Wall clock time and date at job start Mon Mar 30 2020 06:02:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46499 * 109.47505 * 2 1 4 4 C 1.46819 * 124.33228 * 269.98416 * 3 2 1 5 5 C 1.54476 * 105.44453 * 196.99830 * 4 3 2 6 6 H 1.09000 * 110.97541 * 92.76563 * 5 4 3 7 7 N 1.46500 * 110.97347 * 216.49366 * 5 4 3 8 8 C 1.34773 * 120.00429 * 201.91245 * 7 5 4 9 9 O 1.21443 * 119.99990 * 359.97438 * 8 7 5 10 10 C 1.48835 * 120.00277 * 179.72120 * 8 7 5 11 11 O 1.21503 * 119.99715 * 0.27324 * 10 8 7 12 12 N 1.34769 * 120.00097 * 180.27494 * 10 8 7 13 13 C 1.36126 * 119.99952 * 180.02562 * 12 10 8 14 14 H 1.08002 * 119.99685 * 359.97438 * 13 12 10 15 15 C 1.39582 * 119.99932 * 179.97438 * 13 12 10 16 16 N 1.31014 * 120.00244 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 120.00042 * 179.97438 * 15 13 12 18 18 H 1.48501 * 109.46793 * 59.99939 * 17 15 13 19 19 H 1.48494 * 109.47228 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.47000 * 299.99846 * 17 15 13 21 21 C 1.54629 * 101.79903 * 334.62903 * 5 4 3 22 22 C 1.34421 * 124.35114 * 90.01665 * 3 2 1 23 23 O 1.21284 * 124.93896 * 359.55892 * 22 3 2 24 24 H 1.09006 * 109.46656 * 60.00043 * 1 2 3 25 25 H 1.09002 * 109.47169 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47141 * 300.00800 * 1 2 3 27 27 H 1.08999 * 109.47141 * 239.99199 * 2 1 3 28 28 H 1.09006 * 109.46656 * 119.99957 * 2 1 3 29 29 H 1.08994 * 110.23909 * 78.01928 * 4 3 2 30 30 H 1.09006 * 110.28122 * 315.99780 * 4 3 2 31 31 H 0.97000 * 119.99459 * 21.90356 * 7 5 4 32 32 H 0.97000 * 120.00347 * 359.97438 * 12 10 8 33 33 H 0.96999 * 120.00097 * 180.02562 * 16 15 13 34 34 H 1.08995 * 110.48972 * 143.46095 * 21 5 4 35 35 H 1.09008 * 110.48319 * 266.10463 * 21 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.2948 2.1617 -1.2124 5 6 3.1745 3.3440 -0.7489 6 1 4.2333 3.1038 -0.8453 7 7 2.8468 4.5639 -1.4910 8 6 3.7466 5.5637 -1.5752 9 8 4.8289 5.4536 -1.0355 10 6 3.4160 6.8005 -2.3343 11 8 2.3329 6.9108 -2.8739 12 7 4.3179 7.7980 -2.4231 13 6 4.0153 8.9293 -3.1170 14 1 3.0526 9.0274 -3.5966 15 6 4.9492 9.9627 -3.2086 16 7 6.1168 9.8439 -2.6263 17 14 4.5342 11.5150 -4.1613 18 1 3.3413 12.1619 -3.5582 19 1 5.6852 12.4516 -4.1071 20 1 4.2460 11.1655 -5.5756 21 6 2.7700 3.4752 0.7378 22 6 2.2716 2.0962 1.1098 23 8 2.1217 1.6943 2.2442 24 1 -0.3633 0.5139 -0.8901 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5140 0.8899 27 1 1.8934 -0.5140 -0.8899 28 1 1.8933 -0.5139 0.8901 29 1 1.3643 2.5304 -1.6438 30 1 2.8332 1.5532 -1.9390 31 1 1.9822 4.6519 -1.9218 32 1 5.1824 7.7101 -1.9921 33 1 6.7656 10.5622 -2.6897 34 1 3.6334 3.7457 1.3456 35 1 1.9751 4.2121 0.8532 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000391737072.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:02:52 Heat of formation + Delta-G solvation = -129.257665 kcal Electronic energy + Delta-G solvation = -20149.158349 eV Core-core repulsion = 16760.164720 eV Total energy + Delta-G solvation = -3388.993629 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.87437 -40.97301 -39.14634 -37.76746 -36.45630 -35.79320 -33.61774 -33.23870 -30.16599 -28.72962 -27.72502 -25.18777 -24.20573 -22.52527 -21.39588 -20.52141 -20.27853 -18.84842 -18.10991 -17.67670 -17.20161 -16.73791 -16.49248 -16.44271 -15.72435 -15.65730 -15.13155 -14.80157 -14.64006 -14.57197 -14.36964 -14.19518 -13.64322 -13.30058 -13.04175 -12.94015 -12.78152 -12.57041 -12.41587 -12.23290 -12.11284 -12.01151 -11.62996 -11.17356 -10.28175 -10.24313 -10.23295 -9.83538 -8.64150 -6.08722 0.60123 1.41079 1.42625 1.50538 1.53946 1.65397 2.00279 2.29964 2.38286 3.13409 3.16999 3.33925 3.45150 3.73418 3.92522 4.05808 4.13600 4.25711 4.47979 4.51145 4.56222 4.72375 4.78446 4.82850 4.96244 5.26333 5.27468 5.29384 5.52031 5.69965 5.96300 6.14718 6.38757 6.82113 7.00695 7.02412 7.30437 7.82087 8.51236 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.048023 B = 0.003429 C = 0.003314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 582.911386 B = 8164.309995 C = 8446.758521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.115 3.885 3 N -0.611 5.611 4 C 0.105 3.895 5 C 0.137 3.863 6 H 0.111 0.889 7 N -0.682 5.682 8 C 0.527 3.473 9 O -0.559 6.559 10 C 0.391 3.609 11 O -0.614 6.614 12 N -0.511 5.511 13 C -0.345 4.345 14 H 0.100 0.900 15 C -0.004 4.004 16 N -0.896 5.896 17 Si 1.008 2.992 18 H -0.265 1.265 19 H -0.269 1.269 20 H -0.263 1.263 21 C -0.169 4.169 22 C 0.520 3.480 23 O -0.575 6.575 24 H 0.067 0.933 25 H 0.086 0.914 26 H 0.034 0.966 27 H 0.114 0.886 28 H 0.070 0.930 29 H 0.100 0.900 30 H 0.121 0.879 31 H 0.421 0.579 32 H 0.401 0.599 33 H 0.288 0.712 34 H 0.099 0.901 35 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.060 -15.935 0.202 17.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.005 4.005 3 N -0.344 5.344 4 C -0.017 4.017 5 C 0.032 3.968 6 H 0.129 0.871 7 N -0.336 5.336 8 C 0.310 3.690 9 O -0.437 6.437 10 C 0.175 3.825 11 O -0.504 6.504 12 N -0.145 5.145 13 C -0.475 4.475 14 H 0.118 0.882 15 C -0.208 4.208 16 N -0.534 5.534 17 Si 0.829 3.171 18 H -0.189 1.189 19 H -0.194 1.194 20 H -0.187 1.187 21 C -0.210 4.210 22 C 0.309 3.691 23 O -0.455 6.455 24 H 0.086 0.914 25 H 0.105 0.895 26 H 0.053 0.947 27 H 0.132 0.868 28 H 0.089 0.911 29 H 0.118 0.882 30 H 0.139 0.861 31 H 0.260 0.740 32 H 0.235 0.765 33 H 0.099 0.901 34 H 0.118 0.882 35 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.912 -16.153 0.828 17.589 hybrid contribution 0.102 0.881 0.002 0.887 sum -6.811 -15.272 0.830 16.742 Atomic orbital electron populations 1.22134 0.95126 1.03391 1.01753 1.21613 0.94902 0.79664 1.04327 1.48444 1.64886 1.14596 1.06499 1.22441 1.00564 0.91543 0.87195 1.21837 1.01636 0.84045 0.89322 0.87103 1.45412 1.19127 1.15210 1.53819 1.20021 0.84149 0.84688 0.80136 1.90712 1.24110 1.81173 1.47689 1.19577 0.86730 0.86439 0.89713 1.90561 1.24303 1.82054 1.53494 1.41656 1.15888 1.14020 1.42932 1.19943 1.03128 0.93786 1.30601 0.88171 1.26506 0.94147 1.02754 0.97441 1.69539 1.06729 1.35862 1.41232 0.84780 0.78339 0.75556 0.78452 1.18936 1.19359 1.18742 1.22832 1.04133 0.95719 0.98349 1.20918 0.76204 0.87662 0.84355 1.90691 1.55854 1.76052 1.22904 0.91391 0.89504 0.94719 0.86829 0.91135 0.88200 0.86058 0.73992 0.76453 0.90148 0.88223 0.87035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.07 10.24 71.98 0.74 -1.33 16 2 C 0.12 1.55 6.65 86.38 0.57 2.12 16 3 N -0.61 -10.86 2.93 -817.84 -2.40 -13.26 16 4 C 0.11 1.45 7.08 86.82 0.61 2.06 16 5 C 0.14 2.95 3.48 46.05 0.16 3.11 16 6 H 0.11 2.55 7.63 -2.39 -0.02 2.53 16 7 N -0.68 -18.76 5.16 -439.45 -2.27 -21.03 16 8 C 0.53 20.49 7.87 87.08 0.69 21.17 16 9 O -0.56 -23.91 16.16 -3.54 -0.06 -23.97 16 10 C 0.39 18.62 7.82 87.08 0.68 19.30 16 11 O -0.61 -31.05 16.03 -3.73 -0.06 -31.11 16 12 N -0.51 -26.76 5.25 -308.87 -1.62 -28.38 16 13 C -0.34 -18.72 9.67 84.35 0.82 -17.91 16 14 H 0.10 5.56 7.15 -2.91 -0.02 5.54 16 15 C 0.00 -0.21 5.51 85.14 0.47 0.26 16 16 N -0.90 -47.10 13.03 21.76 0.28 -46.82 16 17 Si 1.01 39.68 29.56 68.60 2.03 41.71 16 18 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 19 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 20 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 21 C -0.17 -4.07 6.59 30.59 0.20 -3.86 16 22 C 0.52 13.26 8.02 87.90 0.71 13.96 16 23 O -0.58 -19.38 17.60 -3.04 -0.05 -19.44 16 24 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 25 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 26 H 0.03 0.61 8.14 -2.39 -0.02 0.59 16 27 H 0.11 0.80 8.14 -2.39 -0.02 0.79 16 28 H 0.07 1.15 7.93 -2.38 -0.02 1.13 16 29 H 0.10 1.09 7.78 -2.39 -0.02 1.07 16 30 H 0.12 1.05 8.14 -2.38 -0.02 1.03 16 31 H 0.42 10.41 7.85 -92.71 -0.73 9.68 16 32 H 0.40 21.30 7.35 -92.71 -0.68 20.62 16 33 H 0.29 13.96 8.30 -92.71 -0.77 13.19 16 34 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 35 H 0.11 2.67 8.08 -2.38 -0.02 2.65 16 Total: -1.00 -69.91 310.88 1.23 -68.69 By element: Atomic # 1 Polarization: 35.00 SS G_CDS: -0.27 Total: 34.73 kcal Atomic # 6 Polarization: 33.24 SS G_CDS: 5.64 Total: 38.89 kcal Atomic # 7 Polarization: -103.49 SS G_CDS: -6.00 Total: -109.49 kcal Atomic # 8 Polarization: -74.34 SS G_CDS: -0.17 Total: -74.52 kcal Atomic # 14 Polarization: 39.68 SS G_CDS: 2.03 Total: 41.71 kcal Total: -69.91 1.23 -68.69 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000391737072.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.572 kcal (2) G-P(sol) polarization free energy of solvation -69.913 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -129.258 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds