Wall clock time and date at job start Mon Mar 30 2020 06:02:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47505 * 2 1 4 4 C 1.46819 * 124.33228 * 269.98416 * 3 2 1 5 5 C 1.54476 * 105.44453 * 196.99830 * 4 3 2 6 6 H 1.09000 * 110.97541 * 92.76563 * 5 4 3 7 7 N 1.46500 * 110.97347 * 216.49366 * 5 4 3 8 8 C 1.34773 * 120.00429 * 201.91245 * 7 5 4 9 9 O 1.21443 * 119.99990 * 359.97438 * 8 7 5 10 10 C 1.48835 * 120.00277 * 179.72120 * 8 7 5 11 11 O 1.21503 * 119.99715 * 0.27324 * 10 8 7 12 12 N 1.34769 * 120.00097 * 180.27494 * 10 8 7 13 13 C 1.36126 * 119.99952 * 180.02562 * 12 10 8 14 14 H 1.08002 * 119.99685 * 359.97438 * 13 12 10 15 15 C 1.39582 * 119.99932 * 179.97438 * 13 12 10 16 16 N 1.31014 * 120.00244 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00042 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46793 * 59.99939 * 17 15 13 19 19 H 1.48494 * 109.47228 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47000 * 299.99846 * 17 15 13 21 21 C 1.54629 * 101.79903 * 334.62903 * 5 4 3 22 22 C 1.34421 * 124.35114 * 90.01665 * 3 2 1 23 23 O 1.21284 * 124.93896 * 359.55892 * 22 3 2 24 24 H 1.09006 * 109.46656 * 60.00043 * 1 2 3 25 25 H 1.09002 * 109.47169 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47141 * 300.00800 * 1 2 3 27 27 H 1.08999 * 109.47141 * 239.99199 * 2 1 3 28 28 H 1.09006 * 109.46656 * 119.99957 * 2 1 3 29 29 H 1.08994 * 110.23909 * 78.01928 * 4 3 2 30 30 H 1.09006 * 110.28122 * 315.99780 * 4 3 2 31 31 H 0.97000 * 119.99459 * 21.90356 * 7 5 4 32 32 H 0.97000 * 120.00347 * 359.97438 * 12 10 8 33 33 H 0.96999 * 120.00097 * 180.02562 * 16 15 13 34 34 H 1.08995 * 110.48972 * 143.46095 * 21 5 4 35 35 H 1.09008 * 110.48319 * 266.10463 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2948 2.1617 -1.2124 5 6 3.1745 3.3440 -0.7489 6 1 4.2333 3.1038 -0.8453 7 7 2.8468 4.5639 -1.4910 8 6 3.7466 5.5637 -1.5752 9 8 4.8289 5.4536 -1.0355 10 6 3.4160 6.8005 -2.3343 11 8 2.3329 6.9108 -2.8739 12 7 4.3179 7.7980 -2.4231 13 6 4.0153 8.9293 -3.1170 14 1 3.0526 9.0274 -3.5966 15 6 4.9492 9.9627 -3.2086 16 7 6.1168 9.8439 -2.6263 17 14 4.5342 11.5150 -4.1613 18 1 3.3413 12.1619 -3.5582 19 1 5.6852 12.4516 -4.1071 20 1 4.2460 11.1655 -5.5756 21 6 2.7700 3.4752 0.7378 22 6 2.2716 2.0962 1.1098 23 8 2.1217 1.6943 2.2442 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5140 0.8899 27 1 1.8934 -0.5140 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 1.3643 2.5304 -1.6438 30 1 2.8332 1.5532 -1.9390 31 1 1.9822 4.6519 -1.9218 32 1 5.1824 7.7101 -1.9921 33 1 6.7656 10.5622 -2.6897 34 1 3.6334 3.7457 1.3456 35 1 1.9751 4.2121 0.8532 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000391737072.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:53 Heat of formation + Delta-G solvation = -104.519189 kcal Electronic energy + Delta-G solvation = -20148.085608 eV Core-core repulsion = 16760.164720 eV Total energy + Delta-G solvation = -3387.920888 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.77518 -39.40557 -37.41331 -36.57160 -35.00915 -34.23949 -32.38794 -31.44351 -29.25315 -27.69947 -25.93162 -23.91917 -23.15091 -21.34642 -19.95924 -19.35721 -18.41784 -17.29396 -16.89610 -16.57190 -15.80389 -15.52629 -14.96532 -14.80965 -14.37966 -14.07155 -13.98441 -13.80117 -13.67777 -13.36137 -12.86176 -12.68553 -12.56686 -12.24688 -11.87594 -11.81880 -11.39849 -11.34766 -11.22049 -10.64470 -10.52725 -10.42754 -10.06190 -9.76767 -9.00279 -8.95735 -8.37553 -8.29440 -6.73614 -4.05840 2.30460 2.45287 2.66987 3.10649 3.13129 3.14186 3.25419 3.99204 4.11013 4.20127 4.36054 4.68266 4.75791 4.82265 4.93559 4.98245 5.07484 5.12513 5.21580 5.35318 5.41353 5.55748 5.73581 5.80493 5.87774 5.98334 6.29364 6.56487 6.87036 7.24647 7.54645 7.75394 7.99842 8.22779 8.49514 8.88474 9.23929 9.77289 10.40848 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.048023 B = 0.003429 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.911386 B = 8164.309995 C = 8446.758521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.122 3.878 3 N -0.620 5.620 4 C 0.098 3.902 5 C 0.138 3.862 6 H 0.113 0.887 7 N -0.707 5.707 8 C 0.518 3.482 9 O -0.541 6.541 10 C 0.391 3.609 11 O -0.598 6.598 12 N -0.495 5.495 13 C -0.306 4.306 14 H 0.113 0.887 15 C 0.032 3.968 16 N -0.866 5.866 17 Si 0.940 3.060 18 H -0.268 1.268 19 H -0.280 1.280 20 H -0.268 1.268 21 C -0.170 4.170 22 C 0.524 3.476 23 O -0.532 6.532 24 H 0.058 0.942 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.089 0.911 31 H 0.413 0.587 32 H 0.405 0.595 33 H 0.282 0.718 34 H 0.110 0.890 35 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.309 -14.889 1.495 16.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.000 4.000 3 N -0.355 5.355 4 C -0.026 4.026 5 C 0.031 3.969 6 H 0.131 0.869 7 N -0.362 5.362 8 C 0.303 3.697 9 O -0.417 6.417 10 C 0.175 3.825 11 O -0.487 6.487 12 N -0.129 5.129 13 C -0.437 4.437 14 H 0.131 0.869 15 C -0.175 4.175 16 N -0.504 5.504 17 Si 0.766 3.234 18 H -0.193 1.193 19 H -0.206 1.206 20 H -0.193 1.193 21 C -0.212 4.212 22 C 0.312 3.688 23 O -0.408 6.408 24 H 0.077 0.923 25 H 0.086 0.914 26 H 0.078 0.922 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.107 0.893 31 H 0.250 0.750 32 H 0.240 0.760 33 H 0.093 0.907 34 H 0.128 0.872 35 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.129 -15.060 2.153 16.401 hybrid contribution -0.061 0.708 -0.428 0.830 sum -6.190 -14.352 1.724 15.725 Atomic orbital electron populations 1.22171 0.95724 1.02346 1.02642 1.21360 0.94444 0.80964 1.03215 1.48343 1.66280 1.13895 1.07024 1.22327 0.99965 0.92723 0.87557 1.21675 1.00798 0.84400 0.89981 0.86944 1.45578 1.19981 1.15623 1.55030 1.20766 0.83652 0.84926 0.80400 1.90708 1.23172 1.80923 1.46855 1.18844 0.87446 0.85644 0.90537 1.90588 1.23752 1.81340 1.53041 1.41566 1.15689 1.13411 1.42242 1.19855 1.02825 0.92336 1.28696 0.86920 1.25606 0.94644 1.00174 0.97102 1.69471 1.05928 1.34664 1.40334 0.85766 0.78271 0.79543 0.79864 1.19315 1.20551 1.19315 1.22899 1.04476 0.95657 0.98149 1.20891 0.76289 0.87379 0.84281 1.90714 1.53709 1.75273 1.21128 0.92261 0.91417 0.92189 0.90216 0.89956 0.90186 0.89256 0.75040 0.75955 0.90740 0.87197 0.87073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.27 10.24 37.16 0.38 -0.89 16 2 C 0.12 0.99 6.65 -4.04 -0.03 0.96 16 3 N -0.62 -6.30 2.93 -172.37 -0.51 -6.80 16 4 C 0.10 0.86 7.08 -3.09 -0.02 0.84 16 5 C 0.14 1.64 3.48 -66.30 -0.23 1.41 16 6 H 0.11 1.41 7.63 -51.93 -0.40 1.02 16 7 N -0.71 -10.40 5.16 -52.85 -0.27 -10.67 16 8 C 0.52 10.24 7.87 -11.88 -0.09 10.15 16 9 O -0.54 -11.65 16.16 5.42 0.09 -11.56 16 10 C 0.39 9.28 7.82 -11.88 -0.09 9.19 16 11 O -0.60 -15.15 16.03 5.36 0.09 -15.07 16 12 N -0.50 -12.70 5.25 -11.59 -0.06 -12.76 16 13 C -0.31 -8.16 9.67 -15.14 -0.15 -8.31 16 14 H 0.11 3.05 7.15 -52.49 -0.38 2.68 16 15 C 0.03 0.81 5.51 -17.40 -0.10 0.72 16 16 N -0.87 -22.58 13.03 55.53 0.72 -21.86 16 17 Si 0.94 19.51 29.56 -169.99 -5.02 14.48 16 18 H -0.27 -5.51 7.11 56.52 0.40 -5.11 16 19 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 20 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 21 C -0.17 -2.12 6.59 -26.74 -0.18 -2.30 16 22 C 0.52 6.90 8.02 -10.86 -0.09 6.81 16 23 O -0.53 -8.89 17.60 5.55 0.10 -8.79 16 24 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 25 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 27 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.08 0.74 7.93 -51.93 -0.41 0.32 16 29 H 0.08 0.62 7.78 -51.93 -0.40 0.22 16 30 H 0.09 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.41 5.60 7.85 -40.82 -0.32 5.28 16 32 H 0.41 10.47 7.35 -40.82 -0.30 10.17 16 33 H 0.28 6.84 8.30 -40.82 -0.34 6.50 16 34 H 0.11 1.44 8.14 -51.93 -0.42 1.01 16 35 H 0.11 1.37 8.08 -51.92 -0.42 0.95 16 LS Contribution 310.88 15.07 4.68 4.68 Total: -1.00 -31.68 310.88 -5.07 -36.75 By element: Atomic # 1 Polarization: 17.33 SS G_CDS: -4.30 Total: 13.03 kcal Atomic # 6 Polarization: 19.15 SS G_CDS: -0.59 Total: 18.56 kcal Atomic # 7 Polarization: -51.97 SS G_CDS: -0.12 Total: -52.09 kcal Atomic # 8 Polarization: -35.69 SS G_CDS: 0.27 Total: -35.42 kcal Atomic # 14 Polarization: 19.51 SS G_CDS: -5.02 Total: 14.48 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -31.68 -5.07 -36.75 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000391737072.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.765 kcal (2) G-P(sol) polarization free energy of solvation -31.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds