Wall clock time and date at job start Mon Mar 30 2020 05:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.29553 * 2 1 4 4 N 1.45752 * 109.30272 * 240.42161 * 2 1 3 5 5 C 1.33346 * 124.10865 * 220.84061 * 4 2 1 6 6 O 1.21282 * 118.24831 * 182.19748 * 5 4 2 7 7 C 1.50176 * 123.50821 * 2.17325 * 5 4 2 8 8 C 1.53070 * 109.89234 * 342.44384 * 7 5 4 9 9 C 1.52918 * 109.13844 * 119.48485 * 2 1 3 10 10 H 1.09004 * 109.60095 * 290.88538 * 9 2 1 11 11 N 1.46500 * 109.59872 * 51.20155 * 9 2 1 12 12 C 1.34781 * 119.99676 * 204.99793 * 11 9 2 13 13 O 1.21433 * 120.00206 * 0.02562 * 12 11 9 14 14 C 1.48836 * 119.99822 * 180.02562 * 12 11 9 15 15 O 1.21500 * 120.00003 * 0.02562 * 14 12 11 16 16 N 1.34773 * 119.99986 * 180.02562 * 14 12 11 17 17 C 1.36117 * 119.99728 * 179.97438 * 16 14 12 18 18 H 1.08003 * 120.00527 * 0.02562 * 17 16 14 19 19 C 1.39592 * 119.99737 * 180.02562 * 17 16 14 20 20 N 1.31020 * 120.00027 * 0.02562 * 19 17 16 21 21 Si 1.86801 * 119.99973 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47237 * 89.99929 * 21 19 17 23 23 H 1.48497 * 109.46894 * 210.00193 * 21 19 17 24 24 H 1.48502 * 109.47212 * 330.00014 * 21 19 17 25 25 H 1.08997 * 109.46439 * 179.58193 * 1 2 3 26 26 H 1.08995 * 109.47015 * 299.58034 * 1 2 3 27 27 H 1.08999 * 109.46945 * 59.58268 * 1 2 3 28 28 H 0.97007 * 117.94848 * 40.81260 * 4 2 1 29 29 H 1.09003 * 109.40053 * 102.57039 * 7 5 4 30 30 H 1.08999 * 109.40681 * 222.31268 * 7 5 4 31 31 H 1.08993 * 109.67862 * 168.63106 * 8 7 5 32 32 H 1.09000 * 109.66999 * 289.16783 * 8 7 5 33 33 H 0.96999 * 120.00290 * 25.00241 * 11 9 2 34 34 H 0.96999 * 119.99870 * 359.97438 * 16 14 12 35 35 H 0.96999 * 119.99930 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8902 1.0288 0.0000 4 7 2.0119 -0.6790 -1.1963 5 6 3.0473 -1.5190 -1.2136 6 8 3.3831 -1.9945 -2.2776 7 6 3.8204 -1.9074 0.0140 8 6 3.5479 -0.9062 1.1394 9 6 2.0314 -0.7111 1.2576 10 1 1.8054 -0.1050 2.1350 11 7 1.3755 -2.0154 1.3791 12 6 1.2475 -2.5951 2.5891 13 8 1.6753 -2.0361 3.5785 14 6 0.5817 -3.9205 2.7125 15 8 0.1540 -4.4801 1.7224 16 7 0.4532 -4.5000 3.9225 17 6 -0.1562 -5.7119 4.0353 18 1 -0.5364 -6.2094 3.1553 19 6 -0.2898 -6.3119 5.2886 20 7 0.1709 -5.7083 6.3563 21 14 -1.1254 -7.9754 5.4435 22 1 -0.1119 -9.0527 5.3115 23 1 -1.7852 -8.0762 6.7700 24 1 -2.1435 -8.1196 4.3721 25 1 -0.3632 -1.0276 -0.0075 26 1 -0.3633 0.5073 0.8937 27 1 -0.3633 0.5203 -0.8862 28 1 1.5500 -0.5096 -2.0324 29 1 3.5151 -2.9037 0.3340 30 1 4.8859 -1.9128 -0.2156 31 1 3.9422 -1.2937 2.0788 32 1 4.0237 0.0463 0.9063 33 1 1.0335 -2.4618 0.5887 34 1 0.7949 -4.0535 4.7128 35 1 0.0778 -6.1250 7.2273 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000393535416.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:59:37 Heat of formation + Delta-G solvation = -115.197918 kcal Electronic energy + Delta-G solvation = -20972.226894 eV Core-core repulsion = 17583.842941 eV Total energy + Delta-G solvation = -3388.383953 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 269.121 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.89612 -39.31691 -37.64103 -36.72466 -34.47304 -33.82815 -32.47693 -31.45455 -30.61619 -27.25677 -25.84329 -23.69337 -22.99513 -21.86076 -19.70518 -19.16034 -18.38993 -17.26505 -16.96062 -16.28054 -15.81447 -15.54907 -15.10202 -15.00975 -14.50082 -14.26214 -13.96430 -13.70314 -13.46007 -12.95077 -12.86281 -12.66320 -12.59076 -11.88494 -11.79510 -11.43202 -11.25496 -11.20376 -11.19465 -10.59726 -10.48009 -10.40773 -9.82728 -9.76497 -9.29347 -8.90768 -8.34338 -8.27696 -6.72301 -4.04295 2.34596 2.59313 3.05615 3.11978 3.14384 3.18287 3.31175 4.01776 4.17944 4.27981 4.45955 4.53939 4.79637 4.92139 4.97438 5.05683 5.13905 5.22658 5.46108 5.52919 5.68450 5.70219 5.87795 5.91924 5.98614 6.01899 6.62248 6.64516 7.19432 7.26261 7.58223 7.77941 8.12667 8.25031 8.52228 8.90576 9.25857 9.79354 10.42319 Molecular weight = 269.12amu Principal moments of inertia in cm(-1) A = 0.031054 B = 0.004463 C = 0.004357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.433988 B = 6271.831146 C = 6425.071687 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.131 3.869 3 H 0.090 0.910 4 N -0.718 5.718 5 C 0.523 3.477 6 O -0.559 6.559 7 C -0.136 4.136 8 C -0.136 4.136 9 C 0.134 3.866 10 H 0.110 0.890 11 N -0.709 5.709 12 C 0.516 3.484 13 O -0.543 6.543 14 C 0.390 3.610 15 O -0.597 6.597 16 N -0.497 5.497 17 C -0.306 4.306 18 H 0.113 0.887 19 C 0.032 3.968 20 N -0.867 5.867 21 Si 0.939 3.061 22 H -0.273 1.273 23 H -0.280 1.280 24 H -0.265 1.265 25 H 0.071 0.929 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.399 0.601 29 H 0.105 0.895 30 H 0.100 0.900 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.410 0.590 34 H 0.405 0.595 35 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.964 12.056 -7.668 14.592 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.026 3.974 3 H 0.107 0.893 4 N -0.371 5.371 5 C 0.311 3.689 6 O -0.437 6.437 7 C -0.175 4.175 8 C -0.175 4.175 9 C 0.028 3.972 10 H 0.128 0.872 11 N -0.364 5.364 12 C 0.301 3.699 13 O -0.420 6.420 14 C 0.174 3.826 15 O -0.486 6.486 16 N -0.131 5.131 17 C -0.436 4.436 18 H 0.130 0.870 19 C -0.175 4.175 20 N -0.505 5.505 21 Si 0.764 3.236 22 H -0.198 1.198 23 H -0.205 1.205 24 H -0.189 1.189 25 H 0.089 0.911 26 H 0.095 0.905 27 H 0.082 0.918 28 H 0.235 0.765 29 H 0.123 0.877 30 H 0.119 0.881 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.246 0.754 34 H 0.240 0.760 35 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 3.298 11.766 -7.695 14.441 hybrid contribution -0.551 -0.568 0.046 0.792 sum 2.748 11.198 -7.649 13.836 Atomic orbital electron populations 1.22182 0.93416 1.03937 1.03014 1.21297 0.95522 0.96261 0.84327 0.89263 1.45649 1.32873 1.46634 1.11919 1.20256 0.80010 0.77567 0.91108 1.90755 1.67461 1.53666 1.31854 1.21605 1.01293 1.02046 0.92604 1.22104 0.95824 0.99822 0.99759 1.21262 0.92225 0.85820 0.97908 0.87233 1.45722 1.60289 1.20210 1.10213 1.20723 0.79177 0.87217 0.82746 1.90688 1.49191 1.65169 1.36919 1.18932 0.90737 0.87554 0.85337 1.90599 1.55850 1.65676 1.36484 1.41564 1.46280 1.17697 1.07534 1.19893 1.33669 0.94863 0.95198 0.86951 1.25593 0.96882 1.00503 0.94537 1.69481 1.42400 1.39185 0.99463 0.85718 0.79395 0.80380 0.78067 1.19846 1.20485 1.18881 0.91050 0.90506 0.91798 0.76541 0.87686 0.88122 0.89445 0.90262 0.75354 0.76005 0.90857 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.41 9.11 37.16 0.34 -1.07 16 2 C 0.13 1.13 3.37 -68.37 -0.23 0.90 16 3 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 4 N -0.72 -7.27 5.02 -54.85 -0.28 -7.54 16 5 C 0.52 6.92 7.49 -11.87 -0.09 6.83 16 6 O -0.56 -9.61 17.78 5.56 0.10 -9.51 16 7 C -0.14 -1.63 5.60 -28.10 -0.16 -1.78 16 8 C -0.14 -1.45 5.80 -26.51 -0.15 -1.60 16 9 C 0.13 1.52 2.37 -67.79 -0.16 1.35 16 10 H 0.11 1.26 7.57 -51.93 -0.39 0.87 16 11 N -0.71 -10.79 3.28 -54.29 -0.18 -10.97 16 12 C 0.52 10.27 7.84 -11.87 -0.09 10.17 16 13 O -0.54 -11.49 16.13 5.42 0.09 -11.40 16 14 C 0.39 9.42 7.82 -11.87 -0.09 9.33 16 15 O -0.60 -15.61 16.03 5.37 0.09 -15.52 16 16 N -0.50 -12.85 5.25 -11.59 -0.06 -12.91 16 17 C -0.31 -8.24 9.67 -15.15 -0.15 -8.38 16 18 H 0.11 3.11 7.15 -52.48 -0.38 2.74 16 19 C 0.03 0.81 5.51 -17.39 -0.10 0.72 16 20 N -0.87 -22.70 13.03 55.53 0.72 -21.97 16 21 Si 0.94 19.73 29.56 -169.99 -5.02 14.71 16 22 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 23 H -0.28 -5.72 7.11 56.52 0.40 -5.32 16 24 H -0.26 -5.53 7.11 56.52 0.40 -5.13 16 25 H 0.07 0.76 6.93 -51.93 -0.36 0.40 16 26 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.40 3.63 8.67 -40.82 -0.35 3.28 16 29 H 0.10 1.45 7.78 -51.93 -0.40 1.04 16 30 H 0.10 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 32 H 0.08 0.65 8.13 -51.93 -0.42 0.23 16 33 H 0.41 6.42 7.07 -40.82 -0.29 6.13 16 34 H 0.40 10.50 7.35 -40.82 -0.30 10.20 16 35 H 0.28 6.82 8.30 -40.82 -0.34 6.48 16 LS Contribution 301.63 15.07 4.55 4.55 Total: -1.00 -31.80 301.63 -5.02 -36.83 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: -4.14 Total: 17.28 kcal Atomic # 6 Polarization: 17.35 SS G_CDS: -0.88 Total: 16.47 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: 0.21 Total: -53.39 kcal Atomic # 8 Polarization: -36.71 SS G_CDS: 0.27 Total: -36.44 kcal Atomic # 14 Polarization: 19.73 SS G_CDS: -5.02 Total: 14.71 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -31.80 -5.02 -36.83 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000393535416.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.371 kcal (2) G-P(sol) polarization free energy of solvation -31.805 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.176 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds