11949 4.27020 4.55262 4.64500 4.65263 4.89962 5.01967 5.09880 5.13744 5.21360 5.24431 5.39269 5.64357 5.78507 6.04050 6.15726 6.32220 6.75259 6.94317 7.11345 7.24264 7.75783 8.48536 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.030993 B = 0.004886 C = 0.004603 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.227404 B = 5729.268223 C = 6082.053745 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C -0.006 4.006 3 Si 1.012 2.988 4 H -0.264 1.264 5 H -0.270 1.270 6 H -0.260 1.260 7 C -0.343 4.343 8 H 0.105 0.895 9 N -0.509 5.509 10 C 0.392 3.608 11 O -0.609 6.609 12 C 0.512 3.488 13 O -0.561 6.561 14 N -0.681 5.681 15 C 0.128 3.872 16 H 0.100 0.900 17 C -0.113 4.113 18 C -0.132 4.132 19 C -0.133 4.133 20 C 0.077 3.923 21 N -0.706 5.706 22 C 0.507 3.493 23 O -0.593 6.593 24 H 0.289 0.711 25 H 0.399 0.601 26 H 0.425 0.575 27 H 0.092 0.908 28 H 0.104 0.896 29 H 0.105 0.895 30 H 0.061 0.939 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.109 0.891 35 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.560 -14.620 2.128 17.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.210 4.210 3 Si 0.833 3.167 4 H -0.189 1.189 5 H -0.194 1.194 6 H -0.184 1.184 7 C -0.472 4.472 8 H 0.122 0.878 9 N -0.143 5.143 10 C 0.176 3.824 11 O -0.498 6.498 12 C 0.296 3.704 13 O -0.439 6.439 14 N -0.343 5.343 15 C 0.020 3.980 16 H 0.118 0.882 17 C -0.151 4.151 18 C -0.170 4.170 19 C -0.171 4.171 20 C -0.046 4.046 21 N -0.357 5.357 22 C 0.292 3.708 23 O -0.473 6.473 24 H 0.099 0.901 25 H 0.233 0.767 26 H 0.271 0.729 27 H 0.111 0.889 28 H 0.122 0.878 29 H 0.124 0.876 30 H 0.080 0.920 31 H 0.124 0.876 32 H 0.097 0.903 33 H 0.089 0.911 34 H 0.128 0.872 35 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges 8.844 -14.617 2.010 17.202 hybrid contribution -0.517 0.857 0.383 1.072 sum 8.326 -13.760 2.393 16.260 Atomic orbital electron populations 1.69567 1.08013 1.30882 1.44956 1.26601 0.96456 1.03681 0.94295 0.84659 0.78038 0.74811 0.79210 1.18931 1.19429 1.18415 1.20036 0.93838 0.82824 1.50545 0.87766 1.41687 1.10230 1.04925 1.57422 1.19353 0.87855 0.84769 0.90374 1.90541 1.13164 1.87050 1.59086 1.20422 0.87137 0.86403 0.76488 1.90751 1.15053 1.88258 1.49858 1.46173 1.11730 1.03144 1.73273 1.21551 0.97582 0.85248 0.93587 0.88197 1.21630 0.94315 0.95210 1.03908 1.21282 0.95919 1.03521 0.96250 1.21836 1.02182 0.98132 0.94911 1.22473 0.79095 0.98751 1.04300 1.45872 1.12721 1.68068 1.09047 1.21131 0.85099 0.75746 0.88820 1.90714 1.19090 1.50474 1.87015 0.90107 0.76703 0.72858 0.88938 0.87751 0.87649 0.92035 0.87586 0.90312 0.91123 0.87225 0.75936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -48.20 13.03 21.77 0.28 -47.92 16 2 C -0.01 -0.31 5.51 85.14 0.47 0.16 16 3 Si 1.01 39.94 29.56 68.60 2.03 41.97 16 4 H -0.26 -10.04 7.11 99.48 0.71 -9.33 16 5 H -0.27 -10.13 7.11 99.48 0.71 -9.43 16 6 H -0.26 -10.00 7.11 99.48 0.71 -9.30 16 7 C -0.34 -18.84 9.67 84.35 0.82 -18.03 16 8 H 0.10 5.79 7.15 -2.91 -0.02 5.77 16 9 N -0.51 -27.61 5.25 -308.87 -1.62 -29.23 16 10 C 0.39 19.45 7.82 87.08 0.68 20.14 16 11 O -0.61 -30.91 16.03 -3.71 -0.06 -30.97 16 12 C 0.51 22.22 7.72 87.08 0.67 22.89 16 13 O -0.56 -27.79 16.16 -3.51 -0.06 -27.85 16 14 N -0.68 -21.76 3.07 -446.82 -1.37 -23.13 16 15 C 0.13 3.64 2.69 44.50 0.12 3.75 16 16 H 0.10 3.24 7.86 -2.39 -0.02 3.22 16 17 C -0.11 -1.91 5.57 30.22 0.17 -1.74 16 18 C -0.13 -1.73 5.19 29.85 0.15 -1.57 16 19 C -0.13 -1.64 5.76 30.25 0.17 -1.46 16 20 C 0.08 1.46 6.42 86.24 0.55 2.02 16 21 N -0.71 -17.35 5.28 -462.60 -2.44 -19.79 16 22 C 0.51 16.32 6.49 88.11 0.57 16.90 16 23 O -0.59 -24.41 17.92 -3.06 -0.05 -24.46 16 24 H 0.29 14.24 8.30 -92.71 -0.77 13.47 16 25 H 0.40 22.31 7.35 -92.71 -0.68 21.63 16 26 H 0.42 11.87 3.84 -92.71 -0.36 11.51 16 27 H 0.09 1.42 7.86 -2.39 -0.02 1.40 16 28 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 30 H 0.06 0.96 5.71 -2.38 -0.01 0.94 16 31 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.08 0.91 8.05 -2.39 -0.02 0.89 16 33 H 0.07 1.76 4.51 -2.39 -0.01 1.75 16 34 H 0.11 1.58 8.14 -2.39 -0.02 1.57 16 35 H 0.40 8.94 8.91 -92.71 -0.83 8.11 16 Total: -1.00 -73.45 292.56 0.39 -73.06 By element: Atomic # 1 Polarization: 45.97 SS G_CDS: -0.69 Total: 45.28 kcal Atomic # 6 Polarization: 38.67 SS G_CDS: 4.38 Total: 43.05 kcal Atomic # 7 Polarization: -114.92 SS G_CDS: -5.15 Total: -120.07 kcal Atomic # 8 Polarization: -83.12 SS G_CDS: -0.17 Total: -83.29 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 2.03 Total: 41.97 kcal Total: -73.45 0.39 -73.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000391726191.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.786 kcal (2) G-P(sol) polarization free energy of solvation -73.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.844 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds